CmoCh15G000710 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G000710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 388401 .. 388700 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA

mRNA sequence

ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA

Coding sequence (CDS)

ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA
Homology
[Close]
BLAST of CmoCh15G000710 vs. TrEMBL
Match: A0A0A0LQT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 1 

Query: 1   MDARCRARGLVKGMLGPLHGEGMAS--------------CSSHVAFMVHRQERAAMAPSN 60
           MD+RCRARGLVKGM+GPLHGE M                CSSH++F VH QERA MAPSN
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSN 60

Query: 61  QRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
            RVVHDQAMNNV EA   N  G G   DEHIDRKA++YISSVQERF+LEGLIN
Sbjct: 61  HRVVHDQAMNNVHEATLWNLYGVG--VDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]
BLAST of CmoCh15G000710 vs. NCBI nr
Match: gi|700208038|gb|KGN63157.1| (hypothetical protein Csa_2G406070 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.7e-31
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 1 

Query: 1   MDARCRARGLVKGMLGPLHGEGMAS--------------CSSHVAFMVHRQERAAMAPSN 60
           MD+RCRARGLVKGM+GPLHGE M                CSSH++F VH QERA MAPSN
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSN 60

Query: 61  QRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
            RVVHDQAMNNV EA   N  G G   DEHIDRKA++YISSVQERF+LEGLIN
Sbjct: 61  HRVVHDQAMNNVHEATLWNLYGVG--VDEHIDRKASLYISSVQERFKLEGLIN 111

The following BLAST results are available for this feature:
BLAST of CmoCh15G000710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G000710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQT5_CUCSA4.7e-3166.37Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1[more]
BLAST of CmoCh15G000710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G000710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208038|gb|KGN63157.1|6.7e-3166.37hypothetical protein Csa_2G406070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G000710.1CmoCh15G000710.1mRNA