Csa7G430190 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G430190
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Auxin-regulated protein, putative, expressed; contains IPR010369 (Protein of unknown function DUF966)
Location	Chr7 : 16751149 .. 16751867 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGGTCTGTGCTCTGGGATTTTTCTAATTTTCTTCATTCGTCTCCTTTCTTGCCATTGAATTATCATTGAAGTTAATGTTATAAATGTATAACATAATTTATGGGCCTTAATGTTTGAATTTAATTGTGATTTTAAATTAGCAGTGTATTAGAACACACGCTATTATTCTTAAATGTTATTTCTTAATCTCTAATTAAAATTTGTTTATTTGTTCAAGTACATCAATTGCAAAAATGAGGAAATAAGTATTCAACTTAGACTTCATACTATTATTGATATCTATAATCACTTATTATATCATTTTAGGATTTAAAATTTAAACAGGAGTTGTTTTAGTTCAATTATTGTTGCATGAGTGTGAATGGAAACATCTAACATTTTTAATAAATAAGTTATAATCTTCGAATTGATTTGTTTTCGGCTAATTTAACATCTAACTTATAAATCATAATTAATATGAAATGAATATTTTTCTTTTTTTGTGTGCGTGTGTGTGAAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGGTAA

mRNA sequence

ATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGGTAA

Coding sequence (CDS)

ATGGAGGCTAATAATAATAATAGAGCTGGAGGAGAAATTAGAAAAGTCCATATTATTTACTTTCTTTCCCGTATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGGAGGAAGCGCCGGCGTTTATCTTCGAGATGTAAAGAGATGGCTTGGGGAATTGAGAGGAAAGGAAATGGCAGAAGCCTTCTCATGGTCTTACAAAAGGTAA

Protein sequence

MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKR*

Homology

[Close]

BLAST of Csa7G430190 vs. Swiss-Prot
Match: UFC_ARATH (Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.6e-06
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 14  RKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKR 73
           R+V ++Y+L+R GH+E PH I V  ++  +  + LRDV   L  LRGK M   ++WS KR
Sbjct: 44  RRVQVVYYLTRNGHLEHPHFIEV--ISPVNQPLRLRDVMNRLTILRGKCMTSQYAWSCKR 101

[Close]

BLAST of Csa7G430190 vs. TrEMBL
Match: A0A0A0K8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60

Query: 61 KEMAEAFSWSYKR 74
          KEMAEAFSWSYKR
Sbjct: 61 KEMAEAFSWSYKR 73

[Close]

BLAST of Csa7G430190 vs. TrEMBL
Match: F6GZ24_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-22
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 10 GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSW 69
          GGE+R++HIIYFLSRMG VEQPHLIRVHHL     GVYLRDVKRWL +LRGKEMAEAF+W
Sbjct: 5  GGEVRRLHIIYFLSRMGRVEQPHLIRVHHL--NRNGVYLRDVKRWLSDLRGKEMAEAFAW 64

Query: 70 SYKR 74
          SYKR
Sbjct: 65 SYKR 66

[Close]

BLAST of Csa7G430190 vs. TrEMBL
Match: A5ARD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-22
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 10  GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSW 69
           GGE+R++HIIYFLSRMG VEQPHLIRVHHL     GVYLRDVKRWL +LRGKEMAEAF+W
Sbjct: 519 GGEVRRLHIIYFLSRMGRVEQPHLIRVHHL--NRNGVYLRDVKRWLSDLRGKEMAEAFAW 578

Query: 70  SYKR 74
           SYKR
Sbjct: 579 SYKR 580

[Close]

BLAST of Csa7G430190 vs. TrEMBL
Match: A0A067D083_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.6e-22
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 4  NNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEM 63
          NNN   GGE+R++HI+YFLSR+G V+ PHLIRVHHL+    GVYLRDVKRWL E+RGK+M
Sbjct: 12 NNNINNGGEVRRIHIVYFLSRLGQVDHPHLIRVHHLSRN--GVYLRDVKRWLAEVRGKDM 71

Query: 64 AEAFSWSYKR 74
           EAFSWSYKR
Sbjct: 72 PEAFSWSYKR 79

[Close]

