Lsi02G018140 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G018140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA-binding family protein
Locationchr02 : 23927549 .. 23931279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCCTTCCTCTCTTCCAATTGGGAATTTTCCTAAAAACCCTAAATCAACGATCTTTCTTCTTCGTCTCCACCGTTCTATCGATCTTCTTCGGCAACGGAAGAAAAGTTCATCCGCTAGTCATATTTTCGATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGTTTGTGTCATTGCCTTTCTCAAGTTGTTTTTCTTTCCGTCTTTCTCTGAGAAAGTTTCGAATTGGGGTTTTTAAGCACCATATTTTAATTACTATATGCCTTCCCTCTTTAGGCCTGCCAAATGGTGCCTTTGTCTCGATTTTCCTTAGATCTTGATTTTGTGTTCTCACTTTTGTTGTTATTTTTGTTTTCCCAGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAGTGAGTTTTTGTTCTTAGGGTTCGAGTTTCTGTAGCTATGTTTAATTCTGCTGAAAATAGCTGTTTTCCGTGATGGGTATTCTTTATTGTATGGATAGTTTAGGACCTTTTCTATTGTGCTTTTGTTTATACTTCAACTAGATCTGTTGAAGAGCATCGAAAATTAAATGGCTTATTGATTTGCTGAATATGTGAATTGATTAAGTGCAATGTTAGCTTAGATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTATCGAAGATACACACGTCATTAATGGGAAACAAGTGCGTGATCTTATTTATTTTGTTTTTCTGACCGACTTATGGAACACTTTATTCTATTGGATTATTAAATGGCGTTACTTTTTGGTCTCCCATGGTTTTATGATGTTAATTATGAGTATTTTTTAGAATTCTATTGGATGGTCAATATTTTTTCTTTGGTACCCCCTCTTTTTTCATGGTACAGTTGTAACATGATCTGCTGTTGCATGAATTTAAGCTTTATTTATTTTCATTTCATATTCCCTCGACTTACTTTGCTAAATGGAATTAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGGTAGGGTTATTGAGCTATCTGTTGCAGCATTTTTTTAAGAATTGGTGGTACCTATAATTGTTTCAGCCACTGTTTATTTGTTCTTCTCATATGGCTGTAGTTTCTGTGTTATGTGTTTTATTCTGTTTGTTAAAACATGTCTTGCTTGTAGATGAGTGTACACATTTCTTTTGTTGTAGTTTATATGTTTGTCTAATCTGTCTACTACATTTCTTGCTTGTAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAATGGACTGCAAGTGAGCAAAGTGTAAACAGAATTCTGTTTCCAAGGGATTTTGCACCATTCTATTACCTGGTTTTAATAATAATGGACTATTTCAACCTTTTCACTCTATGCGAATGTATCTTTTAAGCATTATGCCATTAGTTACTTCTTTTTGCTACTAATTTTAGGTGGAGGTTATTACAGGTATAGATCTTCTAAGGGAAGGGCTATCAGAATAGATAAATTGCAGAAGATTTAGGTTGACTAAGTTACTTTGTTGTAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAGAATCATTGCATAGTCCGTACCATCCATCCCCTTGCAAGCTAGAAAAGAAGTCTTTCTCCATTGCTGTCTTGCTAAGATTTGCCATAGAGTCTTCAAACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCGCTTCTCACAAATACTAGAGGTCCCAAGGAAGCTTTTGAAAGATCTGAAGAGTGTATTAGACATTTTATTGTATGGTTTTAGATACTATTATGTAGACTACTGCCAGCTAGTTTGTGCCTATATATGGTTGTCCTGATCTAGTACAATTTCAATGTAGTGTGATATGGTGTAGGCTTTAGCATATACTTTTTTTTGGTTGTGTTTATTCCTCACATTAGTTTGATATCTAGATAGATTTATTATGTCCTATAAATATGCCCTAGTCTTCTGCTCTTATTTTAGTTTGTTGATGATAGATTGCTTGTAGAAAAAAAAAACAAATTTCCCAGTTCATACTGTTTTAAAATCAGACAGAGGATTGCTTTAGGGGAAGCAGGAAATCTAGAATGAGGAACATTACTTGTATTGATATGTTGATTCTGCTAACTTAGAAGCTCCCATTGAAGATATATTTTGAATATCCCATCCCCCCCTCACACCACTCAAATTAAGCTTGTTTGATGGATTCTGCTACAATCCTGTATGTGTATAACTTGCTTTTGAGTGAAGTTGAATGCTCCTATTGACTGAACTGCTGAAGCTGATCTGGTGGGGGGTTGCCTTCCATGTGGATTTCTTGTCATGGAAGCTATACTACTCTTATATGCCTATTTCTGCAATTTTATAAATTATTTTAGGGTCTCCATTTATTATCCCAAAAATTGGGTTTCCAATGAGTGTTGGTAAAAACGATGGAAGCCAAAGTTACAGTGCAGTTGTGAAGAGTCTGTAATTTCTCCAATAATCTTTTCATACTAAGGTGTACTAATATTATTTATTATCTGACCAAATTCCCTTTTGGGCCTCTATATTCTGTCTTATCTTTTAATATTTGCTAACTGGAATGTCTACCAGGTATGGACAACGAAATATTTAATGTTTGTTGCATTAAAAGCAGAAATAATACTTCTTGTCAGCCTTTATTTCTCCATTGATGTTTTGTCATTGAATTCTGTTTCATTTTTGTAGAAATTTCTCATTTGTATTCGTTATTTTTTTTAGTAATGATTAATGTGAAAGTGAATGATAGAAACGAAATTGAAATGTACTACTGTCAAGTGTTGATATCAAATGGGGTTTCAGTAGGTTACCAGTAAATCAAATTTTTGACCTCAATAAATAAAGATTTTGGAGCATTCCATTGTTT

