Lsi03G004680 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytoplasmic membrane protein
Location	chr03 : 5299383 .. 5303781 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGCGAAAGGTTACTGCTCTCTCATGATCGTTTGATCAAATCCAGTTGAAGAGTGATCAACCACAAAGAAAAGAACTGGCGTTTCTTCTTTTTCTGGGTGATTAATAGAGCTTTCCCAGAAATTTCTGTATTCGATTCGTTTTCTTGTTTCGATTGAGGACAAGGATTTCTGTAATTTTCAATTTAGTTGGGGTTGAAGATGGCAACAGTAGGACATACCCGTCCGACCAGTTGGTTTTACCAGAAGATCGTCGATCCTCTCCTCCAAATCCTCCAGAGGTTCTTCCTCTCACTGCGCATTTGAATTTTCAAATATTCTATTTCTATTTGAGCAGTGAAGTTCGTTGGATAGGAATTTGACGGAATCTGTTCTTCATTTGGTACAAATTTTGCATGGGATTTTTAATCTGAGGATCAGATATTGCTTGGCATTTCACAGCTTGTCTTTGATTGGAAGCATATTTTGATTTTATTTCGAGTTTCTGGCCGTCTGGTATGGAATGGAAGGCATATCCCTAAGGAGAACAATTAGAACTGCTGATTTCAGTGATTTCAAGAATTACTCTTTCCCTTCAGATGCAATTTTTATATCATTAAAATTGGTTTGGAAGGATTAAAAGCATGTCTCAAAAGTGATTTTAAGAATTTCAGAATAAATGCCCTTAATGGATTAGTAGTTGTTTCTGCTATTTCTTTCCTCAATGAGGCAAATGGTCCAAAGCTATTCTCTTAATTTTCTGTCGATAGACCTTGAAGAAATTCCTAAAACTTTTATACTCGCCCTTCTTGGTTTTGTTGTTGAAGGGGCGCAGAGCCGAAGCAACTGGCATTCTCTGCAGCTCTAGGCATAACCTTGGGATTGTTTCCTATATGCGGTATGTATATCCTTTACAACAGAGAGACTAATGCACTCTGTTGCATTTACATTTAACTGCATTATGTTTCTTAAGATGTGAAGTTTTTTAATGTGTTCAAGTTTATATTGAGAAAGGGTGGAAGCTTTGCTCTCTTGATTATTTCTATATTGTATTGCCTGTCCATCATGGTTTCTTCGATCTTGGTTTGTTATTTGATTGGTGTTAAAAGCACAGTAGTATTTAAATCCTCATGTAAATACAAACACTTAAGCATACCTCGTCTTAAAACCAGTACAGAACATTTGAGATTGACGAAATGTCAAAAATCAGAAAAGGTGAGTATAATTTAGGTACTAGTGGGCATTGCTATTATTTTTAGATAGAAACCAAAATATAGAATTCAAGGATAGATGGTATCAGGGTTATTGTGGAAGATCCATTCATTCTCTTATTCTTTTTCTTGGTTATTGTTATTTGTCACTTAACTACTTTTTTACGGTAAGGACTTGTTAGAGATATCATGATAATTTTTTTGCTTCAGTTGATGTTGTTAGCTCTAGGTTTATCTATGTTAAAATAATGTGTGAAGTTTGTACCACCATTAATTTGATACTTTATTTTTCATTAACACAGGGGTCACTGTATTCCTATGCGGGTTTGCTATTGCATTTCTTGGGTCTCTTTGTCATGCTCCAACAGTGATGCTTGCTAACTTTATTGCTACTCCCATAGAATTGAGGTACTTGTATGCTCAGTATTTTACATCACAATAAAAACAAACACTGGAGAGTTGGATCTTATCCGCATATTCTGATGTGAAGTGGTAATTCTTTTTCATAGGGAAAAGCACCTCTTATAAATTGAACTTTTTCATGTAATTTATATATGCGTGCATTTCTTGAGTCAGAGGCTTGACGATGTTTCATCCTTATAATTTTTTTTTTTTTTTTTTCTCTGAAGTTTGGTGGTGCCTTTCTTGCGCTTTGGTGAAGCTATTTCCGGGGGAGCTCGTTTCCCATTTACACCTGATGCTTTGAAGAAAGTTTTTACTGGCCAAGCTTCGCATGAAGTACTATTGAGTATTGCTCATGTGGTAAGGTTTCTTCTACATTCTTTTATCAGTGCTGTGCATGCAGGAATTATTATTGGTACATCTGTCTTTGCTCAGGATTAGACTATAAGATTTGATCAGCTATTAGTTGCCGTTCTCAAGATCAAATACTCTTCAATGAGTGAATTGAATTGGTTTGAGAAGCTAGACGATTGTATTATAACAGATCCGTTTTAGAGTGTTGTTATCAGCTGGGTACACAATAAGGAGGTCATCTCAGGTTTTGTTGACACTAAATCTCCAATTTTTCTTGTGAAAACTCATATTTATGTTTAGATCTCTTCAAGGAGAATGTGAGTATAGATTGTGGAATATTTCTCTGAGTTAGAGAAGTTAGACTTCGGCTATGTTGGTGCAAACATATTAACGAAAACTTAGTAGAACAAACAAATGTGTGGCAGATTGAATTGTATAAGAAGAGAGAGATAGAGGGGGCGGGGGCGGGAGCGGGAATGGGAGTGGGAGCGGGGCATATGTGCATATAGAAGGGACAAGGGAGGATCAAGGTTCACATATGGAGGTTTGGGATTGTTTTGACACTAGTATGAAAGCATGTATGGTCTCAACTCGTTAGAAGAGGGTAACAAGTAACACCTCTTACAGTCTTTACTTCCTTGGAATACACACATTAGAGTGAATGGGCAACTTGTGTACCCCTTCACAAAAAAGAAAGACAAACTCTTGTATCGAAATGAATGCTATCATAATAGGAAGACAATAGATTTGTCAAGATGCACCTATTGTATTGCTCATTTCACTCATTGGTATGGCATTCAACAATGGCGAAATGGAAAGATGCATGAACTTAGTTTCTTACCAATTGTCAATTTCTCCTCTCACTTGCCTCAAAACCTCAAACTGCTTGCTGTATTTTTATCATAGTCATTTGCGTTCTGTTTATTTCTTTTCCCCTAACCCAGTAATTTTGTTCTAGGGTTTTAAATGAACATCAATCATCTTTATTTGCTCATTCTTCCATTCATATGATATATCTGGAGAAATAGTTGGAAATAACCCTAAAATGTTTTCCCCATTCACAACTAGCACACGTTTTTGAATTTCGTTGAAATAGTTTTTTTCGGTCCTTCTTGGCCGAGATCGACATCAAGATTTGAATAAAATTTTTATTTTTTTTCATTTTATTTTCAAACCATTGATTCTTTTGGGCTTTCTTGGTGAAGTCTCGCCTGAGATGAACACCGAGATCCACATAATTTTTCCAAATATTATTTAATCTTTCCAAATCTTATTACTAAATCTTACATTTTTCAAATCTATCTTTCGTAGTGTGTTTTTTAAATTTTGGAAAGATCATAAAGATTAAGTAAGATTTGGAGAAATTACATGGATCTTGATCTTCATCCTGGTCGAGACTCCACCAAGAAAGCCCAAAAGAATCGATAATTTGGCTATAAGATGAAAAAGTTGTATTTTTAATTCAAATCTCGTTGTCGATCTCGGCCACGAAGGCCCGAGAAAAACTATTTCAACGAGTTTAAAAAAAGTGTGTTAGTTGTGAAATGGAGAAACATCTAAGGGTTATTTCTGACAATTACCCATCTTTCTGCCATGCCAAGTAATCTAGAGAACCTAACCAACCATCCTTACGATTATGCCATACTGTGTCGTCAAATACAACAATTGTGTGTTATTAGTTATCCCCAACACTAACACCATGTCACCAACCAAGTTTCTATTTCCCTGTGGTTGTGCTGATTCTCTACATTTTTAGTTCTAATATGAGAATGTTAGTACGTATATTGTCATTAATAAACTGGATGAAATATCAATATTGGCAGTTGTTGGGATGGCTTGTTGCTGCACCCTTTATTCTGGGCCTTGGATATTTGTTGTTTTTACCATGTTTCAAGATTTTAGTCCGCAAGTTCAGCGCTGTTGCTTCAAGCCCAAAGAAGTCACCTCGTTCGCACTCAGATATCAGACTGAAGGTGAGAGATGTCTGATTCAAGGATCCCAGAAATGGTGCCGATCGTTCGTAGATCCGACGCTTCAGCGGTTTCTAATCAGGTGCATTTCCTGGAAACTTGGTGACTCACATTAACATGATAACCTTCCTTTGTATGTATCACTAAGGCGTTGCTGCACTACTCGGTCGATGCCCATTATCTGTTTTCAGTTGCTTCGATTTGTAATGGTATGAATACAGTTTTCTGGATGGAAGTCTGATCAAAATATCATAAAAGCTGGGCTGGCTACTATTAGAGAATGAAACTGGATGCAAGGATATTATATTTTATTCATTGCATTATTGTATTGAATGTGTAACCTACCTTCATCAATAAACCTTTGAAAGGCAAGTTCTGAAATTGAAGGGCAAAAATGAAATGATTTTTGTACAAACTTTAAATGGACCACAACGGTAATGATTCCTTTTCAATATCCTAATGGTGTTTGGTGGTTCATTAAAG

