Cp4.1LG13g11580 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g11580
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG13 : 9176781 .. 9177221 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCCAGAAGACTTCAGCTTCGAACCCATCAATGGCGGCTCCACCCCCATTACTGGATCACCTCCCCTAAGGGGCCTGCCACAAAAACCAACGGACCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGGAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGTGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

mRNA sequence

ATGGAAGCTCCAGAAGACTTCAGCTTCGAACCCATCAATGGCGGCTCCACCCCCATTACTGGATCACCTCCCCTAAGGGGCCTGCCACAAAAACCAACGGACCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGGAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGTGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

Coding sequence (CDS)

ATGGAAGCTCCAGAAGACTTCAGCTTCGAACCCATCAATGGCGGCTCCACCCCCATTACTGGATCACCTCCCCTAAGGGGCCTGCCACAAAAACCAACGGACCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGGAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGTGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

Protein sequence

MEAPEDFSFEPINGGSTPITGSPPLRGLPQKPTDRHEKEDGGCRNVGSSEKRRNDSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKEAKKDGGGRGGSSVALLSARMAGVVVMMKVLKKILFLHSFRRKLKARTS

Homology

[Close]

BLAST of Cp4.1LG13g11580 vs. TrEMBL
Match: A0A0A0LQ09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 103/167 (61.68%), Postives = 117/167 (70.06%), Query Frame = 1


Query: 1   MEAPEDFSFEPINGGSTPITGSPPLRGLPQKPTDRHEKEDGGCRNVG-SSEKRRN----- 60
           MEA E+FSF+PINGGSTPIT SPPL     +  D HEKED    NV  SSE R N     
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPLAS---ESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  ----------------DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
                           +SD+EEDEKMD+LWEDFNEELLKNLSSR+GS RLPEL+  ES+E
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSVALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SS A+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

[Close]

BLAST of Cp4.1LG13g11580 vs. NCBI nr
Match: gi|778674413|ref|XP_011650206.1| (PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 103/167 (61.68%), Postives = 117/167 (70.06%), Query Frame = 1


Query: 1   MEAPEDFSFEPINGGSTPITGSPPLRGLPQKPTDRHEKEDGGCRNVG-SSEKRRN----- 60
           MEA E+FSF+PINGGSTPIT SPPL     +  D HEKED    NV  SSE R N     
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPLAS---ESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  ----------------DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
                           +SD+EEDEKMD+LWEDFNEELLKNLSSR+GS RLPEL+  ES+E
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSVALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SS A+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

[Close]

BLAST of Cp4.1LG13g11580 vs. NCBI nr
Match: gi|659082020|ref|XP_008441623.1| (PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 3.5e-36
Identity = 101/167 (60.48%), Postives = 116/167 (69.46%), Query Frame = 1


Query: 1   MEAPEDFSFEPINGGSTPITGSPPLRGLPQKPTDRHEKED---------------GGCRN 60
           MEA E+F F+PING STPIT SPPL     K  D HEKED               GG R 
Sbjct: 1   MEAQENFGFQPINGSSTPITESPPLAS---KSIDHHEKEDQSDGNIDCSSEIRSNGGHRK 60

Query: 61  VGS--SEKRRN-----DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
           + S   + RR      DSD+EEDEKMD+LWEDFNEEL+KNLSSR+GS RLPEL+  ES+E
Sbjct: 61  INSCSGDSRRTNEIAIDSDDEEDEKMDMLWEDFNEELMKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSVALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SS A+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g11580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g11580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ09_CUCSA	1.1e-36	61.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g11580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g11580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674413\|ref\|XP_011650206.1\|	1.6e-36	61.68	PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus]	[more]
gi\|659082020\|ref\|XP_008441623.1\|	3.5e-36	60.48	PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g11580.1	Cp4.1LG13g11580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34666	FAMILY NOT NAMED	coord: 37..146 score: 3.8
None	No IPR available	PANTHER	PTHR34666:SF1	SUBFAMILY NOT NAMED	coord: 37..146 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g11580	Cucsa.088350	Cucumber (Gy14) v1	cgycpeB0162
Cp4.1LG13g11580	CmaCh15G000300	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g11580	CmoCh15G000280	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g11580	Cla011912	Watermelon (97103) v1	cpewmB192
Cp4.1LG13g11580	Csa2G402070	Cucumber (Chinese Long) v2	cpecuB167
Cp4.1LG13g11580	MELO3C008117	Melon (DHL92) v3.5.1	cpemeB167
Cp4.1LG13g11580	ClCG11G008210	Watermelon (Charleston Gray)	cpewcgB160
Cp4.1LG13g11580	CSPI02G24930	Wild cucumber (PI 183967)	cpecpiB168
Cp4.1LG13g11580	Lsi03G004640	Bottle gourd (USVL1VR-Ls)	cpelsiB143
Cp4.1LG13g11580	MELO3C008117.2	Melon (DHL92) v3.6.1	cpemedB199
Cp4.1LG13g11580	Bhi04G002057	Wax gourd	cpewgoB0247
Cp4.1LG13g11580	Carg22867	Silver-seed gourd	carcpeB1508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG13g11580	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g11580	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g11580	Cucumber (Gy14) v2	cgybcpeB183
Cp4.1LG13g11580	Silver-seed gourd	carcpeB0031
Cp4.1LG13g11580	Cucumber (Chinese Long) v3	cpecucB0195
Cp4.1LG13g11580	Cucurbita pepo (Zucchini)	cpecpeB199