Lsi02G026310 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G026310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDomain of unknown function (DUF966)
Locationchr02 : 32718646 .. 32718897 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

mRNA sequence

ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

Coding sequence (CDS)

ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

Protein sequence

MKLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWMNFVHSSPFLRLN
Homology
[Close]
BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A0A0K8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

[Close]
BLAST of Lsi02G026310 vs. TrEMBL
Match: A5ARD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1 

Query: 2   KLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVW 61
           ++ KR  ME  KGGEVR++HIIYFLSRMG VEQPHLIRVHHL         GVYLR    
Sbjct: 508 RIIKRRSMEG-KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHL------NRNGVYLRD--- 563

Query: 62  VFLLCLKRWMN 73
                +KRW++
Sbjct: 568 -----VKRWLS 563

[Close]
BLAST of Lsi02G026310 vs. TrEMBL
Match: F6GZ24_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 13 KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWMN 72
          KGGEVR++HIIYFLSRMG VEQPHLIRVHHL         GVYLR         +KRW++
Sbjct: 4  KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHL------NRNGVYLRD--------VKRWLS 49

[Close]
BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A067J9D7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05254 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          +KGGEVR++HIIYFLSR+G +EQPHLIRVHHL         GVYLR         +KRWM
Sbjct: 2  HKGGEVRRLHIIYFLSRLGRIEQPHLIRVHHLY------RNGVYLRD--------VKRWM 47

[Close]
BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A067D083_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 

Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          N GGEVR++HI+YFLSR+G V+ PHLIRVHHL+        GVYLR         +KRW+
Sbjct: 16 NNGGEVRRIHIVYFLSRLGQVDHPHLIRVHHLS------RNGVYLRD--------VKRWL 61

[Close]
BLAST of Lsi02G026310 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966))

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-10
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 

Query: 9  MEANKGG-EVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCL 68
          ME+N GG EVR+V+++YFLSR GHV+ PHL+RVHHL+  G              VFL  +
Sbjct: 1  MESNGGGGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRNG--------------VFLRDV 50

Query: 69 KRWM 72
          K+W+
Sbjct: 61 KKWL 50

[Close]
BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122595|ref|XP_008461227.1| (PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-17
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MKLRKRALMEAN---KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLR 60
          MKLRKRALMEAN   +GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR
Sbjct: 4  MKLRKRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLR 63

Query: 61 GMVWVFLLCLKRWM 72
                   +KRW+
Sbjct: 64 D--------VKRWL 65

[Close]
BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122593|ref|XP_008461226.1| (PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-17
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1 

Query: 1  MKLRKRALMEAN---KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLR 60
          MKLRKRALMEAN   +GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR
Sbjct: 4  MKLRKRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLR 63

Query: 61 GMVWVFLLCLKRWM 72
                   +KRW+
Sbjct: 64 D--------VKRWL 65

[Close]
BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122597|ref|XP_008461228.1| (PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Sbjct: 7  NRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLRD--------VKRWL 54

[Close]
BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|700189951|gb|KGN45184.1| (hypothetical protein Csa_7G430190 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

[Close]
BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|778728810|ref|XP_004136105.2| (PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1 

Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

The following BLAST results are available for this feature:
BLAST of Lsi02G026310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi02G026310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H4_CUCSA1.8e-1265.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1[more]
A5ARD3_VITVI3.2e-0956.34Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1[more]
F6GZ24_VITVI9.4e-0960.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=... [more]
A0A067J9D7_JATCU1.6e-0858.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05254 PE=4 SV=1[more]
A0A067D083_CITSI7.9e-0853.33Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 S... [more]
BLAST of Lsi02G026310 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05577.17.6e-1048.44 Domain of unknown function (DUF966)[more]
BLAST of Lsi02G026310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122595|ref|XP_008461227.1|3.5e-1771.62PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo][more]
gi|659122593|ref|XP_008461226.1|3.5e-1771.62PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo][more]
gi|659122597|ref|XP_008461228.1|4.0e-1370.00PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo][more]
gi|700189951|gb|KGN45184.1|2.6e-1265.67hypothetical protein Csa_7G430190 [Cucumis sativus][more]
gi|778728810|ref|XP_004136105.2|2.6e-1265.67PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G026310.1Lsi02G026310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31083FAMILY NOT NAMEDcoord: 1..57
score: 2.2
NoneNo IPR availablePANTHERPTHR31083:SF5SUBFAMILY NOT NAMEDcoord: 1..57
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi02G026310Csa7G430190Cucumber (Chinese Long) v2culsiB503
Lsi02G026310CSPI07G19760Wild cucumber (PI 183967)cpilsiB517
Lsi02G026310Cp4.1LG12g07160Cucurbita pepo (Zucchini)cpelsiB113
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi02G026310Cucumber (Gy14) v1cgylsiB030
Lsi02G026310Cucurbita maxima (Rimu)cmalsiB348
Lsi02G026310Cucurbita maxima (Rimu)cmalsiB418
Lsi02G026310Cucurbita maxima (Rimu)cmalsiB822
Lsi02G026310Cucurbita moschata (Rifu)cmolsiB337
Lsi02G026310Cucurbita moschata (Rifu)cmolsiB404
Lsi02G026310Cucurbita moschata (Rifu)cmolsiB809
Lsi02G026310Cucurbita pepo (Zucchini)cpelsiB262
Lsi02G026310Cucurbita pepo (Zucchini)cpelsiB443
Lsi02G026310Wild cucumber (PI 183967)cpilsiB171
Lsi02G026310Cucumber (Chinese Long) v2culsiB172
Lsi02G026310Melon (DHL92) v3.5.1lsimeB185
Lsi02G026310Watermelon (Charleston Gray)lsiwcgB160
Lsi02G026310Watermelon (Charleston Gray)lsiwcgB162
Lsi02G026310Watermelon (97103) v1lsiwmB176
Lsi02G026310Watermelon (97103) v1lsiwmB178
Lsi02G026310Cucumber (Gy14) v2cgyblsiB156
Lsi02G026310Cucumber (Gy14) v2cgyblsiB472
Lsi02G026310Melon (DHL92) v3.6.1lsimedB194
Lsi02G026310Silver-seed gourdcarlsiB321
Lsi02G026310Silver-seed gourdcarlsiB409
Lsi02G026310Silver-seed gourdcarlsiB747
Lsi02G026310Cucumber (Chinese Long) v3cuclsiB538
Lsi02G026310Watermelon (97103) v2lsiwmbB162
Lsi02G026310Watermelon (97103) v2lsiwmbB213
Lsi02G026310Wax gourdlsiwgoB202
Lsi02G026310Wax gourdlsiwgoB279