Lsi02G026310 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G026310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Domain of unknown function (DUF966)
Location	chr02 : 32718646 .. 32718897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

mRNA sequence

ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

Coding sequence (CDS)

ATGAAGCTTAGAAAGAGAGCGTTAATGGAGGCTAATAAAGGTGGAGAAGTTAGAAAAGTTCATATTATTTACTTTCTTAGCCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGCGCCGGCGGAGGCGGAGGTGGCGGCGTTTATCTCCGAGGTATGGTTTGGGTTTTCCTTCTTTGTTTAAAAAGATGGATGAATTTTGTTCATTCATCTCCTTTCTTGCGATTGAATTAG

Protein sequence

MKLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWMNFVHSSPFLRLN

Homology

[Close]

BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A0A0K8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

[Close]

BLAST of Lsi02G026310 vs. TrEMBL
Match: A5ARD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.2e-09
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 2   KLRKRALMEANKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVW 61
           ++ KR  ME  KGGEVR++HIIYFLSRMG VEQPHLIRVHHL         GVYLR    
Sbjct: 508 RIIKRRSMEG-KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHL------NRNGVYLRD--- 563

Query: 62  VFLLCLKRWMN 73
                +KRW++
Sbjct: 568 -----VKRWLS 563

[Close]

BLAST of Lsi02G026310 vs. TrEMBL
Match: F6GZ24_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 13 KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWMN 72
          KGGEVR++HIIYFLSRMG VEQPHLIRVHHL         GVYLR         +KRW++
Sbjct: 4  KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHL------NRNGVYLRD--------VKRWLS 49

[Close]

BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A067J9D7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05254 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          +KGGEVR++HIIYFLSR+G +EQPHLIRVHHL         GVYLR         +KRWM
Sbjct: 2  HKGGEVRRLHIIYFLSRLGRIEQPHLIRVHHLY------RNGVYLRD--------VKRWM 47

[Close]

BLAST of Lsi02G026310 vs. TrEMBL
Match: A0A067D083_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.9e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1


Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          N GGEVR++HI+YFLSR+G V+ PHLIRVHHL+        GVYLR         +KRW+
Sbjct: 16 NNGGEVRRIHIVYFLSRLGQVDHPHLIRVHHLS------RNGVYLRD--------VKRWL 61

[Close]

BLAST of Lsi02G026310 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966))

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-10
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 9  MEANKGG-EVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCL 68
          ME+N GG EVR+V+++YFLSR GHV+ PHL+RVHHL+  G              VFL  +
Sbjct: 1  MESNGGGGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRNG--------------VFLRDV 50

Query: 69 KRWM 72
          K+W+
Sbjct: 61 KKWL 50

[Close]

BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122595|ref|XP_008461227.1| (PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-17
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 1  MKLRKRALMEAN---KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLR 60
          MKLRKRALMEAN   +GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR
Sbjct: 4  MKLRKRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLR 63

Query: 61 GMVWVFLLCLKRWM 72
                   +KRW+
Sbjct: 64 D--------VKRWL 65

[Close]

BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122593|ref|XP_008461226.1| (PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.5e-17
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 1  MKLRKRALMEAN---KGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLR 60
          MKLRKRALMEAN   +GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR
Sbjct: 4  MKLRKRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLR 63

Query: 61 GMVWVFLLCLKRWM 72
                   +KRW+
Sbjct: 64 D--------VKRWL 65

[Close]

BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|659122597|ref|XP_008461228.1| (PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 1


Query: 12 NKGGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFLLCLKRWM 71
          N+GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLAGA     GGVYLR         +KRW+
Sbjct: 7  NRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGA----SGGVYLRD--------VKRWL 54

[Close]

BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|700189951|gb|KGN45184.1| (hypothetical protein Csa_7G430190 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

[Close]

BLAST of Lsi02G026310 vs. NCBI nr
Match: gi|778728810|ref|XP_004136105.2| (PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 44/67 (65.67%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 9  MEANK----GGEVRKVHIIYFLSRMGHVEQPHLIRVHHLAGAGGGGGGGVYLRGMVWVFL 68
          MEAN     GGE+RKVHIIYFLSRMGHVEQPHLIRVHHLA    GG  GVYLR       
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLA----GGSAGVYLRD------ 55

Query: 69 LCLKRWM 72
            +KRW+
Sbjct: 61 --VKRWL 55

The following BLAST results are available for this feature:

BLAST of Lsi02G026310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G026310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H4_CUCSA	1.8e-12	65.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1	[more]
A5ARD3_VITVI	3.2e-09	56.34	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1	[more]
F6GZ24_VITVI	9.4e-09	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=...	[more]
A0A067J9D7_JATCU	1.6e-08	58.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05254 PE=4 SV=1	[more]
A0A067D083_CITSI	7.9e-08	53.33	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 S...	[more]

BLAST of Lsi02G026310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05577.1	7.6e-10	48.44	Domain of unknown function (DUF966)	[more]

BLAST of Lsi02G026310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122595\|ref\|XP_008461227.1\|	3.5e-17	71.62	PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo]	[more]
gi\|659122593\|ref\|XP_008461226.1\|	3.5e-17	71.62	PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo]	[more]
gi\|659122597\|ref\|XP_008461228.1\|	4.0e-13	70.00	PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo]	[more]
gi\|700189951\|gb\|KGN45184.1\|	2.6e-12	65.67	hypothetical protein Csa_7G430190 [Cucumis sativus]	[more]
gi\|778728810\|ref\|XP_004136105.2\|	2.6e-12	65.67	PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G026310.1	Lsi02G026310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31083	FAMILY NOT NAMED	coord: 1..57 score: 2.2
None	No IPR available	PANTHER	PTHR31083:SF5	SUBFAMILY NOT NAMED	coord: 1..57 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G026310	Csa7G430190	Cucumber (Chinese Long) v2	culsiB503
Lsi02G026310	CSPI07G19760	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G026310	Cp4.1LG12g07160	Cucurbita pepo (Zucchini)	cpelsiB113

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G026310	Cucumber (Gy14) v2	cgyblsiB156
Lsi02G026310	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G026310	Melon (DHL92) v3.6.1	lsimedB194
Lsi02G026310	Silver-seed gourd	carlsiB321
Lsi02G026310	Silver-seed gourd	carlsiB409
Lsi02G026310	Silver-seed gourd	carlsiB747
Lsi02G026310	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G026310	Watermelon (97103) v2	lsiwmbB162
Lsi02G026310	Watermelon (97103) v2	lsiwmbB213
Lsi02G026310	Wax gourd	lsiwgoB202
Lsi02G026310	Wax gourd	lsiwgoB279
Lsi02G026310	Cucumber (Gy14) v1	cgylsiB030
Lsi02G026310	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G026310	Cucurbita maxima (Rimu)	cmalsiB418
Lsi02G026310	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G026310	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G026310	Cucurbita moschata (Rifu)	cmolsiB404
Lsi02G026310	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G026310	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G026310	Cucurbita pepo (Zucchini)	cpelsiB443
Lsi02G026310	Wild cucumber (PI 183967)	cpilsiB171
Lsi02G026310	Cucumber (Chinese Long) v2	culsiB172
Lsi02G026310	Melon (DHL92) v3.5.1	lsimeB185
Lsi02G026310	Watermelon (Charleston Gray)	lsiwcgB160
Lsi02G026310	Watermelon (Charleston Gray)	lsiwcgB162
Lsi02G026310	Watermelon (97103) v1	lsiwmB176
Lsi02G026310	Watermelon (97103) v1	lsiwmB178