CmoCh04G031010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 21570704 .. 21571021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCCAGCAGCAGAAACACGAAGCCGACGGCGACGTTGTTGAACGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTCGATCAGCTGA

mRNA sequence

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCCAGCAGCAGAAACACGAAGCCGACGGCGACGTTGTTGAACGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTCGATCAGCTGA

Coding sequence (CDS)

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCCAGCAGCAGAAACACGAAGCCGACGGCGACGTTGTTGAACGCATCGTCGTGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTATATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTCGATCAGCTGA

Homology

[Close]

BLAST of CmoCh04G031010 vs. TrEMBL
Match: A0A0A0LQT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-26
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR+ K T T  NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 106
           SN RVVH+    NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEG I+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]

BLAST of CmoCh04G031010 vs. NCBI nr
Match: gi|700208038|gb|KGN63157.1| (hypothetical protein Csa_2G406070 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR+ K T T  NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 106
           SN RVVH+    NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEG I+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

The following BLAST results are available for this feature:

BLAST of CmoCh04G031010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQT5_CUCSA	1.6e-26	66.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1	[more]

BLAST of CmoCh04G031010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208038\|gb\|KGN63157.1\|	2.4e-26	66.37	hypothetical protein Csa_2G406070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031010.1	CmoCh04G031010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031010	CmaCh15G000720	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G031010	CmaCh04G029800	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031010	Csa2G406070	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031010	MELO3C008176	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031010	CSPI02G25510	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031010	Lsi03G004060	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G031010	Cp4.1LG13g11230	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G031010	MELO3C008176.2	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G031010	CsaV3_2G034030	Cucumber (Chinese Long) v3	cmocucB0812
CmoCh04G031010	Cla97C11G214590	Watermelon (97103) v2	cmowmbB705
CmoCh04G031010	Bhi04G001998	Wax gourd	cmowgoB0857
CmoCh04G031010	CsGy2G025130	Cucumber (Gy14) v2	cgybcmoB236

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G031010	CmoCh15G000710	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031010	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031010	Silver-seed gourd	carcmoB0033
CmoCh04G031010	Silver-seed gourd	carcmoB1360
CmoCh04G031010	Cucumber (Gy14) v1	cgycmoB0166