Cp4.1LG01g25900 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 20977957 .. 20978274 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

mRNA sequence

ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Coding sequence (CDS)

ATGGATTCAAGGTGCAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCGAGCAGCAGAAACACGAAGCCAACGGGGACGTCGTTGAATGCATCGTCATGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGCGAAGATGGCTTCGTCGAACCAAAGGGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTATGGCGTTGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Protein sequence

MDSRCRSARPLVPHGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMASSNQRVVHEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS
Homology
[Close]
BLAST of Cp4.1LG01g25900 vs. TrEMBL
Match: A0A0A0LQT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-27
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 1 

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR+ K T T+ NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           SN RVVH+    NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

[Close]
BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match: gi|700208038|gb|KGN63157.1| (hypothetical protein Csa_2G406070 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 1 

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTGTSLNASSCSCHVSFMVHHQERAKMAS 60
           MDSRCR AR LV       HGEAM  SR+ K T T+ NAS CS H+SF VHHQERA MA 
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRS-KITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  SNQRVVHEAM--NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           SN RVVH+    NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g25900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQT5_CUCSA2.5e-2767.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406070 PE=4 SV=1[more]
BLAST of Cp4.1LG01g25900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g25900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208038|gb|KGN63157.1|3.6e-2767.26hypothetical protein Csa_2G406070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25900.1Cp4.1LG01g25900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g25900Lsi03G004060Bottle gourd (USVL1VR-Ls)cpelsiB339
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g25900Cp4.1LG13g11230Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25900Cucumber (Gy14) v2cgybcpeB214
Cp4.1LG01g25900Melon (DHL92) v3.6.1cpemedB465
Cp4.1LG01g25900Silver-seed gourdcarcpeB0034
Cp4.1LG01g25900Silver-seed gourdcarcpeB1408
Cp4.1LG01g25900Cucumber (Chinese Long) v3cpecucB0482
Cp4.1LG01g25900Wax gourdcpewgoB0525
Cp4.1LG01g25900Cucumber (Gy14) v1cgycpeB0164
Cp4.1LG01g25900Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g25900Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g25900Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g25900Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25900Wild cucumber (PI 183967)cpecpiB385
Cp4.1LG01g25900Cucumber (Chinese Long) v2cpecuB386
Cp4.1LG01g25900Melon (DHL92) v3.5.1cpemeB400