Cp4.1LG06g08260 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g08260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding family protein
Location	Cp4.1LG06 : 5336291 .. 5341775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGACAGTTTAAAGTCGTTATCCTCTTCCAATTTGGAAGCATCATAAAAACCCTAAATCGACGATCCTTTTTCTTCGTCTCCACCGTGTTATCGATCTTCTTCGACAGCGGAAGAAAAGTTCAGCCGGTGGCCAAATTTCTGATGGCGTCCAAATCGAAGAGCGAAAACCCTCACACGGGTGATGGCGCTAGTCCCGGGTTTGTGTCTGTGCCTTTCTCGATTGATTTACGTTCGGTGTTTCTCTGAGAAAGTTTCGAACTGGGGCTTTTAAGCACCAGATTTTAATTACTATATGCCTTCCCCTGATTACGCCTGCTAGTCGGTTCCTTTGTCTCAATTTATTTAGATCTTGATTTTGTGTTCTCATTTTTTTGTTGTTGCTATTTTTGTTTTTCCCAGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACAGTGAGTTCTTGTTTACTTTTAATTATAAATTCTTTTCGTAGGATTGGAGTTTCTGTAAGTGTGCTTAATTCTGCTGAAAATGCCTGTTTTTCTTGATGGGTGTTCTTTTTTGTATGGCGTGTGCTTTAGCAGTTGTTTATACTTCAACTATATCTGTTGAAGAGCTTATTAAATGAGTTCTTTGTTTGCTAAGTCTGTAAGTTAATTAAATGCAATGTTAGTTTAAATCCGACCGTAGCTGATGTTCTTTTCATTGTGTTTTTGTAAAAAACAGCTCAATTCAACAAGCATTTTGGGACGTATGGAGAGATAACTGACTCGGTGATCATGAAAGATCGGTATACAGGACAGCCAAGAGGTTTTGGGTTTATCACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACATGTCATCAATGGGAAACAAGTTCGTGATCCTATTTGTTTTGTTTTTCTTACTGGCTTACCAAACATTCTATTCCACTTGATTGTTAAATGGCGTTTAAATTTATTTGCTTTCCATGGTCTTATAAGATTAATTACGAGTCCTTTTCCGAACTCCATTGGTTGGTTAATATTTTTTTCTTTGCTACCCCCCACGCTCTCGTCTTTCATGGTACACTTGTAATATGATCTGTTGTTGCATAAATTTAGGATTTAATGATTTTCTATACCTATGACTTACTTTGGTATATGGAAGTAGGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGGTAGGGTACCAATATTTGTTATATTTCTATACCTGTGACTTACTTTGGTATATTTGCATGTTTTCTTTAATTGGTGGTACCAATATTTGTTTCATTCATTTTTTTCTCGTCTTCTCATATGTCTTGCTTGTTGATGAGTTTAAACATTTATTTTCCTAATTTATTCATTTTTCTCATATTGTGGTAGTTTATATGTCGTGTGTTTAATCTGGCTATTACATTTCTTGCTTGTAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATCAATGGAATGCAATTGAGCCGAGTGTAAACAGAATTCTGTTTCCCATGAATTTTACACCGCCATATTCTCCAGTTTTAATAATAAAGGACGATTTTCAACCTTTTCATTGTATACAAATGTATCTTTTAAGCATTATGCTGTTAGTCATGTCTTTTCTATACTAGTTTTAGGTGGAGGTTATTACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTTCAATTTTGGAAGATTTAGGTTGACTAAGTTACTTTCTTGTAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGGTAGAATCATTGCATAGTCAGTACCATCCATCCCTTTGCAAGCTAGTAAAGAAGTCTCACTCCATTGCTGTCTTGCTTAGATTTGCCATAGAGTCTTCAATCACAGGTTCCTATAGTTTCGTGGCCCAGTGATAAGCGGTTCTCACAAATACTAGACGTCCCAAGGAAGCTATTTAAAGACCCGAAGAGTGTATTAGACATTTTATTGTATGGTTTTTAGACACTATCATGTAGAGACTACTATGGTTGTCCCGATCTAGTACGATTTTAATTTAGCGTGCCATGGTGTAGGCTTTAGCATATACTTCTTCTTGGCTGTGTTTATTCCTCACATTAGTTCAATATCTAGATAGGTTTTTTTATGTTCTATAAATATGCTCTAGTTNTACTTTGGTATATGGAAGTAGGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGGTAGGGTACCAATATTTGTTATATTTCTATACCTGTGACTTACTTTGGTATATTTGCATGTTTTCTTTAATTGGTGGTACCAATATTTGTTTCATTCATTTTTTTCTCGTCTTCTCATATGTCTTGCTTGTTGATGAGTTTAAACATTTATTTTCCTAATTTATTCATTTTTCTCATATTGTGGTAGTTTATATGTCGTGTGTTTAATCTGGCTATTACATTTCTTGCTTGTAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATCAATGGAATGCAATTGAGCCGAGTGTAAACAGAATTCTGTTTCCCATGAATTTTACACCGCCATATTCTCCAGTTTTAATAATAAAGGACGATTTTCAACCTTTTCATTGTATACAAATGTATCTTTTAAGCATTATGCTGTTAGTCATGTCTTTTCTATACTAGTTTTAGGTGGAGGTTATTACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTTCAATTTTGGAAGATTTAGGTTGACTAAGTTACTTTCTTGTAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGGTAGAATCATTGCATAGTCAGTACCATCCATCCCTTTGCAAGCTAGTAAAGAAGTCTCACTCCATTGCTGTCTTGCTTAGATTTGCCATAGAGTCTTCAATCACAGGTTCCTATAGTTTCGTGGCCCAGTGATAAGCGGTTCTCACAAATACTAGACGTCCCAAGGAAGCTATTTAAAGACCCGAAGAGTGTATTAGACATTTTATTGTATGGTTTTTAGACACTATCATGTAGAGACTACTATGGTTGTCCCGATCTAGTACGATTTTAATTTAGCGTGCCATGGTGTAGGCTTTAGCATATACTTCTTCTTGGCTGTGTTTATTCCTCACATTAGTTCAATATCTAGATAGGTTTTTTTATGTTCTATAAATATGCTCTAGTTTCCGCTCGTACTTTAGTTTGTCGATGATAGACTGTTGGTAGGAGAAAAAAAACTCCTAGCTCTACTAGTTTAGAAGATTGTTTCGGGCAGGGAGCAGATCGCTTGTATCGATATGTCGATTCTACTAGCTTAGACGCCTCCATATAGAGGTCATATGTTGATTAGAAAGATCTTGTATTTTTTGGTGTTGAGATAAATTTATGCTTAACTGTTTTTTTCTTTTTCTTTTTTTGATGATTTTGTTACTATCCTGTGTGTGTATGATGAACAAGAAGTTATTGGAAAACTGGAAATAATTTGGTTTTGAGTGAGAGAAGTTGAATACTCCTATCGACTGAACTCTGCTGAAGAAGCTGAACTCTGGTGGTTGCCTCCCTTGTGGATTTCTGGAGTGATAGGAAGCCCCTGCGGTTGTTCGGCTGAGTACTCTCTGTCCGCGTATCTCACACTCCCGCTGATTTTGGCTTTCATCTTTCATTTGCCTTACCTTCATTTTTCTTTCGAGATATAGGTCGGCTTCGTGCATCTTGATGTTTGCCGGGGTGCTCCTAAAGGAATGTCCTTCCGGTGGGTTGTTCTCTTCTCTATCTCTTCCATAGAAAATCTCTCTTCGTAATGCAATATATTAGTCTCTTTCTCTCGGCTTCTGTCTTTGAAGCGGTGTTTACTATTAAGCCTACGCCCATTCCTTTCAAGCTTGATTCCGTCTTTAGACTCGTTATGCTGTTCGACTGAACTCGTCGGCTCTGCACTCTATTTGGTTGGAATCCGGTTCGATAACCTTCTCTCATAGATTCCCTTCACCAATCACCAAGTTATGTAATCCGTATTCTTGTATGTCTTCTGCAATTTTGTAAATTACAGTGCAGTTGAAATGTTTGTATATAATATATTGATTTGTAATTTATTAGTGACCAAATTGCTTTTTGTATATAATATATGTTGGGTTGTGACGA

