Cp4.1LG12g07160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g07160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDomain of unknown function (DUF966)
LocationCp4.1LG12 : 7165735 .. 7167945 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTNACAAGGTTTTTTTTTTTTTTCAATTAATTTTTTTTTTGTTCATTGTGATATTCATAACCAAGTTCGTTTAAACCGGAAATGAGGGAGAGAATGAGAAGAGATTGTATTCCTCTTCTTATTCTCGTCCAATTCTCTGTTCCATCCCCACTTTTATATATATAAAGACGTATGTTAAGACGAGTTTTTTCAAAAGATTCCAAAGCGAACACTCGAAAGTGCTTCGAATTGAATTCGGGATAGCTATTTGAAATTTTAGTGAAAGACTGGATTTGTTATCTCACGTTTGCTTTTCGTAAAAAAATACAAAATTCTATTGGGTTAATTGGATGCCACACGATAGATTTTTATCCTATACGATCCTACAAAAAAGACATTAAGATAAATAATCCCGACACGCTCCTTAGATTTATTTATGTTAAGATATATTATTTATGGAATATATTTTAGATATTATATTTTAATATTTTTCTTTATGATTTGATTTAAAGTATATTTTATTTTATTCCCAATATTTAATTAACTTATATTTTTTGTTATCGGTAGACATTAGTTAATAGTGGTATCTTATTTAAAAAATATCAATAAGAATACCCACTTCTCCAATTTTATTTCTATTTTTCATTTTTAACAATATATATTTATTTTTATTACAAATTACAATAACTCAATTATTTTATTTTTTATTTTTATTTTATAATTATATTTTAGTAACTTTTTTCTAATAAATTTAGAATTTATGAAATTGGGATCAAAACAATATTTTTTTTATGTGAAATACTAATATTCAAATTTAATTTTTTAACAATTATGTGGGTGTATGTGAATATTATATTAGATTTTTGTTTACTTTTTTTTTTTTTAATAAAATTATATTGTAAAATGAATGAGCTCCAATAAATTAAAAAATTCTGCCCCTTTCTCATTCTCTCTTTTGAATAATAAGTTAGAAAAAAAAAATGATGAAATAAACAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATGTGTATATATTTAAAAATNNNNNNNTGAGATTTTAAGCCCAACAAAGAGGCCCATATAGGTGGGCTTCTCACTTATATGCGTGGATGGGCTTCTTGGGGATTTCTAGGGCCCATCTGAGATTTTAAGCCCAACAAAGAGGCCCATATAGGTGGGCTTCTCACTTATATGCGTGGATGGGCTTCTTGGGGATTTCTAGGGCCCATTTGAGATTTTAAGCCCAACAAAGAGGCCATATAGGTGGGCTTCTCACTTATATGCGTAGATGGGCTTCTTGGGGATTTATAGGGCCCATTTGAGATTTTAAGCCCAACAAATAGGCCCATATAGGTGGGCTTCTCACTTAGATGCGTGGATGGGCTTCTTGGGGATTTCTAGGGCCCATTTGAGATTCTAAGCCCAACAAAGAGGCCCATTTAGGTGGGCTTCTCACTTATATATGCATTATTTTCTTTTAAAAAATATCATAATTTACCGTTATTATTTGTTAGGTCAATTTTGATAAGTCATCATAGCGAAAATGAATATAAACATTTTCCTTTCTTTAAAGACAATAAATTGAATAAGTACAGTTTAAGACACATGTCTCAATATTTTAAGAATAAAATGAAAATATTATTAATATGTTTTTTAGTTTAATTAGTTAATAATCAAAAGGGAGTGAATTGTCTTGTAAGGAAGGGGATAAGAGGATGTGTTAGTCTAGATTTAAATGTGATAGGGCCTAAGAGTAGGACCCTTGATTTACTCAAAAGATAAAAAAAACATTATTTAAGTATCTAATAAAAATAATTTAAATTCAACAATTCTTACAAAGGGAGCGTTAATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTTCATTTAATCTTATGCTACAAAATTAG

mRNA sequence

ATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTNACAAGGGAGCGTTAATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTTCATTTAATCTTATGCTACAAAATTAG

Coding sequence (CDS)

ATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTNACAAGGGAGCGTTAATGGAGGGTGATAATGGCGGAGATGTTAGAAGAGTTGATATTATTTACTTTCTTGGTCGGATGGGACACGTGGAGCAACCCCATCTCATCCGTGTTCATCATCTCGCCGCCGCCGGCTGCGGCGTTTATCTCCGAGGTATGAAGTGGGTTTCTTTCAAGTTTATTCCTTCATTTAATCTTATGCTACAAAATTAG

Protein sequence

MEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMKWVSFKFIPXKGALMEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMKWVSFKFIPSFNLMLQN
Homology
[Close]
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match: A0A0A0K8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.8e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 62  MEGDN----GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           ME +N    GG++R+V IIYFL RMGHVEQPHLIRVHHLA    GVYLR +K
Sbjct: 1   MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVK 52

[Close]
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match: F6GZ24_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 1  MEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK-WVS 52
          MEG  GG+VRR+ IIYFL RMG VEQPHLIRVHHL     GVYLR +K W+S
Sbjct: 1  MEG-KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHLNRN--GVYLRDVKRWLS 49

[Close]
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match: A5ARD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 1   MEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK-WVS 52
           MEG  GG+VRR+ IIYFL RMG VEQPHLIRVHHL     GVYLR +K W+S
Sbjct: 515 MEG-KGGEVRRLHIIYFLSRMGRVEQPHLIRVHHLNRN--GVYLRDVKRWLS 563