mRNA sequence

TATCCTTCCTCTCTTCCAATTGGGAATTTTCCTAAAAACCCTAAATCAACGATCTTTCTTCTTCGTCTCCACCGTTCTATCGATCTTCTTCGGCAACGGAAGAAAAGTTCATCCGCTAGTCATATTTTCGATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAGAATCATTGCATAGTCCGTACCATCCATCCCCTTGCAAGCTAGAAAAGAAGTCTTTCTCCATTGCTGTCTTGCTAAGATTTGCCATAGAGTCTTCAAACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCGCTTCTCACAAATACTAGAGGTCCCAAGGAAGCTTTTGAAAGATCTGAAGAGTGTATTAGACATTTTATTGTATGGTTTTAGATACTATTATGTAGACTACTGCCAGCTAGTTTGTGCCTATATATGGTTGTCCTGATCTAGTACAATTTCAATGTAGTGTGATATGGTGTAGGCTTTAGCATATACTTTTTTTTGGTTGTGTTTATTCCTCACATTAGTTTGATATCTAGATAGATTTATTATGTCCTATAAATATGCCCTAGTCTTCTGCTCTTATTTTAGTTTGTTGATGATAGATTGCTTGTAGAAAAAAAAAACAAATTTCCCAGTTCATACTGTTTTAAAATCAGACAGAGGATTGCTTTAGGGGAAGCAGGAAATCTAGAATGAGGAACATTACTTGTATTGATATGTTGATTCTGCTAACTTAGAAGCTCCCATTGAAGATATATTTTGAATATCCCATCCCCCCCTCACACCACTCAAATTAAGCTTGTTTGATGGATTCTGCTACAATCCTGTATGTGTATAACTTGCTTTTGAGTGAAGTTGAATGCTCCTATTGACTGAACTGCTGAAGCTGATCTGGTGGGGGGTTGCCTTCCATGTGGATTTCTTGTCATGGAAGCTATACTACTCTTATATGCCTATTTCTGCAATTTTATAAATTATTTTAGGGTCTCCATTTATTATCCCAAAAATTGGGTTTCCAATGAGTGTTGGTAAAAACGATGGAAGCCAAAGTTACAGTGCAGTTGTGAAGAGTCTGTAATTTCTCCAATAATCTTTTCATACTAAGGTGTACTAATATTATTTATTATCTGACCAAATTCCCTTTTGGGCCTCTATATTCTGTCTTATCTTTTAATATTTGCTAACTGGAATGTCTACCAGGTATGGACAACGAAATATTTAATGTTTGTTGCATTAAAAGCAGAAATAATACTTCTTGTCAGCCTTTATTTCTCCATTGATGTTTTGTCATTGAATTCTGTTTCATTTTTGTAGAAATTTCTCATTTGTATTCGTTATTTTTTTTAGTAATGATTAATGTGAAAGTGAATGATAGAAACGAAATTGAAATGTACTACTGTCAAGTGTTGATATCAAATGGGGTTTCAGTAGGTTACCAGTAAATCAAATTTTTGACCTCAATAAATAAAGATTTTGGAGCATTCCATTGTTT

Coding sequence (CDS)

ATGGCATCCAAATCCAAGAGCGAAAATCCTCACACCGGTGATGGCGCTAGCCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAATCCGAATGTAACTGACTTCCCTTGCATTTTGTTTTTGGATAAACAAGCTCAATTCAACAAGCATTTTGGGAAATATGGAGAGATAACAGACTCAGTGATCATGAAAGATCGGTATACAGGACAACCTAGAGGATTTGGGTTTATCACTTATGCTGATCCTTCTGTTGTCGACAAGGTTGAAATTAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTCGTTGGTGGAATTCCATCCACCGTTACTGAAGATGAGTTTAAACATTTCTTTTCCAAGTATGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGGTTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCCAAGAAATCCTCAAACCCACCACCTGCTCCTGCGTATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGCCCCTTTAGGAATCCAGGTGGTATTGGTGGTAGGATTGGTAGTGGCTATGGTTATGGTAGTAGTGGTGATTTTGGTGGTGGTTATGGAGGATTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGACTCATCCCTTGGTTATTCTAGTCGATTTGGACCTTACAGTGGTGGGTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGACGAGGGGTTGATGGCTATGGGAGCTATGGAAGTTCAGGTTATGGTGGAGGTTACGACTCTGGTCCTGGTGCTAGTTATGGTGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCTTATGCAAGGTAG

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Homology
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BLAST of Lsi02G018140 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-35
Identity = 132/379 (34.83%), Postives = 191/379 (50.40%), Query Frame = 1 

Query: 19  GKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGF 78
           GK+F+GG++ +T                 + +  +HF  YGE++ +++M+D+ TG+PRGF
Sbjct: 6   GKLFVGGISWETD----------------EDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 65

Query: 79  GFITYADPSVVDKV------------EIKRTIPKGQGQSKDF----------------KT 138
           GF+ ++DPSV+D+V            ++KR + + + Q                    KT
Sbjct: 66  GFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT 125

Query: 139 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 198
           KKIFVGG+P T+T++EF+ +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L 
Sbjct: 126 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 185

Query: 199 KGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGP 258
           K    D+SG QVE+K+A PK ++     P  G  S     + G+ GYGG+   +D     
Sbjct: 186 K-TFHDLSGKQVEVKRALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS 245

Query: 259 GPFRNPGGIGGRI--------GSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRF 318
             F     +G  +        G+GYG GS+G   G YGG+ G S GGY   ++ GY +  
Sbjct: 246 NRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTG-SAGGYGAGATAGYGATN 305

Query: 319 GPYSGGFGGGYGTSGLGGYGRGV---DGYGSYGSSGYGG-GYDSGPGAS-YGGAGGL--- 344
            P     G GYG+S       GV   + + +  SSGYG  GY SG   S YG  G     
Sbjct: 306 IP-----GAGYGSS------TGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPT 350

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BLAST of Lsi02G018140 vs. Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.9e-28
Identity = 90/256 (35.16%), Postives = 131/256 (51.17%), Query Frame = 1 

Query: 3   SKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEIT 62
           +++K E           K+FIGGL  DTT                +    ++FGKYG +T
Sbjct: 143 TQTKEERSKADLSKESCKMFIGGLNWDTT----------------EDNLREYFGKYGTVT 202

Query: 63  DSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDFKT 122
           D  IMKD  TG+ RGFGF+++  PS VD+V            + KR IP+ +      KT
Sbjct: 203 DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQD----KT 262

Query: 123 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 182
            KIFVGGI   V   EF+ FFS++G +++ Q++ D +T +SRGFGF+ ++  + VD +  
Sbjct: 263 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV-C 322

Query: 183 KGNMIDMSGTQVEIKKAEPK----KSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDA 237
           +   ID    ++EIK+AEP+    KSSN       G N+   + N   GG  G+ GDF+ 
Sbjct: 323 QNKFIDFKDRKIEIKRAEPRHMQQKSSN------NGGNNGGNNMNRR-GGNFGNQGDFNQ 370

[Close]
BLAST of Lsi02G018140 vs. Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.5e-27
Identity = 138/367 (37.60%), Postives = 180/367 (49.05%), Query Frame = 1 

Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIM 67
           EN H G+     K+FIGGL   TT                     +HF ++GEI D V+M
Sbjct: 7   ENDH-GEPEHVRKLFIGGLDYRTT----------------DESLKQHFEQWGEIVDVVVM 66

Query: 68  KDRYTGQPRGFGFITYADPSVVDK-------------VEIKRTIPKGQ-GQSKDFKT-KK 127
           KD  T + RGFGFITY+   +VD              VE KR +P+ + G+ +   T KK
Sbjct: 67  KDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKK 126

Query: 128 IFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI-LSK 187
           +FVGGI   + E++ + +F +YG VV   I+ D ET + RGF F+ F++ + VD+I LS+
Sbjct: 127 LFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSR 186

Query: 188 GNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPG 247
            + I   G  +++KKA PK  +        G   R        GG+GG  GD+    G G
Sbjct: 187 NHQI--RGKHIDVKKALPKGDA----PGGRGGGGRGGVGGGAGGGWGGGRGDWGGSAGGG 246

Query: 248 ---------PF--------RNPGGIGGRIGSGYGYGSSGDFGGG--YGGFGGNSLGGYRG 307
                    P+           GG GG +G G  +G  G  GGG  YGG GG S GG+  
Sbjct: 247 GGGGWGGADPWENGRGGGGDRWGGGGGGMGGGDRWGGGGGMGGGDRYGGGGGRS-GGWSN 306

Query: 308 DSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAG 340
           D   GY+S  GP S GFGGGY  S  GG  RG  GYG   S+ Y    D G   S GG G
Sbjct: 307 D---GYNS--GPQSDGFGGGYKQSYGGGAVRGSSGYGGSRSAPYS---DRG---SRGGGG 338

[Close]
BLAST of Lsi02G018140 vs. Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-26
Identity = 129/360 (35.83%), Postives = 174/360 (48.33%), Query Frame = 1 