mRNA sequence

TAGACAGTTTAAAGTCGTTATCCTCTTCCAATTTGGAAGCATCATAAAAACCCTAAATCGACGATCCTTTTTCTTCGTCTCCACCGTGTTATCGATCTTCTTCGACAGCGGAAGAAAAGTTCAGCCGGTGGCCAAATTTCTGATGGCGTCCAAATCGAAGAGCGAAAACCCTCACACGGGTGATGGCGCTAGTCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACACTCAATTCAACAAGCATTTTGGGACGTATGGAGAGATAACTGACTCGGTGATCATGAAAGATCGGTATACAGGACAGCCAAGAGGTTTTGGGTTTATCACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACATGTCATCAATGGGAAACAAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGAGACTACTATGGTTGTCCCGATCTAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGGTAGAATCATTGCATAGTCAGTACCATCCATCCCTTTGCAAGCTAGTAAAGAAGTCTCACTCCATTGCTGTCTTGCTTAGATTTGCCATAGAGTCTTCAATCACAGGTTCCTATAGTTTCGTGGCCCAGTGATAAGCGGTTCTCACAAATACTAGACGTCCCAAGGAAGCTATTTAAAGACCCGAAGAGTGTATTAGACATTTTATTGTATGGTTTTTAGACACTATCATGTAGAGACTACTATGGTTGTCCCGATCTAGTACGATTTTAATTTAGCGTGCCATGGTGTAGGCTTTAGCATATACTTCTTCTTGGCTGTGTTTATTCCTCACATTAGTTCAATATCTAGATAGGTTTTTTTATGTTCTATAAATATGCTCTAGTTTCCGCTCGTACTTTAGTTTGTCGATGATAGACTGTTGGTAGGAGAAAAAAAACTCCTAGCTCTACTAGTTTAGAAGATTGTTTCGGGCAGGGAGCAGATCGCTTGTATCGATATGTCGATTCTACTAGCTTAGACGCCTCCATATAGAGGTCATATGTTGATTAGAAAGATCTTGTATTTTTTGGTGTTGAGATAAATTTATGCTTAACTGTTTTTTTCTTTTTCTTTTTTTGATGATTTTGTTACTATCCTGTGTGTGTATGATGAACAAGAAGTTATTGGAAAACTGGAAATAATTTGGTTTTGAGTGAGAGAAGTTGAATACTCCTATCGACTGAACTCTGCTGAAGAAGCTGAACTCTGGTGGTTGCCTCCCTTGTGGATTTCTGGAGTGATAGGAAGCCCCTGCGGTTGTTCGGCTGAGTACTCTCTGTCCGCGTATCTCACACTCCCGCTGATTTTGGCTTTCATCTTTCATTTGCCTTACCTTCATTTTTCTTTCGAGATATAGGTCGGCTTCGTGCATCTTGATGTTTGCCGGGGTGCTCCTAAAGGAATGTCCTTCCGGTGGGTTGTTCTCTTCTCTATCTCTTCCATAGAAAATCTCTCTTCGTAATGCAATATATTAGTCTCTTTCTCTCGGCTTCTGTCTTTGAAGCGGTGTTTACTATTAAGCCTACGCCCATTCCTTTCAAGCTTGATTCCGTCTTTAGACTCGTTATGCTGTTCGACTGAACTCGTCGGCTCTGCACTCTATTTGGTTGGAATCCGGTTCGATAACCTTCTCTCATAGATTCCCTTCACCAATCACCAAGTTATGTAATCCGTATTCTTGTATGTCTTCTGCAATTTTGTAAATTACAGTGCAGTTGAAATGTTTGTATATAATATATTGATTTGTAATTTATTAGTGACCAAATTGCTTTTTGTATATAATATATGTTGGGTTGTGACGA