mRNA sequence

GGAAGCGAAAGGTTACTGCTCTCTCATGATCGTTTGATCAAATCCAGTTGAAGAGTGATCAACCACAAAGAAAAGAACTGGCGTTTCTTCTTTTTCTGGGTGATTAATAGAGCTTTCCCAGAAATTTCTGTATTCGATTCGTTTTCTTGTTTCGATTGAGGACAAGGATTTCTGTAATTTTCAATTTAGTTGGGGTTGAAGATGGCAACAGTAGGACATACCCGTCCGACCAGTTGGTTTTACCAGAAGATCGTCGATCCTCTCCTCCAAATCCTCCAGAGGGGCGCAGAGCCGAAGCAACTGGCATTCTCTGCAGCTCTAGGCATAACCTTGGGATTGTTTCCTATATGCGGGGTCACTGTATTCCTATGCGGGTTTGCTATTGCATTTCTTGGGTCTCTTTGTCATGCTCCAACAGTGATGCTTGCTAACTTTATTGCTACTCCCATAGAATTGAGTTTGGTGGTGCCTTTCTTGCGCTTTGGTGAAGCTATTTCCGGGGGAGCTCGTTTCCCATTTACACCTGATGCTTTGAAGAAAGTTTTTACTGGCCAAGCTTCGCATGAAGTACTATTGAGTATTGCTCATGTGTTGTTGGGATGGCTTGTTGCTGCACCCTTTATTCTGGGCCTTGGATATTTGTTGTTTTTACCATGTTTCAAGATTTTAGTCCGCAAGTTCAGCGCTGTTGCTTCAAGCCCAAAGAAGTCACCTCGTTCGCACTCAGATATCAGACTGAAGGTGAGAGATGTCTGATTCAAGGATCCCAGAAATGGTGCCGATCGTTCGTAGATCCGACGCTTCAGCGGTTTCTAATCAGGTGCATTTCCTGGAAACTTGGTGACTCACATTAACATGATAACCTTCCTTTGTATGTATCACTAAGGCGTTGCTGCACTACTCGGTCGATGCCCATTATCTGTTTTCAGTTGCTTCGATTTGTAATGGTATGAATACAGTTTTCTGGATGGAAGTCTGATCAAAATATCATAAAAGCTGGGCTGGCTACTATTAGAGAATGAAACTGGATGCAAGGATATTATATTTTATTCATTGCATTATTGTATTGAATGTGTAACCTACCTTCATCAATAAACCTTTGAAAGGCAAGTTCTGAAATTGAAGGGCAAAAATGAAATGATTTTTGTACAAACTTTAAATGGACCACAACGGTAATGATTCCTTTTCAATATCCTAATGGTGTTTGGTGGTTCATTAAAG