Query: 5   SKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDS 64
           SKSE+P   +     K+FIGGL+ +TT                      HF ++G +TD 
Sbjct: 2   SKSESPKEPEQLR--KLFIGGLSFETT----------------DESLRSHFEQWGTLTDC 61

Query: 65  VIMKDRYTGQPRGFGFITYADPSVVDK-------------VEIKRTIPKGQGQ--SKDFK 124
           V+M+D  T + RGFGF+TYA    VD              VE KR + +   Q       
Sbjct: 62  VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLT 121

Query: 125 TKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEIL 184
            KKIFVGGI     E   + +F +YGK+   +I+ D  + + RGF F+ F++ + VD+I+
Sbjct: 122 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 181

Query: 185 SKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGF-GGYGGSYGDFDAGF 244
            +     ++G   E++KA  K+        +  S+ R RS +  F GG GG +G  D   
Sbjct: 182 IQ-KYHTVNGHNCEVRKALSKQE-----MASASSSQRGRSGSGNFGGGRGGGFGGNDNFG 241

Query: 245 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGP-YSG 304
             G F   GG GG  G G GYG SGD   GY GFG +  GGY G          GP YSG
Sbjct: 242 RGGNFSGRGGFGGSRGGG-GYGGSGD---GYNGFGND--GGYGGG---------GPGYSG 301

Query: 305 GFGG-GYGTSGLGGYGRGVDGYGSYGS--SGYGGGYDSGPGASYGGAGGLYGRGGYSGSS 345
           G  G G G  G G  G G  G GSY S  +G GGG+  G G+++GG G     G Y+  S
Sbjct: 302 GSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQS 322

[Close]
BLAST of Lsi02G018140 vs. Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-26
Identity = 68/201 (33.83%), Postives = 111/201 (55.22%), Query Frame = 1 

Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIM 67
           ++PH      P K+FIGGL+  TT                Q    ++FG++GE+ + ++M
Sbjct: 14  DSPH-----DPCKMFIGGLSWQTT----------------QEGLREYFGQFGEVKECLVM 73

Query: 68  KDRYTGQPRGFGFITYADPSVVDKV-------------EIKRTIPKGQGQSKDFKTKKIF 127
           +D  T + RGFGF+T+ D + VDKV             + K   P+        +TKKIF
Sbjct: 74  RDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIF 133

Query: 128 VGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNM 187
           VGG+    T ++ KH+F ++GKV +  ++ D  TNR RGFGF+ FE E++V+++  + + 
Sbjct: 134 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIHF 192

Query: 188 IDMSGTQVEIKKAEPKKSSNP 196
            +++   VE KKA+PK+  +P
Sbjct: 194 HEINNKMVECKKAQPKEVMSP 192

[Close]
BLAST of Lsi02G018140 vs. TrEMBL
Match: A0A0A0K3W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 5.1e-173
Identity = 329/363 (90.63%), Postives = 331/363 (91.18%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYT----------------QFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV            EIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]
BLAST of Lsi02G018140 vs. TrEMBL
Match: A5APB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 8.2e-155
Identity = 296/364 (81.32%), Postives = 318/364 (87.36%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY                A FNKHFGKYG+
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTY----------------ATFNKHFGKYGD 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVD+V            EIKRTIPKG GQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGG+PSTVTEDEFK+FFSKYGKVVEHQIIRDHETNRSRGFGFI+F+ EEVVDE+
Sbjct: 121 KTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEM 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           +SKGNMIDM+GTQVEIKKAEPKK+SNPPPAPAYGSNSRARSF+DGFGG+G SYG FD+GF
Sbjct: 181 ISKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSG-DFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R PGG+GGR+G   GYGSSG +FGGGYGGFG +SLGGYRG+SSLGYSSRFGPY G
Sbjct: 241 GPGPYRTPGGVGGRLGGYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GF GGYG SGLGGYGRG +GYG+YG SGY GGYDSGPGASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFSGGYGGSGLGGYGRGGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 348

[Close]
BLAST of Lsi02G018140 vs. TrEMBL
Match: A0A067KWH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 9.1e-154
Identity = 296/364 (81.32%), Postives = 317/364 (87.09%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSKSENPH+GDGASPGKIFIGGLAKDTTY                A FNKHFGKYGE
Sbjct: 1   MGSKSKSENPHSGDGASPGKIFIGGLAKDTTY----------------ATFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVD+V            EIKRTIPKG GQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDQVIEDTHIINGKQVEIKRTIPKGSGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPS+VTEDEFK+FFSKYGKVVEHQIIRDHETNRSRGFGFI+F+ EEVVDE+
Sbjct: 121 KTKKIFVGGIPSSVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEM 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDM+GTQVEIKKAEPKK+SNPPPAPAYGSNSR+RS+NDGFGG+GGSYG FD GF
Sbjct: 181 LSKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRSRSYNDGFGGFGGSYGGFDGGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSS-GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
            PGP+RNPGG+GGR+G GYGYGSS GDFGG YG FGG+SLGGYRG+S+LGYS RFGPY G
Sbjct: 241 APGPYRNPGGLGGRLG-GYGYGSSGGDFGGSYGSFGGSSLGGYRGESALGYSGRFGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GFGG YG SGLG YGRG +GYGSYG +GYGG Y+SGPGASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFGGSYGGSGLGSYGRGGEGYGSYGGAGYGGSYESGPGASYGGAGGLYGRGGYSGSSRYH 347

