CSPI02G24930 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G24930
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 21345453 .. 21346437 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATGGCCACCTGCCCTTCAATGCCTTTTCTTAAATTGGAGGAATGACAATTGACAAACAAGTTTGCTTCATATGGATGTAATTACTTCCATTTGTGATGTTAACTTATCAAACTCAAAATCATTTTTTTAGTTGTAGTGATATCCTTTTCCCAATCTCCTTTGTCAACTCTATGATTCATTGTCTCTTCTGTTTTATAAACAATCTCAAACCCCAACTTAATCAAATCCTTTTCAACCATTTTCCCATCTCTTCTTTCCCCCAGATTCTCAATTTGCTGATCAAATCAACCTCTAAAATCTAAATCCACACCCATGGAAGCTCAAGAAAACTTTAGCTTCCAACCCATTAATGGCGGCTCCACCCCCATCACTGAATCACCTCCTCTTGCATCAGAATCAATTGACCACCATGAGAAAGAAGATCAAAGCGATGGAAATGTTGATTGTTCTTCGGAAATAAGAAGTAATGGATGTCATAGAAAGAGCAATTCTTGCTCAGGCGATAGCAGAAGGACTAATGAGATAGCAATTAACAGCGATGACGAAGAAGATGAGAAGATGGATATGTTGTGGGAAGATTTCAATGAAGAATTGCTGAAGAATTTGAGTTCCAGATTTGGGTCTCGTCGGTTGCCAGAACTTGATGACTTGGAATCAGAGGAAGCAATGGAAGATGGCAGCAGCAGCGGGGCGATGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTTCTGTTTTTACATAATTTTCGCAGGAAGCTCAAAGCTCGGACATGGTGATTGGGAATTAAGGATTCAAGAAGTTTGGTCTTTGCTGTGTGTTTTAAAATTTTGGGATGAAATAAAGATGAATTTGTTTGGTTAATAGTAATACCTCTTTTCCAATTTCCATATATACATTGTGAATAAGTTGAAAAAGGAAGCTATCCTCTCTTAATGATGATATGTGTATCATTCATCCACG

mRNA sequence

ATGGAAGCTCAAGAAAACTTTAGCTTCCAACCCATTAATGGCGGCTCCACCCCCATCACTGAATCACCTCCTCTTGCATCAGAATCAATTGACCACCATGAGAAAGAAGATCAAAGCGATGGAAATGTTGATTGTTCTTCGGAAATAAGAAGTAATGGATGTCATAGAAAGAGCAATTCTTGCTCAGGCGATAGCAGAAGGACTAATGAGATAGCAATTAACAGCGATGACGAAGAAGATGAGAAGATGGATATGTTGTGGGAAGATTTCAATGAAGAATTGCTGAAGAATTTGAGTTCCAGATTTGGGTCTCGTCGGTTGCCAGAACTTGATGACTTGGAATCAGAGGAAGCAATGGAAGATGGCAGCAGCAGCGGGGCGATGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTTCTGTTTTTACATAATTTTCGCAGGAAGCTCAAAGCTCGGACATGGTGA

Coding sequence (CDS)

ATGGAAGCTCAAGAAAACTTTAGCTTCCAACCCATTAATGGCGGCTCCACCCCCATCACTGAATCACCTCCTCTTGCATCAGAATCAATTGACCACCATGAGAAAGAAGATCAAAGCGATGGAAATGTTGATTGTTCTTCGGAAATAAGAAGTAATGGATGTCATAGAAAGAGCAATTCTTGCTCAGGCGATAGCAGAAGGACTAATGAGATAGCAATTAACAGCGATGACGAAGAAGATGAGAAGATGGATATGTTGTGGGAAGATTTCAATGAAGAATTGCTGAAGAATTTGAGTTCCAGATTTGGGTCTCGTCGGTTGCCAGAACTTGATGACTTGGAATCAGAGGAAGCAATGGAAGATGGCAGCAGCAGCGGGGCGATGCTGTCGGCAAGGATGGCGAGTGTGGTAGTGATAATGAAGGTGCTGAAGAAGCTTCTGTTTTTACATAATTTTCGCAGGAAGCTCAAAGCTCGGACATGGTGA

Homology

[Close]

BLAST of CSPI02G24930 vs. TrEMBL
Match: A0A0A0LQ09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-81
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS 60
           MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS 60

Query: 61  CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME 120
           CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME
Sbjct: 61  CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME 120

Query: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
           DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW
Sbjct: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

[Close]

BLAST of CSPI02G24930 vs. TrEMBL
Match: M5VI77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-09
Identity = 60/172 (34.88%), Postives = 86/172 (50.00%), Query Frame = 1


Query: 3   AQENFSFQ----PINGGSTPITESPPLASESID--HHEKEDQSDGNVDCSSEIRSNGCHR 62
           A ++FSF     P    S P+    P AS  +D  +H +E++ + + +    I    C +
Sbjct: 2   ATQDFSFPTHKFPCTIDSPPLWRLSPAASSKVDDQNHSEEEEEEDDEEEIVNINVKYCDQ 61