Coding sequence (CDS)

ATGGCAACAGTAGGACATACCCGTCCGACCAGTTGGTTTTACCAGAAGATCGTCGATCCTCTCCTCCAAATCCTCCAGAGGGGCGCAGAGCCGAAGCAACTGGCATTCTCTGCAGCTCTAGGCATAACCTTGGGATTGTTTCCTATATGCGGGGTCACTGTATTCCTATGCGGGTTTGCTATTGCATTTCTTGGGTCTCTTTGTCATGCTCCAACAGTGATGCTTGCTAACTTTATTGCTACTCCCATAGAATTGAGTTTGGTGGTGCCTTTCTTGCGCTTTGGTGAAGCTATTTCCGGGGGAGCTCGTTTCCCATTTACACCTGATGCTTTGAAGAAAGTTTTTACTGGCCAAGCTTCGCATGAAGTACTATTGAGTATTGCTCATGTGTTGTTGGGATGGCTTGTTGCTGCACCCTTTATTCTGGGCCTTGGATATTTGTTGTTTTTACCATGTTTCAAGATTTTAGTCCGCAAGTTCAGCGCTGTTGCTTCAAGCCCAAAGAAGTCACCTCGTTCGCACTCAGATATCAGACTGAAGGTGAGAGATGTCTGA

Protein sequence

MATVGHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV

Homology

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BLAST of Lsi03G004680 vs. TrEMBL
Match: A0A0A0LSU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401460 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 7.5e-91
Identity = 172/184 (93.48%), Postives = 177/184 (96.20%), Query Frame = 1


Query: 1   MATVGHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60
           MATVGH R TSWF QKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA
Sbjct: 1   MATVGHARSTSWFNQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60

Query: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQAS 120
           IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGG RFPFTPDALKKVFTG+AS
Sbjct: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGPRFPFTPDALKKVFTGEAS 120

Query: 121 HEVLLSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLK 180
           HEVLLSIAH+LLGWLVAAPFILG+GYLLFLPCFKILVRKFS VASSPKK P SH+DI+LK
Sbjct: 121 HEVLLSIAHLLLGWLVAAPFILGIGYLLFLPCFKILVRKFSTVASSPKKPPHSHTDIKLK 180

Query: 181 VRDV 185
           VRDV
Sbjct: 181 VRDV 184

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BLAST of Lsi03G004680 vs. TrEMBL
Match: V7BRK5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G002300g PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.3e-70
Identity = 134/180 (74.44%), Postives = 153/180 (85.00%), Query Frame = 1


Query: 5   GHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFL 64
           G    T+WF +K+ DPLL I++RGAEP QLAFSAALG+TLG+FPICGVTVFLCG AIA L
Sbjct: 4   GKVGTTNWFQKKVTDPLLSIIRRGAEPNQLAFSAALGLTLGVFPICGVTVFLCGVAIALL 63

Query: 65  GSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVL 124
           G LCHAPTVMLANFIATPIELSLVVPFLRFGEAI+GG+ FP T DALKKVFTGQASHEV+
Sbjct: 64  GPLCHAPTVMLANFIATPIELSLVVPFLRFGEAITGGSHFPLTSDALKKVFTGQASHEVI 123