[Close]
BLAST of Lsi02G018140 vs. TrEMBL
Match: A0A067EVW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 5.5e-151
Identity = 288/364 (79.12%), Postives = 309/364 (84.89%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSKS+NPHTGDGASPGKIFIGGL KDTTY                A FNKHFGKYG+
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTY----------------ATFNKHFGKYGD 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV            EIKRTIPKG GQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPS+V+EDE K+FFSKYGKV+EHQIIRDHETNRSRGFGF++F+ EEVVDE+
Sbjct: 121 KTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDM+GTQVEIKKAEPKKSSNPPP P+Y SNSR RSFNDGFGG+G SYG FD GF
Sbjct: 181 LSKGNMIDMAGTQVEIKKAEPKKSSNPPPPPSYASNSRGRSFNDGFGGFGSSYGGFDGGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSS-GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R P G+GGR+G GYGYGSS G++GGGYGGFGG+SLGGYRG+ SLGYS RFGPY G
Sbjct: 241 GPGPYRTPAGLGGRLGGGYGYGSSGGEYGGGYGGFGGSSLGGYRGEPSLGYSGRFGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GFG  YG SGLGGYGRG +GYGSYG SGYGGGYDSGPG SYG  GGLYGRGGYSGSSRYH
Sbjct: 301 GFGSSYGGSGLGGYGRGGEGYGSYGGSGYGGGYDSGPGTSYGAGGGLYGRGGYSGSSRYH 348

[Close]
BLAST of Lsi02G018140 vs. TrEMBL
Match: B9S9X4_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM_0523280 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 9.4e-151
Identity = 289/364 (79.40%), Postives = 311/364 (85.44%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKS+NPH+GDGASPGKIFIGGLAKDTTY                A FNKHFG+YGE
Sbjct: 1   MASKSKSDNPHSGDGASPGKIFIGGLAKDTTY----------------ATFNKHFGRYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV            EIKRTIPKG GQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVIHGKQVEIKRTIPKGSGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPS+VTEDEFK FFSKYG+VVEHQIIRDHETNRSRGFGFI+F+ EE VDE+
Sbjct: 121 KTKKIFVGGIPSSVTEDEFKGFFSKYGQVVEHQIIRDHETNRSRGFGFIIFDSEETVDEM 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LS GNMIDM+GTQVEIKKAEPKK+SNPPPAP+YGSNSR RS+ND +GG+GGSYG FD GF
Sbjct: 181 LSNGNMIDMAGTQVEIKKAEPKKASNPPPAPSYGSNSRGRSYNDSYGGFGGSYGGFDGGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGS-SGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R PG +GGR+ S YGYGS  GDFGG YG FGG+SLGGYRG+SSLGYS RFGPY G
Sbjct: 241 GPGPYRTPGSLGGRLSSAYGYGSGGGDFGGSYGSFGGSSLGGYRGESSLGYSGRFGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GFGGGYG SGLGGYG G +GYGSYG +GYGGGY+SG GASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFGGGYGGSGLGGYGSGGEGYGSYGGTGYGGGYESGAGASYGGAGGLYGRGGYSGSSRYH 348

[Close]
BLAST of Lsi02G018140 vs. TAIR10
Match: AT3G13224.2 (AT3G13224.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-115
Identity = 250/376 (66.49%), Postives = 275/376 (73.14%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT                   FNKHFGKYGE
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTT----------------NTVFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQG--QSK 120
           ITDSVIM+DR+TGQPRGFGFIT+ADPSVVDKV            EIKRTIPKG G  QSK
Sbjct: 61  ITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSK 120

Query: 121 DFKTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVD 180
           D KTKKIFVGGIPSTVTEDE K FF+KYG VVEHQ+IRDHETNRSRGFGF++F+ EEVVD
Sbjct: 121 DIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVD 180

Query: 181 EILSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDA 240
           E+LSKGNMIDM+ TQVEIKKAEPKKS N  P P+YGS+ R RS ND +  YGG YG FD 
Sbjct: 181 ELLSKGNMIDMADTQVEIKKAEPKKSLNRSP-PSYGSHPRGRSSNDSYASYGGPYGGFDG 240

Query: 241 GFG--PGPFRNPGGIGGRIGSGYGYGSSG---DFGGGYGGFGGNSLGGYRGDSSLGYSSR 300
           G+G  PGP R+ GG   R   GYGYG      +FGGGY  +GG SLGGYR +  LGYSSR
Sbjct: 241 GYGHPPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSR 300

