Lsi03G004640 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G004640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 5246096 .. 5246590 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCAAGAAAACTTCAGCTTCCAACCCATCAATGGCGGCTCCACCCCCATTACTGAATCACCTCCTCTCTTTAGCCTGGCACCAAAATCAATTGACCACCATGAGAAAGAAGACCATGGCTATGGAAATGTCGATTGTTGTTTGGAAAAAAGAAGAAATGGAGCTCATAGAAAGAGCAATTCTTGCTCCGGGGATAGCAGAAGGACTAATGAGATAGCAATTGATAGCGATGGTGATGAAGATGAGAGGATGGATATGCTGTGGGAAGATTTCAATGAAGAATTGCTGCTGAAAAATTTGAGTTCCAGATTTGGGTCTGATAGGTTGCCGGAACTTGAAGACTTAGAGTCGGAGGAAGCAACGGAAGACGGTGGCAGCGGGGCATTGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTCCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACTTGGTGA

mRNA sequence

ATGGAACCTCAAGAAAACTTCAGCTTCCAACCCATCAATGGCGGCTCCACCCCCATTACTGAATCACCTCCTCTCTTTAGCCTGGCACCAAAATCAATTGACCACCATGAGAAAGAAGACCATGGCTATGGAAATGTCGATTGTTGTTTGGAAAAAAGAAGAAATGGAGCTCATAGAAAGAGCAATTCTTGCTCCGGGGATAGCAGAAGGACTAATGAGATAGCAATTGATAGCGATGGTGATGAAGATGAGAGGATGGATATGCTGTGGGAAGATTTCAATGAAGAATTGCTGCTGAAAAATTTGAGTTCCAGATTTGGGTCTGATAGGTTGCCGGAACTTGAAGACTTAGAGTCGGAGGAAGCAACGGAAGACGGTGGCAGCGGGGCATTGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTCCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACTTGGTGA

Coding sequence (CDS)

ATGGAACCTCAAGAAAACTTCAGCTTCCAACCCATCAATGGCGGCTCCACCCCCATTACTGAATCACCTCCTCTCTTTAGCCTGGCACCAAAATCAATTGACCACCATGAGAAAGAAGACCATGGCTATGGAAATGTCGATTGTTGTTTGGAAAAAAGAAGAAATGGAGCTCATAGAAAGAGCAATTCTTGCTCCGGGGATAGCAGAAGGACTAATGAGATAGCAATTGATAGCGATGGTGATGAAGATGAGAGGATGGATATGCTGTGGGAAGATTTCAATGAAGAATTGCTGCTGAAAAATTTGAGTTCCAGATTTGGGTCTGATAGGTTGCCGGAACTTGAAGACTTAGAGTCGGAGGAAGCAACGGAAGACGGTGGCAGCGGGGCATTGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTCCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACTTGGTGA

Protein sequence

MEPQENFSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRKSNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELEDLESEEATEDGGSGALLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW
BLAST of Lsi03G004640 vs. TrEMBL
Match: A0A0A0LQ09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.3e-65
Identity = 139/165 (84.24%), Postives = 146/165 (88.48%), Query Frame = 1

Query: 1   MEPQENFSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRK 60
           ME QENFSFQPINGGSTPITESPPL   A +SIDHHEKED   GNVDC  E R NG HRK
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPL---ASESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  SNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELEDLESE 120
           SNSCSGDSRRTNEIAI+SD +EDE+MDMLWEDFNEE LLKNLSSRFGS RLPEL+DLESE
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEE-LLKNLSSRFGSRRLPELDDLESE 120

Query: 121 EATEDG-GSGALLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW 165
           EA EDG  SGA+LSARMASVVVIMKVLKKLLFLH+FRRKLKARTW
Sbjct: 121 EAMEDGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

BLAST of Lsi03G004640 vs. TrEMBL
Match: M5VI77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 54/157 (34.39%), Postives = 79/157 (50.32%), Query Frame = 1

Query: 21  ESPPLFSLAPKSID-----HHEKEDHGYGNVDCCLEKRRNGAHRKSNSCSGDSRRTNEIA 80
           +SPPL+ L+P +       +H +E+    + +  +        ++  S S   R T  + 
Sbjct: 18  DSPPLWRLSPAASSKVDDQNHSEEEEEEDDEEEIVNINVKYCDQRRKSFSYIERGTKMVE 77