Coding sequence (CDS)

ATGGCGTCCAAATCGAAGAGCGAAAACCCTCACACGGGTGATGGCGCTAGTCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACACTCAATTCAACAAGCATTTTGGGACGTATGGAGAGATAACTGACTCGGTGATCATGAAAGATCGGTATACAGGACAGCCAAGAGGTTTTGGGTTTATCACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACATGTCATCAATGGGAAACAAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGAGACTACTATGGTTGTCCCGATCTAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGGTAG

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYARDYYGCPDLVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR

Homology

[Close]

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.4e-40
Identity = 124/348 (35.63%), Postives = 185/348 (53.16%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF  YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTIPKGHGQLKD----------------FKTKKIFVGGIPSTVTEDE 138
           + H I+ ++V++KR + +   Q+                   KTKKIFVGG+P T+T++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 139 FNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKK 198
           F  +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L +    D+SG QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVEVKR 185

Query: 199 AEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSG 258
           A P K +NP      G  S     + G+ GYG +    D       F     +G  + S 
Sbjct: 186 ALP-KDANP----GGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPS- 245

Query: 259 YGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVD 318
             YGSSG +G GYG           G +  GY + +G Y+G   GGYG     GYG    
Sbjct: 246 --YGSSG-YGAGYG----------NGSNGAGYGA-YGGYTGS-AGGYGAGATAGYG---- 305

Query: 319 GYGSYGTSSYGGGYDSGPGASYGG-----ASGLYGRGGYSGGSRYHPY 346
                 T+  G GY S  G +        AS  YG  GY  G+ +  Y
Sbjct: 306 -----ATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGY 322

[Close]

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.3e-35
Identity = 84/219 (38.36%), Postives = 128/219 (58.45%), Query Frame = 1


Query: 3   SKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGF 62
           +++K E           K+FIGGL  DTT     ++FG YG +TD  IMKD  TG+ RGF
Sbjct: 143 TQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF 202

Query: 63  GFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDE 122
           GF+++  PS VD+V++  H+++GK ++ KR IP+     +  KT KIFVGGI   V   E
Sbjct: 203 GFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD----EQDKTGKIFVGGIGPDVRPKE 262

Query: 123 FNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKK 182
           F  FFS++G + + Q++ D +T +SRGFGF+ ++  + VD +  N   ID    ++EIK+
Sbjct: 263 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN-KFIDFKDRKIEIKR 322

Query: 183 AEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLD 222
           AEP+       +S  G N+   + N   G +G+  GD +
Sbjct: 323 AEPRHMQQ--KSSNNGGNNGGNNMNRRGGNFGNQ-GDFN 353

[Close]

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-32
Identity = 107/287 (37.28%), Postives = 140/287 (48.78%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GGL   TT      +F  YGE+ D VIMKD+ T Q RGFGF+ + DP+ V  V+ 
Sbjct: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69

Query: 79  D-THVINGKQVEIKRTIPKG-------------HGQLKD-FKTKKIFVGGIPSTVTEDEF 138
              H ++G+ ++ K   P+G              G   D  K+ KIFVGGIP    E E 
Sbjct: 70  SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETEL 129

Query: 139 NHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKA 198
             +F K+G V E  +I D E  R RGFGFI FE+E+ VD+ + N +  D+ G +VE+K+A
Sbjct: 130 REYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRA 189

Query: 199 EPKKSSNPPP----ASAYGSNSRSRSFNDGFG--------GYG------------SSYGD 257
           EP+ S N  P    AS +GS     + N   G        GYG              YG 
Sbjct: 190 EPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGP 249

[Close]

