Lsi03G004060 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G004060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 4644857 .. 4645204 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

mRNA sequence

ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Coding sequence (CDS)

ATGGATTCAAGCTTTAGAGCAAGAGGCCTTGTGAAGGCCATGTTGGGTCCTCTCCATGGGGAAGCTATGGCTGGCAGCAGAAAGACAAAGACAAAGCCAACCACGACGATCACGTCCAACGCTTCGTCGTGTTCGAGTCATGTTTCGTTTATGGTTCATCACCAAGAAAGGGGAATGATAGCTCCGTCGAACCATCGAGTTGTTCATGATCAATCCATGAATAATGTTCACGAGGCGAACTTTTGGAACCCTTACGGTGTCGGTGTGGATGAACATATCGATCGGAAGGCGGCCATGTACATATCATCGGTGCAAGAACGCTTTAAACTTGAGGGCTTAATCAATTGA

Protein sequence

MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN
Homology
[Close]
BLAST of Lsi03G004060 vs. TrEMBL
Match: A0A0A0LQT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-42
Identity = 91/115 (79.13%), Postives = 99/115 (86.09%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MDS  RARGLVK M+GPLHGEAM GSR +K  PTT   SNAS CSSH+SF VHHQER ++
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSR-SKITPTT---SNASLCSSHISFTVHHQERALM 60

Query: 61  APSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           APSNHRVVHDQ+MNNVHEA  WN YGVGVDEHIDRKA++YISSVQERFKLEGLIN
Sbjct: 61  APSNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]
BLAST of Lsi03G004060 vs. TrEMBL
Match: V4TIP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017736mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNAIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

[Close]
BLAST of Lsi03G004060 vs. TrEMBL
Match: A0A067DD87_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047605mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-06
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNEIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

[Close]
BLAST of Lsi03G004060 vs. NCBI nr
Match: gi|700208038|gb|KGN63157.1| (hypothetical protein Csa_2G406070 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.6e-42
Identity = 91/115 (79.13%), Postives = 99/115 (86.09%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASSCSSHVSFMVHHQERGMI 60
           MDS  RARGLVK M+GPLHGEAM GSR +K  PTT   SNAS CSSH+SF VHHQER ++
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSR-SKITPTT---SNASLCSSHISFTVHHQERALM 60

Query: 61  APSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLEGLIN 116
           APSNHRVVHDQ+MNNVHEA  WN YGVGVDEHIDRKA++YISSVQERFKLEGLIN
Sbjct: 61  APSNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]
BLAST of Lsi03G004060 vs. NCBI nr
Match: gi|567909449|ref|XP_006447038.1| (hypothetical protein CICLE_v10017736mg [Citrus clementina])

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNAIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

[Close]
BLAST of Lsi03G004060 vs. NCBI nr
Match: gi|641808787|gb|KDO36591.1| (hypothetical protein CISIN_1g047605mg [Citrus sinensis])

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-06
Identity = 44/122 (36.07%), Postives = 61/122 (50.00%), Query Frame = 1 

Query: 1   MDSSFRARGLVKAMLGPLHGEAMAGSRKTKTKPTTTITSNASS-CSSHVSFMVHH----- 60
           M++S + RG +K  L PL+  A + +  T       I S+ SS  ++ V ++VH      
Sbjct: 1   METSRKGRGFIKGKLMPLYSGAKSSASSTVQYSNNEIKSSQSSPAAATVGYVVHQDYLIA 60

Query: 61  ---QERGMIAPSNHRVVHDQSMNNVHEANFWNPYGVGVDEHIDRKAAMYISSVQERFKLE 114
              Q    I PS     HD ++N  H     +   +  DE +D KAA YISSVQERFKLE
Sbjct: 61  QPKQNVSFIVPS---APHDNNVNRDHHQKLSHFETLFGDESVDIKAASYISSVQERFKLE 119

The following BLAST results are available for this feature:
BLAST of Lsi03G004060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G004060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQT5_CUCSA1.8e-4279.13Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1[more]
V4TIP5_9ROSI4.6e-0636.07Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017736mg PE=4 SV=1[more]
A0A067DD87_CITSI6.0e-0636.07Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047605mg PE=4 SV=1[more]
BLAST of Lsi03G004060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G004060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208038|gb|KGN63157.1|2.6e-4279.13hypothetical protein Csa_2G406070 [Cucumis sativus][more]
gi|567909449|ref|XP_006447038.1|6.6e-0636.07hypothetical protein CICLE_v10017736mg [Citrus clementina][more]
gi|641808787|gb|KDO36591.1|8.7e-0636.07hypothetical protein CISIN_1g047605mg [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G004060.1Lsi03G004060.1mRNA