Query: 81  IDSDGDE----DERMDMLWEDFNEELLLK-NLSSRFGSDRLPELEDLESEEA---TEDGG 140
            D +  +    +E+MDMLWEDFNEEL  + N +S +      E+  L   +A   TE  G
Sbjct: 78  KDQESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSREMLHLGCVKAFKLTETNG 137

Query: 141 SGALLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW 165
             AL S R  SVV +MKVLK+L FLH+   KLK   W
Sbjct: 138 DHAL-STRKPSVVAVMKVLKRLFFLHNSHHKLKKPAW 173

BLAST of Lsi03G004640 vs. TrEMBL
Match: A5AEK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026104 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 1

Query: 5   ENFSFQPINGGSTPITESPPLFSLAPKSIDHH---------EKEDHGYGNVDCCLEKRRN 64
           E+FSF  ++       +SPPL+  +  ++ H          ++ED   G       K  +
Sbjct: 4   EDFSFPIVSDAFPRFIDSPPLWHASSATLCHEGPTTSNTSGQQEDDEEGGCFASTSKPVD 63

Query: 65  GAHRKSNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELE 124
              RKS SC     R      + + DE++RMDMLWEDFNEE L      R GS+ + ++ 
Sbjct: 64  HPRRKSFSCVERGGRMAGGGDEIEDDEEDRMDMLWEDFNEE-LHNRCGPRSGSEEMVKVG 123

Query: 125 DLESEEATEDGGSGALLSARMASVVVIMKVLKKLLFL---HSFRR 158
            ++   A   GG+  + + R AS++V++K+L+KL  L   HS R+
Sbjct: 124 CVQGVAAXRTGGA-VVAARRAASLLVLVKMLRKLFQLXNSHSTRK 166

BLAST of Lsi03G004640 vs. TrEMBL
Match: A0A067H876_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048330mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 46/150 (30.67%), Postives = 75/150 (50.00%), Query Frame = 1

Query: 7   FSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRKSNSCSG 66
           FSF  I        +SPPL+ L+P +  +H    +   N + C +++         SCS 
Sbjct: 10  FSFPIITETHPSSIDSPPLWHLSPAASPNHHSSYNKLSNEEYCKQRK---------SCSN 69

Query: 67  DSRRTNEIAIDSDGDEDE-RMDMLWED-FNEELLLKNLSSRFGSDRLPELEDLESEEATE 126
                +     ++GD++E +MD+LWED FNEE+         G D   EL  + + + ++
Sbjct: 70  ----IDTYHYKTEGDQEENKMDILWEDYFNEEVSTMEAIKSSGGDHSVELGRVRALKLSK 129

Query: 127 DGGSGALLSARMASVVVIMKVLKKLLFLHS 155
           +G      +A+  S+VV MKVLKKL  L++
Sbjct: 130 NGNGAIFSAAKKPSIVVFMKVLKKLFLLNN 146

BLAST of Lsi03G004640 vs. TrEMBL
Match: V4TDW4_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003091mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1

Query: 7   FSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRKSNSCSG 66
           FSF  I        +SPPL+ L+P +  +H    +   N + C +++         SCS 
Sbjct: 80  FSFPIITETHPSSIDSPPLWHLSPAASPNHHSSCNKLSNEEYCKQRK---------SCSN 139

Query: 67  DSRRTNEIAIDSDGDEDERMDMLWED-FNEELLLKNLSSRFGSDRLPELEDLESEEATED 126
                 +     D  E+ +MD+LWED FNEE+         G D   EL  + + + +++
Sbjct: 140 IDTYHYKT---EDDQEENKMDILWEDYFNEEVSTMEAIKSSGGDHSVELGRVRALKLSKN 199

Query: 127 GGSGALLSARMASVVVIMKVLKKLLFLHS 155
           G      +A+  S+VV MKVLKKL  L++
Sbjct: 200 GNGAIFSAAKKPSIVVFMKVLKKLFLLNN 216

BLAST of Lsi03G004640 vs. TAIR10
Match: AT1G71910.1 (AT1G71910.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-06
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 1