Query: 301 FGPYSGGFGG-GYGTSGLG---GYGR-GVDGYGSYGSSGYGGGYDS-GPGASYGGAGGLY 352
           FGPY  GFGG GYG  G G   GY R G +GYG YG  GYGG Y+S GPG SY GAGG Y
Sbjct: 301 FGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPY 358

[Close]
BLAST of Lsi02G018140 vs. TAIR10
Match: AT5G40490.1 (AT5G40490.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 286.6 bits (732), Expect = 2.1e-77
Identity = 199/364 (54.67%), Postives = 238/364 (65.38%), Query Frame = 1 

Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMK 69
           PH+G G  S GKIF+GGLA++TT                 A+F KHFGKYGEITDSVIMK
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETT----------------SAEFLKHFGKYGEITDSVIMK 91

Query: 70  DRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDFKTKKIFVG 129
           DR TGQPRGFGF+TYAD SVVDKV            EIKRTIP+G   S DFKTKKIFVG
Sbjct: 92  DRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVG 151

Query: 130 GIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMID 189
           GIPS+V +DEFK FF ++G++ EHQI+RDH T RSRGFGF+ +E E++VD +L+KGN I+
Sbjct: 152 GIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIE 211

Query: 190 MSGTQVEIKKAEPKK-SSNPPPAPAYGSNSRARSFNDGFG-GYGGSYGDFDAGFGPGPFR 249
           +SGTQVEIKKAEPKK +S   P+  +G +SR+ +F  G+G GYGG +G    G G GP++
Sbjct: 212 LSGTQVEIKKAEPKKPNSVTTPSKRFG-DSRS-NFGGGYGDGYGGGHGGGYGGPG-GPYK 271

Query: 250 NPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFG-GGY 309
           + GG GG    GYG G  G+FGG  GG  G  +G YRG+ +LGYS R+G   GG+  GGY
Sbjct: 272 SGGGYGGGRSGGYG-GYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGY 331

Query: 310 GTSGLGGYGRGV-DGY-GSYGSSG---------YGGGYDSGPGASYGGAGGLYGRGGYSG 347
              G GGYG G  D Y GSYG  G         YGGGY S     YGG  G  G GGY G
Sbjct: 332 SMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRG 375

[Close]
BLAST of Lsi02G018140 vs. TAIR10
Match: AT1G17640.1 (AT1G17640.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-42
Identity = 136/364 (37.36%), Postives = 186/364 (51.10%), Query Frame = 1 

Query: 16  ASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQP 75
           +SPGK+F+GG++ +TT                   F  +FGK+GE+ DSVIM DR TG P
Sbjct: 63  SSPGKLFVGGVSWETTAET----------------FANYFGKFGEVVDSVIMTDRITGNP 122

Query: 76  RGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKD---FKTKKIFVGGIPS 135
           RGFGF+T+AD +V +KV            ++KRT+P+G   +      KT+KIFVGG+P 
Sbjct: 123 RGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPP 182

Query: 136 TVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT 195
            + EDE K++F  YG ++EHQI+ DH T RSRGFGF+ F+ E+ VD + S G + ++   
Sbjct: 183 LLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDK 242

Query: 196 QVEIKKAEPKKSSNPPPAPAYGSNSR-------------ARSFNDGFGGYGGSYGDFDAG 255
           QVEIK+AEPK++       +YG++ +               S   G+GGYGG YG     
Sbjct: 243 QVEIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYGG-YG----A 302

Query: 256 FGPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 315
           +      NP G        YGYG    +G GYGG   N          +GY +  G YS 
Sbjct: 303 YAGNSMVNPAGF-------YGYGGGYGYGYGYGGQMFN----------MGYGA--GGYS- 362

Query: 316 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
             G GYG +    YG         G   +G G +   G+S G   G  G    SG  RYH
Sbjct: 363 HMGSGYGVAAAAAYG---------GGKSHGNGNN---GSSSGKGNGTNG----SGPDRYH 369

[Close]
BLAST of Lsi02G018140 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.1 bits (375), Expect = 5.2e-36
Identity = 132/379 (34.83%), Postives = 191/379 (50.40%), Query Frame = 1 

Query: 19  GKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGF 78
           GK+F+GG++ +T                 + +  +HF  YGE++ +++M+D+ TG+PRGF
Sbjct: 6   GKLFVGGISWETD----------------EDKLREHFTNYGEVSQAIVMRDKLTGRPRGF 65

Query: 79  GFITYADPSVVDKV------------EIKRTIPKGQGQSKDF----------------KT 138
           GF+ ++DPSV+D+V            ++KR + + + Q                    KT
Sbjct: 66  GFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKT 125

Query: 139 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 198
           KKIFVGG+P T+T++EF+ +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L 
Sbjct: 126 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 185

Query: 199 KGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGP 258
           K    D+SG QVE+K+A PK ++     P  G  S     + G+ GYGG+   +D     
Sbjct: 186 K-TFHDLSGKQVEVKRALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDS 245