BLAST of Csa7G430190 vs. TrEMBL
Match: A0A068UGS6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024979001 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-21
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 6  NNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAE 65
          +N+ G E+R++H+IYFLSR G +EQPHLIRVHHL+    GV+LRDVKRWLGELRGK+M E
Sbjct: 3  SNQVGAEVRRIHVIYFLSRKGRIEQPHLIRVHHLSRN--GVHLRDVKRWLGELRGKDMPE 62

Query: 66 AFSWSYKR 74
          +FSWSYKR
Sbjct: 63 SFSWSYKR 68

[Close]

BLAST of Csa7G430190 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966))

HSP 1 Score: 93.2 bits (230), Expect = 7.2e-20
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 6  NNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAE 65
          +N  GGE+R+V+++YFLSR GHV+ PHL+RVHHL+    GV+LRDVK+WL + RG  M +
Sbjct: 3  SNGGGGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRN--GVFLRDVKKWLADARGDAMPD 62

Query: 66 AFSWSYKR 74
          AFSWS KR
Sbjct: 63 AFSWSCKR 68

[Close]

BLAST of Csa7G430190 vs. TAIR10
Match: AT5G59790.1 (AT5G59790.1 Domain of unknown function (DUF966))

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 1


Query: 14  RKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKR 73
           RKV ++Y+L R G ++ PH I V        G+YL+DV   L +LRGK MA  +SWS KR
Sbjct: 45  RKVPVVYYLCRNGQLDHPHFIEV--TLSSHDGLYLKDVINRLNDLRGKGMASLYSWSSKR 102

[Close]

BLAST of Csa7G430190 vs. TAIR10
Match: AT2G28150.1 (AT2G28150.1 Domain of unknown function (DUF966))

HSP 1 Score: 56.2 bits (134), Expect = 9.8e-09
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 12 EIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSY 71
          +I+KV I+Y+LS+   +E PH + V  L     G+YLRDV   L  LRG+ MA  +SWS 
Sbjct: 30 KIKKVQIVYYLSKNRQLEHPHFMEV--LISSPNGLYLRDVIERLNVLRGRGMASMYSWSS 89

Query: 72 KR 74
          KR
Sbjct: 90 KR 89

[Close]

BLAST of Csa7G430190 vs. TAIR10
Match: AT5G10150.1 (AT5G10150.1 Domain of unknown function (DUF966))

HSP 1 Score: 51.2 bits (121), Expect = 3.1e-07
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 14  RKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKR 73
           R+V ++Y+L+R GH+E PH I V  ++  +  + LRDV   L  LRGK M   ++WS KR
Sbjct: 44  RRVQVVYYLTRNGHLEHPHFIEV--ISPVNQPLRLRDVMNRLTILRGKCMTSQYAWSCKR 101

[Close]

BLAST of Csa7G430190 vs. TAIR10
Match: AT3G46110.1 (AT3G46110.1 Domain of unknown function (DUF966))

HSP 1 Score: 51.2 bits (121), Expect = 3.1e-07
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 14 RKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRGKEMAEAFSWSYKR 73
          R V ++Y+LSR G ++ PH I V        G+YL+DV   L +LRG  MA  +SWS KR
Sbjct: 18 RIVPVVYYLSRNGRLDHPHFIEVP--LSSHNGLYLKDVINRLNDLRGNGMACLYSWSSKR 75

[Close]

BLAST of Csa7G430190 vs. NCBI nr
Match: gi|778728810|ref|XP_004136105.2| (PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60

Query: 61 KEMAEAFSWSYKR 74
          KEMAEAFSWSYKR
Sbjct: 61 KEMAEAFSWSYKR 73

[Close]

BLAST of Csa7G430190 vs. NCBI nr
Match: gi|700189951|gb|KGN45184.1| (hypothetical protein Csa_7G430190 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG
Sbjct: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60

Query: 61 KEMAEAFSWSYKR 74
          KEMAEAFSWSYKR
Sbjct: 61 KEMAEAFSWSYKR 73

[Close]

BLAST of Csa7G430190 vs. NCBI nr
Match: gi|659122595|ref|XP_008461227.1| (PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNR GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAG S GVYLRDVKRWLGELRG
Sbjct: 12 MEANNNNR-GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVKRWLGELRG 71

Query: 61 KEMAEAFSWSYKR 74
          KEM EAFSWSYKR
Sbjct: 72 KEMPEAFSWSYKR 83

[Close]