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot
Match: RBP1_ARATH (RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-32
Identity = 69/194 (35.57%), Postives = 116/194 (59.79%), Query Frame = 1


Query: 20  KIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
           K+F+GG+AK+T+     ++F  YG + ++V+ K++ TG+PRGFGF+ +A+   V K + D
Sbjct: 7   KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66

Query: 80  THVINGKQVEIKRTIPKG-------------------HGQLKDF-------KTKKIFVGG 139
           TH I GK V++++ I K                    +G L++        +TKKIFVGG
Sbjct: 67  THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGG 126

Query: 140 IPSTVTEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDM 188
           + S  TE+EF  +F ++G+  +  ++ D  TNR RGFGF+ ++ E+ V E++   N  ++
Sbjct: 127 LSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV-EVVMQSNFHEL 186

[Close]

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 9.9e-32
Identity = 88/252 (34.92%), Postives = 141/252 (55.95%), Query Frame = 1


Query: 5   SKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGF 64
           S SE P+      PGK+FIGGL+  T+      +FG YG+I+++++MKD  T + RGFGF
Sbjct: 20  SPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGF 79

Query: 65  ITYADPSVVDKVI-EDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEF 124
           +T++DP+ VDKV+ + TH ++GK+V+ K   P+        +TKKIFVGG+ +  T ++ 
Sbjct: 80  VTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDV 139

Query: 125 NHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKA 184
             +F ++G + +  ++ D +TNR RGFGF+ F+ E+VVD++    +  +++   VE KKA
Sbjct: 140 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI-HFHEINNKMVECKKA 199

Query: 185 EPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSGY 244
           +PK+   P   +   +  R            S+Y ++  G G  P   P    A   +G 
Sbjct: 200 QPKEVMLPANLAKTRAAGR------------SAYDNIMWGLGTLPEGFPAAAYAAYAAGR 253

Query: 245 GYGSSGDFGGGY 256
           GY     FG  Y
Sbjct: 260 GYSGYPSFGLPY 253

[Close]

BLAST of Cp4.1LG06g08260 vs. TrEMBL
Match: A0A0A0K3W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 635.2 bits (1637), Expect = 8.4e-179
Identity = 325/347 (93.66%), Postives = 331/347 (95.39%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF HFFSKYGK+ EHQIIRDHETNRSRGFGFIVFEEEEVVDEILS GNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKKSSNP PA AYGSNSR+R+FNDGFGGYG SYGD DAGFGPGPFR PGG+G RIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 SGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
           SGYGYGS GDFGGGYGGFGGNSLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           VDGYGSYG+S YGGGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of Cp4.1LG06g08260 vs. TrEMBL
Match: A5APB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.1e-162
Identity = 298/348 (85.63%), Postives = 320/348 (91.95%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGG+PSTVTE
Sbjct: 61  GFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF +FFSKYGKV EHQIIRDHETNRSRGFGFI+F+ EEVVDE++S GNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA AYGSNSR+RSF+DGFGG+GSSYG  D+GFGPGP+RTPGG+G R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLG 240

Query: 241 SGYGYGSSG-DFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
              GYGSSG +FGGGYGGFG +SLGGYRGESSLGYSSRFGPY GGF GGYG SGLGGYGR
Sbjct: 241 GYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYG+YG S Y GGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of Cp4.1LG06g08260 vs. TrEMBL
Match: A0A067KWH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 3.0e-160
Identity = 296/348 (85.06%), Postives = 315/348 (90.52%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSKSENPH+GDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSENPHSGDGASPGKIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTH+INGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPS+VTE
Sbjct: 61  GFGFITYADPSVVDQVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF +FFSKYGKV EHQIIRDHETNRSRGFGFI+F+ EEVVDE+LS GNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA AYGSNSRSRS+NDGFGG+G SYG  D GF PGP+R PGGLG R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRSRSYNDGFGGFGGSYGGFDGGFAPGPYRNPGGLGGRLG 240