Query: 21  ESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRKSNSCSGDSRRTNEIAIDSDG 80
           +SPPL+  +P  +    ++D+ +G     + K  +G H +  S S    R+  I    D 
Sbjct: 28  DSPPLWKHSP--VTSFRRKDYDFGLARLVIGK--DGDHDQRKSFSYVEMRSRWI----DD 87

Query: 81  DEDERMDMLWEDFNEELLLKNLSSRF--GSDRLPELEDLESEEATEDG-GSGALLSARM- 140
            E+E+MDMLWED NEEL  ++ S R   G D   +   L  +E++    G G  LS +  
Sbjct: 88  KEEEKMDMLWEDLNEELPPRSQSLRIVHGGDGGEKKTALFPDESSAVAVGCGMKLSKKTK 147

Query: 141 ----ASVVVIMKVLKKLLFLHSFRRKLKART 164
                +V+V+M+VLKKL+ L S  ++   +T
Sbjct: 148 KKTNLNVLVLMRVLKKLIVLRSSSQRSPVKT 170

BLAST of Lsi03G004640 vs. NCBI nr
Match: gi|778674413|ref|XP_011650206.1| (PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 9.0e-65
Identity = 139/165 (84.24%), Postives = 146/165 (88.48%), Query Frame = 1

Query: 1   MEPQENFSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRK 60
           ME QENFSFQPINGGSTPITESPPL   A +SIDHHEKED   GNVDC  E R NG HRK
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPL---ASESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  SNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELEDLESE 120
           SNSCSGDSRRTNEIAI+SD +EDE+MDMLWEDFNEE LLKNLSSRFGS RLPEL+DLESE
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEE-LLKNLSSRFGSRRLPELDDLESE 120

Query: 121 EATEDG-GSGALLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW 165
           EA EDG  SGA+LSARMASVVVIMKVLKKLLFLH+FRRKLKARTW
Sbjct: 121 EAMEDGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

BLAST of Lsi03G004640 vs. NCBI nr
Match: gi|659082020|ref|XP_008441623.1| (PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 136/165 (82.42%), Postives = 143/165 (86.67%), Query Frame = 1

Query: 1   MEPQENFSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRK 60
           ME QENF FQPING STPITESPPL   A KSIDHHEKED   GN+DC  E R NG HRK
Sbjct: 1   MEAQENFGFQPINGSSTPITESPPL---ASKSIDHHEKEDQSDGNIDCSSEIRSNGGHRK 60

Query: 61  SNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELEDLESE 120
            NSCSGDSRRTNEIAIDSD +EDE+MDMLWEDFNEE L+KNLSSRFGS RLPEL+DLESE
Sbjct: 61  INSCSGDSRRTNEIAIDSDDEEDEKMDMLWEDFNEE-LMKNLSSRFGSRRLPELDDLESE 120

Query: 121 EATEDG-GSGALLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW 165
           EA EDG  SGA+LSARMASVVVIMKVLKKLLFLH+FRRKLKARTW
Sbjct: 121 EAMEDGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

BLAST of Lsi03G004640 vs. NCBI nr
Match: gi|1012179553|ref|XP_015967802.1| (PREDICTED: uncharacterized protein LOC107491478 [Arachis duranensis])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 52/168 (30.95%), Postives = 91/168 (54.17%), Query Frame = 1

Query: 5   ENFSFQPINGGSTPITESPPLFSLAPKSIDHHEKEDHGYGNVDCCLEKRRNGAHRKSNSC 64
           + FSF  I+       +SPPL++L+P +  +  + + G  + D    K  +   RKS S 
Sbjct: 4   DEFSFPRISDTHAHAIDSPPLWNLSPAASPNPYQRNKGEEDCDFFGAKLISQVQRKSFS- 63

Query: 65  SGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELEDL------E 124
           S ++R      +D D +E+E+MD+LWEDFNEEL+  + +    +    E+++        
Sbjct: 64  SVETRIQQRTLLDDD-EEEEKMDLLWEDFNEELMCSSTTGSSATSSSREVDEFRCATPAS 123