BLAST of Csa7G430190 vs. NCBI nr
Match: gi|659122597|ref|XP_008461228.1| (PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNR GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAG S GVYLRDVKRWLGELRG
Sbjct: 1  MEANNNNR-GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVKRWLGELRG 60

Query: 61 KEMAEAFSWSYKR 74
          KEM EAFSWSYKR
Sbjct: 61 KEMPEAFSWSYKR 72

[Close]

BLAST of Csa7G430190 vs. NCBI nr
Match: gi|659122593|ref|XP_008461226.1| (PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1


Query: 1  MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVKRWLGELRG 60
          MEANNNNR GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAG S GVYLRDVKRWLGELRG
Sbjct: 12 MEANNNNR-GGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVKRWLGELRG 71

Query: 61 KEMAEAFSWSYKR 74
          KEM EAFSWSYKR
Sbjct: 72 KEMPEAFSWSYKR 83

The following BLAST results are available for this feature:

BLAST of Csa7G430190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UFC_ARATH	5.6e-06	43.33	Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1	[more]

BLAST of Csa7G430190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H4_CUCSA	4.0e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1	[more]
F6GZ24_VITVI	6.6e-22	81.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=...	[more]
A5ARD3_VITVI	6.6e-22	81.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1	[more]
A0A067D083_CITSI	6.6e-22	71.43	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 S...	[more]
A0A068UGS6_COFCA	3.3e-21	70.59	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024979001 PE=4 SV=1	[more]

BLAST of Csa7G430190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05577.1	7.2e-20	60.29	Domain of unknown function (DUF966)	[more]
AT5G59790.1	9.8e-09	46.67	Domain of unknown function (DUF966)	[more]
AT2G28150.1	9.8e-09	46.77	Domain of unknown function (DUF966)	[more]
AT5G10150.1	3.1e-07	43.33	Domain of unknown function (DUF966)	[more]
AT3G46110.1	3.1e-07	45.00	Domain of unknown function (DUF966)	[more]

BLAST of Csa7G430190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728810\|ref\|XP_004136105.2\|	5.7e-35	100.00	PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus]	[more]
gi\|700189951\|gb\|KGN45184.1\|	5.7e-35	100.00	hypothetical protein Csa_7G430190 [Cucumis sativus]	[more]
gi\|659122595\|ref\|XP_008461227.1\|	2.2e-31	94.52	PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo]	[more]
gi\|659122597\|ref\|XP_008461228.1\|	2.2e-31	94.52	PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo]	[more]
gi\|659122593\|ref\|XP_008461226.1\|	2.2e-31	94.52	PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010369	DUF966

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G430190.1	Csa7G430190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010369	Protein of unknown function DUF966	PFAM	PF06136	DUF966	coord: 16..73 score: 1.5
None	No IPR available	PANTHER	PTHR31083	FAMILY NOT NAMED	coord: 1..73 score: 2.4
None	No IPR available	PANTHER	PTHR31083:SF5	SUBFAMILY NOT NAMED	coord: 1..73 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G430190	Lsi02G026310	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G430190	CSPI07G19760	Wild cucumber (PI 183967)	cpicuB354
Csa7G430190	Cp4.1LG12g07160	Cucurbita pepo (Zucchini)	cpecuB161

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G430190	Cucumber (Gy14) v1	cgycuB031
Csa7G430190	Cucurbita maxima (Rimu)	cmacuB388
Csa7G430190	Cucurbita maxima (Rimu)	cmacuB914
Csa7G430190	Cucurbita moschata (Rifu)	cmocuB378
Csa7G430190	Cucurbita moschata (Rifu)	cmocuB900
Csa7G430190	Melon (DHL92) v3.5.1	cumeB521
Csa7G430190	Watermelon (Charleston Gray)	cuwcgB524
Csa7G430190	Watermelon (97103) v1	cuwmB566
Csa7G430190	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G430190	Cucumber (Gy14) v2	cgybcuB323
Csa7G430190	Melon (DHL92) v3.6.1	cumedB501
Csa7G430190	Silver-seed gourd	carcuB0387
Csa7G430190	Silver-seed gourd	carcuB0484
Csa7G430190	Watermelon (97103) v2	cuwmbB570
Csa7G430190	Wax gourd	cuwgoB704
Csa7G430190	Cucumber (Chinese Long) v2	cucuB127