Query: 259 GPFRNPGGIGGRI--------GSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRF 318
             F     +G  +        G+GYG GS+G   G YGG+ G S GGY   ++ GY +  
Sbjct: 246 NRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGAGYGAYGGYTG-SAGGYGAGATAGYGATN 305

Query: 319 GPYSGGFGGGYGTSGLGGYGRGV---DGYGSYGSSGYGG-GYDSGPGAS-YGGAGGL--- 344
            P     G GYG+S       GV   + + +  SSGYG  GY SG   S YG  G     
Sbjct: 306 IP-----GAGYGSS------TGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPT 350

[Close]
BLAST of Lsi02G018140 vs. TAIR10
Match: AT2G33410.1 (AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-29
Identity = 131/374 (35.03%), Postives = 182/374 (48.66%), Query Frame = 1 

Query: 19  GKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGEITDSVIMKDRYTGQPRGF 78
           GK+FIGG++ DT  N                   ++F  +GE+    +M+++ TG+PRGF
Sbjct: 6   GKLFIGGISWDTDEN----------------LLREYFSNFGEVLQVTVMREKATGRPRGF 65

Query: 79  GFITYADPSVVDKV------------EIKRTIPKGQ----GQSKDF------------KT 138
           GF+ ++DP+V+D+V            ++KR + + +    G+S  F            +T
Sbjct: 66  GFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRT 125

Query: 139 KKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILS 198
           KKIFVGG+P  +T DEF+ +F  YG V +  I+ D  T R RGFGF+ F+ E+ VD +L 
Sbjct: 126 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 185

Query: 199 KGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGS--YGDFDAGF 258
           K    D++G QVE+K+A P K +NP  A   G  S       G+GG GGS   G  D+  
Sbjct: 186 K-TFHDLNGKQVEVKRALP-KDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNR 245

Query: 259 GPGPFRNPGGI----GGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGP 318
              P     G     G   G+GYGYGS+G   GG+GG+G  +   Y   S  G     GP
Sbjct: 246 YMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGP 305

Query: 319 YS-------GGFGG-GYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYG 344
            S        G+G  GYG +   G G G  G    G +G   GY S  G  YGG    YG
Sbjct: 306 RSSWGAQAPSGYGNVGYGNAAPWG-GSGGPGSAVMGQAGASAGYGS-QGYGYGGNDSSYG 359

[Close]
BLAST of Lsi02G018140 vs. NCBI nr
Match: gi|659126124|ref|XP_008463022.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 616.3 bits (1588), Expect = 3.3e-173
Identity = 330/363 (90.91%), Postives = 331/363 (91.18%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYT----------------QFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV            EIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]
BLAST of Lsi02G018140 vs. NCBI nr
Match: gi|449463368|ref|XP_004149406.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus])

HSP 1 Score: 615.1 bits (1585), Expect = 7.3e-173
Identity = 329/363 (90.63%), Postives = 331/363 (91.18%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTY                 QFNKHFG YGE
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYT----------------QFNKHFGNYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV            EIKRTIPKGQGQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPSTVTEDEFKHFFSKYGK+VEHQIIRDHETNRSRGFGFIVFEEEEVVDEI
Sbjct: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDMSGTQVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGF
Sbjct: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300
           GPGPFRNPGGIGGRIGSGYGYGS GDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG
Sbjct: 241 GPGPFRNPGGIGGRIGSGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGG 300

Query: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 352
           FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP
Sbjct: 301 FGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHP 347

[Close]
BLAST of Lsi02G018140 vs. NCBI nr
Match: gi|225461983|ref|XP_002271592.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera])

HSP 1 Score: 554.7 bits (1428), Expect = 1.2e-154
Identity = 296/364 (81.32%), Postives = 318/364 (87.36%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY                A FNKHFGKYG+
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTY----------------ATFNKHFGKYGD 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           ITDSVIMKDRYTGQPRGFGFITYADPSVVD+V            EIKRTIPKG GQSKDF
Sbjct: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGG+PSTVTEDEFK+FFSKYGKVVEHQIIRDHETNRSRGFGFI+F+ EEVVDE+
Sbjct: 121 KTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEM 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           +SKGNMIDM+GTQVEIKKAEPKK+SNPPPAPAYGSNSRARSF+DGFGG+G SYG FD+GF
Sbjct: 181 ISKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGF 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGSSG-DFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R PGG+GGR+G   GYGSSG +FGGGYGGFG +SLGGYRG+SSLGYSSRFGPY G
Sbjct: 241 GPGPYRTPGGVGGRLGGYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GF GGYG SGLGGYGRG +GYG+YG SGY GGYDSGPGASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFSGGYGGSGLGGYGRGGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 348