Query: 125 LSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 184
           LSIAH LLGWL A+P ILG+ +++ LPCFKILV KFS+V SSPKK    HS+ +LKVR +
Sbjct: 124 LSIAHALLGWLAASPIILGILFIVLLPCFKILVHKFSSVPSSPKKPLHPHSETKLKVRAI 183

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BLAST of Lsi03G004680 vs. TrEMBL
Match: A0A0B2QYE1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_037140 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.3e-70
Identity = 137/180 (76.11%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 5   GHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFL 64
           G+ R TSW  +KI DPLL I++RG EP QLAFSAALGITLGLFPICGVTVFLCG AIA L
Sbjct: 4   GNVRITSWVQKKITDPLLSIIRRGTEPNQLAFSAALGITLGLFPICGVTVFLCGMAIALL 63

Query: 65  GSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVL 124
           GS CHAPTVMLANFIATPIELSLVVPFLR GE ISGG+ FP T DALKKV TGQAS EVL
Sbjct: 64  GSFCHAPTVMLANFIATPIELSLVVPFLRLGEVISGGSHFPLTSDALKKVLTGQASREVL 123

Query: 125 LSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 184
           LS+AH LLGWLVA+PFILG  Y++ LPCFKILV  FS+V  SPKK    HS+++LKVRDV
Sbjct: 124 LSVAHALLGWLVASPFILGTLYIVLLPCFKILVHNFSSVPLSPKKPLNPHSEVKLKVRDV 183

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BLAST of Lsi03G004680 vs. TrEMBL
Match: B9S6X9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329390 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-69
Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = 1


Query: 11  SWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSLCHA 70
           +WF +KIVDPL QIL RG EPKQLAFSAALGITLG+FPICGVTV LCG AIA LGSLCHA
Sbjct: 10  AWFSKKIVDPLYQILSRGTEPKQLAFSAALGITLGVFPICGVTVLLCGMAIAMLGSLCHA 69

Query: 71  PTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSIAHV 130
           P+VMLANF+ATPIELSLVVPFLRFGE ISGG  FP T DA KKV TGQASHEVLLSI H 
Sbjct: 70  PSVMLANFVATPIELSLVVPFLRFGELISGGPHFPLTSDAFKKVLTGQASHEVLLSILHA 129

Query: 131 LLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 185
           L+GWLVAAPFIL   Y++FLPCFK+LVRKFS+   SP KSP S +++RLKVRDV
Sbjct: 130 LMGWLVAAPFILAALYIIFLPCFKVLVRKFSSGPGSPIKSPTSFTEVRLKVRDV 183

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BLAST of Lsi03G004680 vs. TrEMBL
Match: D7SMX6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00610 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-69
Identity = 137/173 (79.19%), Postives = 150/173 (86.71%), Query Frame = 1


Query: 12  WFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSLCHAP 71
           WF +KIVDPLLQIL+RGAEPKQLAFSAALGITLG+FPICGVTVFLCG AIA LGSLCH+P
Sbjct: 13  WFNKKIVDPLLQILRRGAEPKQLAFSAALGITLGVFPICGVTVFLCGMAIALLGSLCHSP 72

Query: 72  TVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSIAHVL 131
           +VMLANFIATPIELSLVVPFLRFGE ISGG  FP T DA+KKV TG AS EVLLSI H L
Sbjct: 73  SVMLANFIATPIELSLVVPFLRFGEVISGGPHFPLTSDAMKKVLTGHASREVLLSIVHAL 132

Query: 132 LGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 185
           LGWLVAAPFIL + Y++FLPC K+LVRKFS V SSPKK    H +++LKVRDV
Sbjct: 133 LGWLVAAPFILVILYIIFLPCCKLLVRKFSPVPSSPKKPVHPHMEVKLKVRDV 185

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BLAST of Lsi03G004680 vs. TAIR10
Match: AT1G33490.1 (AT1G33490.1 unknown protein)