[Close]
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match: A0A067D083_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 65  DNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK-WVS 113
           +NGG+VRR+ I+YFL R+G V+ PHLIRVHHL+    GVYLR +K W++
Sbjct: 16  NNGGEVRRIHIVYFLSRLGQVDHPHLIRVHHLSRN--GVYLRDVKRWLA 62

[Close]
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match: R0GTD9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011656mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-07
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 1 

Query: 62  MEGDNGGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK-WVS 113
           ME + GG++RRV+++YFL R G+V+ PHL+RVHHL+    GV+LR +K W++
Sbjct: 1   MESNGGGEIRRVNLVYFLSRSGNVDHPHLLRVHHLSRN--GVFLRDVKRWLA 50

[Close]
BLAST of Cp4.1LG12g07160 vs. TAIR10
Match: AT1G05577.1 (AT1G05577.1 Domain of unknown function (DUF966))

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 

Query: 67  GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGM-KWVS 113
           GG+VRRV+++YFL R GHV+ PHL+RVHHL+    GV+LR + KW++
Sbjct: 7   GGEVRRVNLVYFLSRSGHVDHPHLLRVHHLSRN--GVFLRDVKKWLA 51

[Close]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match: gi|659122595|ref|XP_008461227.1| (PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 

Query: 58  KGALMEGDN---GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           K ALME +N   GG++R+V IIYFL RMGHVEQPHLIRVHHLA A  GVYLR +K
Sbjct: 8   KRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVK 62

[Close]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match: gi|659122593|ref|XP_008461226.1| (PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 1 

Query: 58  KGALMEGDN---GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           K ALME +N   GG++R+V IIYFL RMGHVEQPHLIRVHHLA A  GVYLR +K
Sbjct: 8   KRALMEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVK 62

[Close]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match: gi|659122597|ref|XP_008461228.1| (PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 62  MEGDN---GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           ME +N   GG++R+V IIYFL RMGHVEQPHLIRVHHLA A  GVYLR +K
Sbjct: 1   MEANNNNRGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGASGGVYLRDVK 51

[Close]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match: gi|700189951|gb|KGN45184.1| (hypothetical protein Csa_7G430190 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 62  MEGDN----GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           ME +N    GG++R+V IIYFL RMGHVEQPHLIRVHHLA    GVYLR +K
Sbjct: 1   MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVK 52

[Close]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match: gi|778728810|ref|XP_004136105.2| (PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1 

Query: 62  MEGDN----GGDVRRVDIIYFLGRMGHVEQPHLIRVHHLAAAGCGVYLRGMK 110
           ME +N    GG++R+V IIYFL RMGHVEQPHLIRVHHLA    GVYLR +K
Sbjct: 1   MEANNNNRAGGEIRKVHIIYFLSRMGHVEQPHLIRVHHLAGGSAGVYLRDVK 52

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g07160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g07160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8H4_CUCSA8.8e-1167.31Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430190 PE=4 SV=1[more]
F6GZ24_VITVI5.4e-0869.23Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0320g00020 PE=4 SV=... [more]
A5ARD3_VITVI5.4e-0869.23Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002153 PE=4 SV=1[more]
A0A067D083_CITSI2.7e-0759.18Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048680mg PE=4 S... [more]
R0GTD9_9BRAS7.8e-0751.92Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011656mg PE=4 SV=1[more]
BLAST of Cp4.1LG12g07160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05577.11.1e-0957.45 Domain of unknown function (DUF966)[more]
BLAST of Cp4.1LG12g07160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122595|ref|XP_008461227.1|3.0e-1270.91PREDICTED: uncharacterized protein LOC103499876 isoform X2 [Cucumis melo][more]
gi|659122593|ref|XP_008461226.1|3.0e-1270.91PREDICTED: protein UPSTREAM OF FLC isoform X1 [Cucumis melo][more]
gi|659122597|ref|XP_008461228.1|7.4e-1170.59PREDICTED: protein UPSTREAM OF FLC isoform X3 [Cucumis melo][more]
gi|700189951|gb|KGN45184.1|1.3e-1067.31hypothetical protein Csa_7G430190 [Cucumis sativus][more]
gi|778728810|ref|XP_004136105.2|1.3e-1067.31PREDICTED: uncharacterized protein LOC101207468 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07160.1Cp4.1LG12g07160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31083FAMILY NOT NAMEDcoord: 1..48
score: 1.5
NoneNo IPR availablePANTHERPTHR31083:SF5SUBFAMILY NOT NAMEDcoord: 1..48
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07160Csa7G430190Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g07160CSPI07G19760Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g07160Lsi02G026310Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g07160MELO3C023498.2Melon (DHL92) v3.6.1cpemedB150
Cp4.1LG12g07160CsaV3_7G031560Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g07160CsGy7G018050Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g07160Carg18716Silver-seed gourdcarcpeB0493
Cp4.1LG12g07160Carg13481Silver-seed gourdcarcpeB0631
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g07160Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG12g07160Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g07160Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g07160Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g07160Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g07160Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g07160Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g07160Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g07160Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g07160Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g07160Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g07160Wild cucumber (PI 183967)cpecpiB138
Cp4.1LG12g07160Cucumber (Chinese Long) v2cpecuB137
Cp4.1LG12g07160Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g07160Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g07160Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g07160Watermelon (97103) v1cpewmB131
Cp4.1LG12g07160Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07160Melon (DHL92) v3.5.1cpemeB133
Cp4.1LG12g07160Cucumber (Gy14) v2cgybcpeB308
Cp4.1LG12g07160Silver-seed gourdcarcpeB1144
Cp4.1LG12g07160Wax gourdcpewgoB0201