[Close]
BLAST of Lsi02G018140 vs. NCBI nr
Match: gi|1009111463|ref|XP_015901084.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 553.1 bits (1424), Expect = 3.4e-154
Identity = 294/364 (80.77%), Postives = 315/364 (86.54%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y                A FNKHFGKYGE
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNY----------------ATFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           I DSVIMKDR+TGQPRGFGFITYADPSVVDKV            EIKRTIPKGQGQSKDF
Sbjct: 61  IVDSVIMKDRFTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPS+ TEDEFK FF+KYGKVVEHQIIRDHETNRSRGFGFI+F+ EEVVDE+
Sbjct: 121 KTKKIFVGGIPSSCTEDEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEL 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDM+GTQVEIKKAEPKK+SNPPPAPAYGSNSRARSFNDGFGG+GGSYG FD G+
Sbjct: 181 LSKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGY 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGS-SGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R P G+G R+G GYGYGS SG+FGGGYG FG +SLGGYRG+SSLGY+SR+GPY G
Sbjct: 241 GPGPYRTPAGLGSRLGGGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GFGGGYG S LGGYGRG +GYG YGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFGGGYGASSLGGYGRGGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 348

[Close]
BLAST of Lsi02G018140 vs. NCBI nr
Match: gi|1009138621|ref|XP_015886683.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 552.4 bits (1422), Expect = 5.8e-154
Identity = 294/364 (80.77%), Postives = 315/364 (86.54%), Query Frame = 1 

Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYNPNVTDFPCILFLDKQAQFNKHFGKYGE 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y                A FNKHFGKYGE
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNY----------------ATFNKHFGKYGE 60

Query: 61  ITDSVIMKDRYTGQPRGFGFITYADPSVVDKV------------EIKRTIPKGQGQSKDF 120
           I DSVIMKDR+TGQPRGFGFITYADPSVVDKV            EIKRTIPKGQGQSKDF
Sbjct: 61  IVDSVIMKDRFTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDF 120

Query: 121 KTKKIFVGGIPSTVTEDEFKHFFSKYGKVVEHQIIRDHETNRSRGFGFIVFEEEEVVDEI 180
           KTKKIFVGGIPS+ TEDEFK FF+KYGKVVEHQIIRDHETNRSRGFGFI+F+ EEVVDE+
Sbjct: 121 KTKKIFVGGIPSSCTEDEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEL 180

Query: 181 LSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGF 240
           LSKGNMIDM+GTQVEIKKAEPKK+SNPPPAPAYGSNSRARSFNDGFGG+GGSYG FD G+
Sbjct: 181 LSKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGY 240

Query: 241 GPGPFRNPGGIGGRIGSGYGYGS-SGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSG 300
           GPGP+R P G+G R+G GYGYGS SG+FGGGYG FG +SLGGYRG+SSLGY+SR+GPY G
Sbjct: 241 GPGPYRTPTGLGSRLGGGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGG 300

Query: 301 GFGGGYGTSGLGGYGRGVDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 352
           GFGGGYG S LGGYGRG +GYG YGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH
Sbjct: 301 GFGGGYGASSLGGYGRGGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYH 348

The following BLAST results are available for this feature:
BLAST of Lsi02G018140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNP1_ARATH9.3e-3534.83Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S... [more]
HRP1_YEAST2.9e-2835.16Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain... [more]
ROA1_SCHAM5.5e-2737.60Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americ... [more]
ROA1_HUMAN1.6e-2635.83Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5[more]
MSI1H_RAT2.1e-2633.83RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1[more]
BLAST of Lsi02G018140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3W8_CUCSA5.1e-17390.63Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1[more]
A5APB9_VITVI8.2e-15581.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=... [more]
A0A067KWH0_JATCU9.1e-15481.32Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1[more]
A0A067EVW0_CITSI5.5e-15179.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1[more]
B9S9X4_RICCO9.4e-15179.40Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM... [more]
BLAST of Lsi02G018140 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13224.21.1e-11566.49 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G40490.12.1e-7754.67 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G17640.13.8e-4237.36 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G14300.15.2e-3634.83 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G33410.12.8e-2935.03 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Lsi02G018140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126124|ref|XP_008463022.1|3.3e-17390.91PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo][more]
gi|449463368|ref|XP_004149406.1|7.3e-17390.63PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus][more]
gi|225461983|ref|XP_002271592.1|1.2e-15481.32PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera][more]
gi|1009111463|ref|XP_015901084.1|3.4e-15480.77PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba][more]
gi|1009138621|ref|XP_015886683.1|5.8e-15480.77PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G018140.1Lsi02G018140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 49..89
score: 8.5E-8coord: 113..179
score: 1.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 112..185
score: 3.9E-20coord: 20..109
score: 4.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 111..189
score: 18.462coord: 19..115
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 98..195
score: 3.5E-25coord: 5..91
score: 5.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 13..91
score: 4.07E-13coord: 103..219
score: 3.09
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 51..233
score: 7.2E-130coord: 1..34
score: 7.2E-130coord: 264..340
score: 7.2E
NoneNo IPR availablePANTHERPTHR24012:SF478GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJH23coord: 51..233
score: 7.2E-130coord: 264..340
score: 7.2E-130coord: 1..34
score: 7.2E