HSP 1 Score: 240.7 bits (613), Expect = 6.9e-64
Identity = 121/157 (77.07%), Postives = 137/157 (87.26%), Query Frame = 1


Query: 12  WFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSLCHAP 71
           WF +KI +PL+QIL+RGAEPKQLAFSAALGIT+G+FPICGVTV LCG AIA LGSLCHAP
Sbjct: 11  WFDKKISEPLIQILRRGAEPKQLAFSAALGITMGVFPICGVTVLLCGVAIASLGSLCHAP 70

Query: 72  TVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSIAHVL 131
           TVMLANFIATPIELSLVVPFLR GE I+GG  FP T DALKKVFTGQAS +V LSI + L
Sbjct: 71  TVMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNAL 130

Query: 132 LGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPK 169
           LGWL+AAPF++   Y++FLPCFKILVRKFS+V S+ K
Sbjct: 131 LGWLIAAPFVIVALYIMFLPCFKILVRKFSSVDSTAK 167

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BLAST of Lsi03G004680 vs. TAIR10
Match: AT4G10140.1 (AT4G10140.1 unknown protein)

HSP 1 Score: 231.5 bits (589), Expect = 4.2e-61
Identity = 119/176 (67.61%), Postives = 134/176 (76.14%), Query Frame = 1


Query: 8   RPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSL 67
           R  +WF +KI DPLLQIL+RG EPKQLAFSAALGITLG+FPICGV V LCG A A LGS 
Sbjct: 7   RLKAWFNKKITDPLLQILRRGTEPKQLAFSAALGITLGIFPICGVPVLLCGVAFALLGSS 66

Query: 68  CHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSI 127
           CHAPTVMLAN IATP+EL+LVVPFLR GE ++GG  FP T DALKKVFTGQAS EV LSI
Sbjct: 67  CHAPTVMLANIIATPVELALVVPFLRLGEKVTGGPHFPLTSDALKKVFTGQASQEVFLSI 126

Query: 128 AHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRD 184
            + LLGWLVA PF     Y++ LPCF ILVRKF  VAS+ K      +++  K RD
Sbjct: 127 GNALLGWLVATPFFFITLYVVLLPCFTILVRKFGGVASTQKLPTSMETELNPKPRD 182

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BLAST of Lsi03G004680 vs. NCBI nr
Match: gi|659081186|ref|XP_008441199.1| (PREDICTED: uncharacterized protein LOC103485404 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 175/184 (95.11%), Postives = 179/184 (97.28%), Query Frame = 1


Query: 1   MATVGHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60
           MATVGH RPTSWF QKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA
Sbjct: 1   MATVGHARPTSWFSQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60

Query: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQAS 120
           IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGG RFPFTPDALKKVFTG+AS
Sbjct: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGPRFPFTPDALKKVFTGEAS 120

Query: 121 HEVLLSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLK 180
           HEVLLSIAH+LLGWLVAAPFILG+GYLLFLPCFKILVRKFS VASSPKKSP SH+DIRLK
Sbjct: 121 HEVLLSIAHLLLGWLVAAPFILGIGYLLFLPCFKILVRKFSTVASSPKKSPHSHTDIRLK 180

Query: 181 VRDV 185
           VRDV
Sbjct: 181 VRDV 184

[Close]

BLAST of Lsi03G004680 vs. NCBI nr
Match: gi|449441776|ref|XP_004138658.1| (PREDICTED: uncharacterized protein LOC101220662 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.1e-90
Identity = 172/184 (93.48%), Postives = 177/184 (96.20%), Query Frame = 1


Query: 1   MATVGHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60
           MATVGH R TSWF QKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA
Sbjct: 1   MATVGHARSTSWFNQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFA 60

Query: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQAS 120
           IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGG RFPFTPDALKKVFTG+AS
Sbjct: 61  IAFLGSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGPRFPFTPDALKKVFTGEAS 120