Query: 63  KSNSCSGDSRRTNEIAINSD----DEEDEKMDMLWEDFNEELLK--NLSSRFGSRRLPEL 122
           +  S S   R T  +  + +    D  +EKMDMLWEDFNEEL    N +S +      E+
Sbjct: 62  RRKSFSYIERGTKMVEKDQESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSREM 121

Query: 123 DDLESEEAMEDGSSSGA-MLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
             L   +A +   ++G   LS R  SVV +MKVLK+L FLHN   KLK   W
Sbjct: 122 LHLGCVKAFKLTETNGDHALSTRKPSVVAVMKVLKRLFFLHNSHHKLKKPAW 173

[Close]

BLAST of CSPI02G24930 vs. TrEMBL
Match: A5AEK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026104 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 57/169 (33.73%), Postives = 85/169 (50.30%), Query Frame = 1


Query: 3   AQENFSFQPINGGSTPITESPPL--ASESIDHHE----------KEDQSDGNVDCSSEIR 62
           A E+FSF  ++       +SPPL  AS +   HE          +ED  +G    S+   
Sbjct: 2   ATEDFSFPIVSDAFPRFIDSPPLWHASSATLCHEGPTTSNTSGQQEDDEEGGCFASTSKP 61

Query: 63  SNGCHRKSNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPEL 122
            +   RKS SC     R        +D+E+++MDMLWEDFNEEL      R GS  + ++
Sbjct: 62  VDHPRRKSFSCVERGGRMAGGGDEIEDDEEDRMDMLWEDFNEELHNRCGPRSGSEEMVKV 121

Query: 123 DDLESEEAMEDGSSSGAMLSA-RMASVVVIMKVLKKLLFLHNFRRKLKA 159
             ++   A   G   GA+++A R AS++V++K+L+KL  L N     KA
Sbjct: 122 GCVQGVAAXRTG---GAVVAARRAASLLVLVKMLRKLFQLXNSHSTRKA 167

[Close]

BLAST of CSPI02G24930 vs. NCBI nr
Match: gi|778674413|ref|XP_011650206.1| (PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 1.8e-81
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS 60
           MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS 60

Query: 61  CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME 120
           CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME
Sbjct: 61  CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME 120

Query: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
           DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW
Sbjct: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

[Close]

BLAST of CSPI02G24930 vs. NCBI nr
Match: gi|659082020|ref|XP_008441623.1| (PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 7.7e-77
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 1


Query: 1   MEAQENFSFQPINGGSTPITESPPLASESIDHHEKEDQSDGNVDCSSEIRSNGCHRKSNS 60
           MEAQENF FQPING STPITESPPLAS+SIDHHEKEDQSDGN+DCSSEIRSNG HRK NS
Sbjct: 1   MEAQENFGFQPINGSSTPITESPPLASKSIDHHEKEDQSDGNIDCSSEIRSNGGHRKINS 60

Query: 61  CSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEEAME 120
           CSGDSRRTNEIAI+SDDEEDEKMDMLWEDFNEEL+KNLSSRFGSRRLPELDDLESEEAME
Sbjct: 61  CSGDSRRTNEIAIDSDDEEDEKMDMLWEDFNEELMKNLSSRFGSRRLPELDDLESEEAME 120

Query: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
           DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW
Sbjct: 121 DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 161

[Close]

BLAST of CSPI02G24930 vs. NCBI nr
Match: gi|645263609|ref|XP_008237314.1| (PREDICTED: uncharacterized protein LOC103336056 [Prunus mume])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 1


Query: 3   AQENFSFQ----PINGGSTPITESPPLASESIDH--HEKEDQSDGNVDCSSEIRSNGCHR 62
           A ++FSF     P    S P+    P AS  +D+  H +E++ + + +    I    C +
Sbjct: 2   ATQDFSFPTHKFPCTIDSPPLWRLSPAASSKVDYQNHSEEEEEEDDEEEIVNINVKYCDQ 61

Query: 63  KSNSCSGDSRRTNEIAINSD----DEEDEKMDMLWEDFNEELLK--NLSSRFGSRRLPEL 122
           +  S S   R T  +  + +    D  +EKMDMLWEDFNEEL    N +S +      E+
Sbjct: 62  RRKSFSYIERGTKMVEKDPESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSREM 121

Query: 123 DDLESEEAME-DGSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
             L   +A +   +++  +LS R  SVV +MKVLK+L FLHN  RKLK  TW
Sbjct: 122 LHLGCVKAFKLTKTNADHVLSTRKPSVVPVMKVLKRLFFLHNSHRKLKKPTW 173

[Close]

BLAST of CSPI02G24930 vs. NCBI nr
Match: gi|595791037|ref|XP_007199267.1| (hypothetical protein PRUPE_ppa022692mg [Prunus persica])