Query: 125 SEEATEDGGSGALLSA----RMASVVVIMKVLKKLLFLHSFRRKLKAR 163
           S  A  +  +GAL+ A       S+VVI+KVLKKL  +++++++ + R
Sbjct: 124 SRFANNNNNNGALVPATKNINRPSMVVIVKVLKKLFSVNNYQKQPRRR 169

BLAST of Lsi03G004640 vs. NCBI nr
Match: gi|731430627|ref|XP_010665112.1| (PREDICTED: uncharacterized protein LOC104882672 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 1

Query: 5   ENFSFQPINGGSTPITESPPLFSLAPKSIDHH---------EKEDHGYGNVDCCLEKRRN 64
           E+FSF  ++       +SPPL+  +  ++ H          ++ED   G       K  +
Sbjct: 4   EDFSFPIVSDAFPRFIDSPPLWHASSATLCHEGPTTSNTSGQQEDDEEGGCFASTSKPVD 63

Query: 65  GAHRKSNSCSGDSRRTNEIAIDSDGDEDERMDMLWEDFNEELLLKNLSSRFGSDRLPELE 124
              RKS SC     R      + + DE++RMDMLWEDFNEE L      R GS+ + ++ 
Sbjct: 64  HPRRKSFSCVERGGRMAGGGDEIEDDEEDRMDMLWEDFNEE-LHNRCGPRSGSEEMVKVG 123

Query: 125 DLESEEATEDGGSGALLSARMASVVVIMKVLKKLLFLHSFRRKLKA 162
            ++   A   GG+  + + R AS++V++K+L+KL  LH+     KA
Sbjct: 124 CVQGVAAPRTGGA-VVAARRAASLLVLVKMLRKLFQLHNSHSTRKA 167

BLAST of Lsi03G004640 vs. NCBI nr
Match: gi|645263609|ref|XP_008237314.1| (PREDICTED: uncharacterized protein LOC103336056 [Prunus mume])

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-07
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 1

Query: 21  ESPPLFSLAPKS---IDH--HEKEDHGYGNVDCCLEKRRNGAHRKSNSCSGDSRRTNEIA 80
           +SPPL+ L+P +   +D+  H +E+    + +  +        ++  S S   R T  + 
Sbjct: 18  DSPPLWRLSPAASSKVDYQNHSEEEEEEDDEEEIVNINVKYCDQRRKSFSYIERGTKMVE 77

Query: 81  IDSDGDE----DERMDMLWEDFNEELLLK-NLSSRFGSDRLPELEDLESEEATEDGGSGA 140
            D +  +    +E+MDMLWEDFNEEL  + N +S +      E+  L   +A +   + A
Sbjct: 78  KDPESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSREMLHLGCVKAFKLTKTNA 137

Query: 141 --LLSARMASVVVIMKVLKKLLFLHSFRRKLKARTW 165
             +LS R  SVV +MKVLK+L FLH+  RKLK  TW
Sbjct: 138 DHVLSTRKPSVVPVMKVLKRLFFLHNSHRKLKKPTW 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQ09_CUCSA6.3e-6584.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1[more]
M5VI77_PRUPE7.8e-0734.39Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1[more]
A5AEK3_VITVI1.0e-0631.52Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026104 PE=4 SV=1[more]
A0A067H876_CITSI1.3e-0630.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048330mg PE=4 SV=1[more]
V4TDW4_9ROSI6.6e-0630.20Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003091mg PE=... [more]
Match NameE-valueIdentityDescription
AT1G71910.15.9e-0632.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778674413|ref|XP_011650206.1|9.0e-6584.24PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus][more]
gi|659082020|ref|XP_008441623.1|1.3e-6382.42PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo][more]
gi|1012179553|ref|XP_015967802.1|1.3e-0730.95PREDICTED: uncharacterized protein LOC107491478 [Arachis duranensis][more]
gi|731430627|ref|XP_010665112.1|1.7e-0731.33PREDICTED: uncharacterized protein LOC104882672 [Vitis vinifera][more]
gi|645263609|ref|XP_008237314.1|8.6e-0734.62PREDICTED: uncharacterized protein LOC103336056 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004640.1Lsi03G004640.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34666FAMILY NOT NAMEDcoord: 1..163
score: 8.3
NoneNo IPR availablePANTHERPTHR34666:SF1SUBFAMILY NOT NAMEDcoord: 1..163
score: 8.3