Query: 121 HEVLLSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLK 180
           HEVLLSIAH+LLGWLVAAPFILG+GYLLFLPCFKILVRKFS VASSPKK P SH+DI+LK
Sbjct: 121 HEVLLSIAHLLLGWLVAAPFILGIGYLLFLPCFKILVRKFSTVASSPKKPPHSHTDIKLK 180

Query: 181 VRDV 185
           VRDV
Sbjct: 181 VRDV 184

[Close]

BLAST of Lsi03G004680 vs. NCBI nr
Match: gi|593696296|ref|XP_007148630.1| (hypothetical protein PHAVU_005G002300g [Phaseolus vulgaris])

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-69
Identity = 134/180 (74.44%), Postives = 153/180 (85.00%), Query Frame = 1


Query: 5   GHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFL 64
           G    T+WF +K+ DPLL I++RGAEP QLAFSAALG+TLG+FPICGVTVFLCG AIA L
Sbjct: 4   GKVGTTNWFQKKVTDPLLSIIRRGAEPNQLAFSAALGLTLGVFPICGVTVFLCGVAIALL 63

Query: 65  GSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVL 124
           G LCHAPTVMLANFIATPIELSLVVPFLRFGEAI+GG+ FP T DALKKVFTGQASHEV+
Sbjct: 64  GPLCHAPTVMLANFIATPIELSLVVPFLRFGEAITGGSHFPLTSDALKKVFTGQASHEVI 123

Query: 125 LSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 184
           LSIAH LLGWL A+P ILG+ +++ LPCFKILV KFS+V SSPKK    HS+ +LKVR +
Sbjct: 124 LSIAHALLGWLAASPIILGILFIVLLPCFKILVHKFSSVPSSPKKPLHPHSETKLKVRAI 183

[Close]

BLAST of Lsi03G004680 vs. NCBI nr
Match: gi|734385961|gb|KHN24798.1| (hypothetical protein glysoja_037140 [Glycine soja])

HSP 1 Score: 271.6 bits (693), Expect = 1.0e-69
Identity = 137/180 (76.11%), Postives = 150/180 (83.33%), Query Frame = 1


Query: 5   GHTRPTSWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFL 64
           G+ R TSW  +KI DPLL I++RG EP QLAFSAALGITLGLFPICGVTVFLCG AIA L
Sbjct: 4   GNVRITSWVQKKITDPLLSIIRRGTEPNQLAFSAALGITLGLFPICGVTVFLCGMAIALL 63

Query: 65  GSLCHAPTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVL 124
           GS CHAPTVMLANFIATPIELSLVVPFLR GE ISGG+ FP T DALKKV TGQAS EVL
Sbjct: 64  GSFCHAPTVMLANFIATPIELSLVVPFLRLGEVISGGSHFPLTSDALKKVLTGQASREVL 123

Query: 125 LSIAHVLLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 184
           LS+AH LLGWLVA+PFILG  Y++ LPCFKILV  FS+V  SPKK    HS+++LKVRDV
Sbjct: 124 LSVAHALLGWLVASPFILGTLYIVLLPCFKILVHNFSSVPLSPKKPLNPHSEVKLKVRDV 183

[Close]

BLAST of Lsi03G004680 vs. NCBI nr
Match: gi|223538961|gb|EEF40558.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 270.8 bits (691), Expect = 1.8e-69
Identity = 136/174 (78.16%), Postives = 149/174 (85.63%), Query Frame = 1


Query: 11  SWFYQKIVDPLLQILQRGAEPKQLAFSAALGITLGLFPICGVTVFLCGFAIAFLGSLCHA 70
           +WF +KIVDPL QIL RG EPKQLAFSAALGITLG+FPICGVTV LCG AIA LGSLCHA
Sbjct: 10  AWFSKKIVDPLYQILSRGTEPKQLAFSAALGITLGVFPICGVTVLLCGMAIAMLGSLCHA 69