Query: 241 SGYGYGSS-GDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
            GYGYGSS GDFGG YG FGG+SLGGYRGES+LGYS RFGPY GGFGG YG SGLG YGR
Sbjct: 241 -GYGYGSSGGDFGGSYGSFGGSSLGGYRGESALGYSGRFGPYGGGFGGSYGGSGLGSYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYGSYG + YGG Y+SGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGSYGGAGYGGSYESGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of Cp4.1LG06g08260 vs. TrEMBL
Match: A0A067EVW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 8.7e-160
Identity = 292/348 (83.91%), Postives = 311/348 (89.37%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGL KDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTH+INGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPS+V+E
Sbjct: 61  GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DE  +FFSKYGKV EHQIIRDHETNRSRGFGF++F+ EEVVDE+LS GNMIDM+GTQVEI
Sbjct: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKKSSNPPP  +Y SNSR RSFNDGFGG+GSSYG  D GFGPGP+RTP GLG R+G
Sbjct: 181 KKAEPKKSSNPPPPPSYASNSRGRSFNDGFGGFGSSYGGFDGGFGPGPYRTPAGLGGRLG 240

Query: 241 SGYGYGSS-GDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
            GYGYGSS G++GGGYGGFGG+SLGGYRGE SLGYS RFGPY GGFG  YG SGLGGYGR
Sbjct: 241 GGYGYGSSGGEYGGGYGGFGGSSLGGYRGEPSLGYSGRFGPYGGGFGSSYGGSGLGGYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYGSYG S YGGGYDSGPG SYG   GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGSYGGSGYGGGYDSGPGTSYGAGGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of Cp4.1LG06g08260 vs. TrEMBL
Match: B9S9X4_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM_0523280 PE=4 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 2.5e-159
Identity = 293/348 (84.20%), Postives = 313/348 (89.94%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           MASKSKS+NPH+GDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSDNPHSGDGASPGKIFIGGLAKDTTYATFNKHFGRYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVI+GKQVEIKRTIPKG GQ KDFKTKKIFVGGIPS+VTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVIHGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF  FFSKYG+V EHQIIRDHETNRSRGFGFI+F+ EE VDE+LSNGNMIDM+GTQVEI
Sbjct: 121 DEFKGFFSKYGQVVEHQIIRDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA +YGSNSR RS+ND +GG+G SYG  D GFGPGP+RTPG LG R+ 
Sbjct: 181 KKAEPKKASNPPPAPSYGSNSRGRSYNDSYGGFGGSYGGFDGGFGPGPYRTPGSLGGRLS 240

Query: 241 SGYGYGS-SGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           S YGYGS  GDFGG YG FGG+SLGGYRGESSLGYS RFGPY GGFGGGYG SGLGGYG 
Sbjct: 241 SAYGYGSGGGDFGGSYGSFGGSSLGGYRGESSLGYSGRFGPYGGGFGGGYGGSGLGGYGS 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYGSYG + YGGGY+SG GASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGSYGGTGYGGGYESGAGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of Cp4.1LG06g08260 vs. TAIR10
Match: AT3G13224.2 (AT3G13224.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 443.0 bits (1138), Expect = 3.1e-124
Identity = 254/360 (70.56%), Postives = 278/360 (77.22%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT T FNKHFG YGEITDSVIM+DR+TGQPR
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHG--QLKDFKTKKIFVGGIPSTV 120
           GFGFIT+ADPSVVDKVIEDTHVINGKQVEIKRTIPKG G  Q KD KTKKIFVGGIPSTV
Sbjct: 61  GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120

Query: 121 TEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQV 180
           TEDE   FF+KYG V EHQ+IRDHETNRSRGFGF++F+ EEVVDE+LS GNMIDM+ TQV
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180

Query: 181 EIKKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFG--PGPFRTPGGLG 240
           EIKKAEPKKS N  P S YGS+ R RS ND +  YG  YG  D G+G  PGP R+ GG  
Sbjct: 181 EIKKAEPKKSLNRSPPS-YGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPA 240