HSP 1 Score: 68.9 bits (167), Expect = 9.0e-09
Identity = 60/172 (34.88%), Postives = 86/172 (50.00%), Query Frame = 1


Query: 3   AQENFSFQ----PINGGSTPITESPPLASESID--HHEKEDQSDGNVDCSSEIRSNGCHR 62
           A ++FSF     P    S P+    P AS  +D  +H +E++ + + +    I    C +
Sbjct: 2   ATQDFSFPTHKFPCTIDSPPLWRLSPAASSKVDDQNHSEEEEEEDDEEEIVNINVKYCDQ 61

Query: 63  KSNSCSGDSRRTNEIAINSD----DEEDEKMDMLWEDFNEELLK--NLSSRFGSRRLPEL 122
           +  S S   R T  +  + +    D  +EKMDMLWEDFNEEL    N +S +      E+
Sbjct: 62  RRKSFSYIERGTKMVEKDQESRDHDHGEEKMDMLWEDFNEELKSRSNTTSDYSGGLSREM 121

Query: 123 DDLESEEAMEDGSSSGA-MLSARMASVVVIMKVLKKLLFLHNFRRKLKARTW 162
             L   +A +   ++G   LS R  SVV +MKVLK+L FLHN   KLK   W
Sbjct: 122 LHLGCVKAFKLTETNGDHALSTRKPSVVAVMKVLKRLFFLHNSHHKLKKPAW 173

[Close]

BLAST of CSPI02G24930 vs. NCBI nr
Match: gi|731430627|ref|XP_010665112.1| (PREDICTED: uncharacterized protein LOC104882672 [Vitis vinifera])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 58/169 (34.32%), Postives = 86/169 (50.89%), Query Frame = 1


Query: 3   AQENFSFQPINGGSTPITESPPL--ASESIDHHE----------KEDQSDGNVDCSSEIR 62
           A E+FSF  ++       +SPPL  AS +   HE          +ED  +G    S+   
Sbjct: 2   ATEDFSFPIVSDAFPRFIDSPPLWHASSATLCHEGPTTSNTSGQQEDDEEGGCFASTSKP 61

Query: 63  SNGCHRKSNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPEL 122
            +   RKS SC     R        +D+E+++MDMLWEDFNEEL      R GS  + ++
Sbjct: 62  VDHPRRKSFSCVERGGRMAGGGDEIEDDEEDRMDMLWEDFNEELHNRCGPRSGSEEMVKV 121

Query: 123 DDLESEEAMEDGSSSGAMLSA-RMASVVVIMKVLKKLLFLHNFRRKLKA 159
             ++   A   G   GA+++A R AS++V++K+L+KL  LHN     KA
Sbjct: 122 GCVQGVAAPRTG---GAVVAARRAASLLVLVKMLRKLFQLHNSHSTRKA 167

The following BLAST results are available for this feature:

BLAST of CSPI02G24930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G24930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ09_CUCSA	1.2e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1	[more]
M5VI77_PRUPE	6.3e-09	34.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022692mg PE=4 SV=1	[more]
A5AEK3_VITVI	1.3e-06	33.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026104 PE=4 SV=1	[more]

BLAST of CSPI02G24930 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G24930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674413\|ref\|XP_011650206.1\|	1.8e-81	100.00	PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus]	[more]
gi\|659082020\|ref\|XP_008441623.1\|	7.7e-77	95.03	PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo]	[more]
gi\|645263609\|ref\|XP_008237314.1\|	1.4e-09	35.47	PREDICTED: uncharacterized protein LOC103336056 [Prunus mume]	[more]
gi\|595791037\|ref\|XP_007199267.1\|	9.0e-09	34.88	hypothetical protein PRUPE_ppa022692mg [Prunus persica]	[more]
gi\|731430627\|ref\|XP_010665112.1\|	2.2e-07	34.32	PREDICTED: uncharacterized protein LOC104882672 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24930.1	CSPI02G24930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34666	FAMILY NOT NAMED	coord: 1..160 score: 1.3
None	No IPR available	PANTHER	PTHR34666:SF1	SUBFAMILY NOT NAMED	coord: 1..160 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G24930	Cla011912	Watermelon (97103) v1	cpiwmB167
CSPI02G24930	Csa2G402070	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G24930	MELO3C008117	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G24930	ClCG11G008210	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G24930	Lsi03G004640	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G24930	MELO3C008117.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G24930	Cla97C11G215360	Watermelon (97103) v2	cpiwmbB106
CSPI02G24930	Bhi04G002057	Wax gourd	cpiwgoB161
CSPI02G24930	Cucsa.088350	Cucumber (Gy14) v1	cgycpiB093
CSPI02G24930	CmaCh15G000300	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G24930	CmoCh15G000280	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G24930	Cp4.1LG13g11580	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G24930	Carg22867	Silver-seed gourd	carcpiB1119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G24930	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G24930	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G24930	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G24930	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G24930	Silver-seed gourd	carcpiB0018
CSPI02G24930	Cucumber (Chinese Long) v3	cpicucB081