Query: 71  PTVMLANFIATPIELSLVVPFLRFGEAISGGARFPFTPDALKKVFTGQASHEVLLSIAHV 130
           P+VMLANF+ATPIELSLVVPFLRFGE ISGG  FP T DA KKV TGQASHEVLLSI H 
Sbjct: 70  PSVMLANFVATPIELSLVVPFLRFGELISGGPHFPLTSDAFKKVLTGQASHEVLLSILHA 129

Query: 131 LLGWLVAAPFILGLGYLLFLPCFKILVRKFSAVASSPKKSPRSHSDIRLKVRDV 185
           L+GWLVAAPFIL   Y++FLPCFK+LVRKFS+   SP KSP S +++RLKVRDV
Sbjct: 130 LMGWLVAAPFILAALYIIFLPCFKVLVRKFSSGPGSPIKSPTSFTEVRLKVRDV 183

The following BLAST results are available for this feature:

BLAST of Lsi03G004680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSU8_CUCSA	7.5e-91	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G401460 PE=4 SV=1	[more]
V7BRK5_PHAVU	7.3e-70	74.44	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G002300g PE=4 SV=1	[more]
A0A0B2QYE1_GLYSO	7.3e-70	76.11	Uncharacterized protein OS=Glycine soja GN=glysoja_037140 PE=4 SV=1	[more]
B9S6X9_RICCO	1.2e-69	78.16	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329390 PE=4 SV=1	[more]
D7SMX6_VITVI	1.2e-69	79.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0089g00610 PE=4 SV=...	[more]

BLAST of Lsi03G004680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33490.1	6.9e-64	77.07	unknown protein	[more]
AT4G10140.1	4.2e-61	67.61	unknown protein	[more]

BLAST of Lsi03G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081186\|ref\|XP_008441199.1\|	1.5e-92	95.11	PREDICTED: uncharacterized protein LOC103485404 [Cucumis melo]	[more]
gi\|449441776\|ref\|XP_004138658.1\|	1.1e-90	93.48	PREDICTED: uncharacterized protein LOC101220662 [Cucumis sativus]	[more]
gi\|593696296\|ref\|XP_007148630.1\|	1.0e-69	74.44	hypothetical protein PHAVU_005G002300g [Phaseolus vulgaris]	[more]
gi\|734385961\|gb\|KHN24798.1\|	1.0e-69	76.11	hypothetical protein glysoja_037140 [Glycine soja]	[more]
gi\|223538961\|gb\|EEF40558.1\|	1.8e-69	78.16	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018639	DUF2062

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004680.1	Lsi03G004680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018639	Domain of unknown function DUF2062	PFAM	PF09835	DUF2062	coord: 21..159 score: 2.1
None	No IPR available	PANTHER	PTHR35102	FAMILY NOT NAMED	coord: 2..184 score: 2.3
None	No IPR available	PANTHER	PTHR35102:SF1	SUBFAMILY NOT NAMED	coord: 2..184 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004680	Csa2G401460	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004680	CSPI02G24810	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004680	Cucsa.088470	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004680	CmaCh15G000250	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004680	CmaCh04G030170	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004680	CmoCh15G000250	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004680	CmoCh04G031380	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004680	Cla011921	Watermelon (97103) v1	lsiwmB275
Lsi03G004680	MELO3C008103	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004680	ClCG11G008280	Watermelon (Charleston Gray)	lsiwcgB227
Lsi03G004680	MELO3C008103.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004680	Cla97C11G215290	Watermelon (97103) v2	lsiwmbB224
Lsi03G004680	Bhi04G002067	Wax gourd	lsiwgoB322
Lsi03G004680	Cp4.1LG01g26240	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004680	CsGy2G024540	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004680	Carg06089	Silver-seed gourd	carlsiB017
Lsi03G004680	Carg22870	Silver-seed gourd	carlsiB986
Lsi03G004680	CsaV3_2G033320	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004680	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004680	Cucurbita pepo (Zucchini)	cpelsiB171