Query: 241 ARIGSGYGYGSSG---DFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGG-GYGTS 300
           +R   GYGYG      +FGGGY  +GG SLGGYR E  LGYSSRFGPY  GFGG GYG  
Sbjct: 241 SRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRG 300

Query: 301 GLG---GYGR-GVDGYGSYGTSSYGGGYDS-GPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G G   GY R G +GYG YG   YGG Y+S GPG SY GA G YGR GYS  SRYHPYAR
Sbjct: 301 GEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYGR-GYSSSSRYHPYAR 358

[Close]

BLAST of Cp4.1LG06g08260 vs. TAIR10
Match: AT5G40490.1 (AT5G40490.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 320.9 bits (821), Expect = 1.8e-87
Identity = 201/347 (57.93%), Postives = 240/347 (69.16%), Query Frame = 1


Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYA 69
           PH+G G  S GKIF+GGLA++TT  +F KHFG YGEITDSVIMKDR TGQPRGFGF+TYA
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91

Query: 70  DPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEFNHFFS 129
           D SVVDKVI+D H+I GKQVEIKRTIP+G     DFKTKKIFVGGIPS+V +DEF  FF 
Sbjct: 92  DSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFM 151

Query: 130 KYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKS 189
           ++G++ EHQI+RDH T RSRGFGF+ +E E++VD +L+ GN I++SGTQVEIKKAEPKK 
Sbjct: 152 QFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKP 211

Query: 190 SNPPPASAYGSNSRSRSFNDGFG-GYGSSYGDLDAGFGPGPFRTPGGLGARIGSGYGYGS 249
           ++    S    +SRS +F  G+G GYG  +G    G G GP+++ GG G     GYG G 
Sbjct: 212 NSVTTPSKRFGDSRS-NFGGGYGDGYGGGHGGGYGGPG-GPYKSGGGYGGGRSGGYG-GY 271

Query: 250 SGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFG-GGYGTSGLGGYGRGV-DGY- 309
            G+FGG  GG  G  +G YRGE +LGYS R+G   GG+  GGY   G GGYG G  D Y 
Sbjct: 272 GGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMYG 331

Query: 310 GSYG---------TSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRY 343
           GSYG         + SYGGGY S     YGG  G  G GGY GG  Y
Sbjct: 332 GSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGY 375

[Close]

BLAST of Cp4.1LG06g08260 vs. TAIR10
Match: AT1G17640.1 (AT1G17640.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 196.8 bits (499), Expect = 3.8e-50
Identity = 139/345 (40.29%), Postives = 198/345 (57.39%), Query Frame = 1


Query: 16  ASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75
           +SPGK+F+GG++ +TT   F  +FG +GE+ DSVIM DR TG PRGFGF+T+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 76  VIEDTHVINGKQVEIKRTIPKGHGQLKD------FKTKKIFVGGIPSTVTEDEFNHFFSK 135
           V+E+ HVI+ ++V++KRT+P+G    KD       KT+KIFVGG+P  + EDE  ++F  
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGD---KDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCV 182

Query: 136 YGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKSS 195
           YG + EHQI+ DH T RSRGFGF+ F+ E+ VD + S+G + ++   QVEIK+AEPK++ 
Sbjct: 183 YGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTG 242

Query: 196 NPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSG------- 255
                 +YG++ +     D + G  +    + +G+G       GG GA  G+        
Sbjct: 243 RDNSFRSYGASGKYDQ-EDSYSGKANEDYSMYSGYG-----GYGGYGAYAGNSMVNPAGF 302

Query: 256 YGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVD 315
           YGYG    +G GYGG   N          +GY +  G YS   G GYG +    YG    
Sbjct: 303 YGYGGGYGYGYGYGGQMFN----------MGYGA--GGYS-HMGSGYGVAAAAAYG---- 362

Query: 316 GYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
                G  S+G G +   G+S G  +G  G    SG  RYHPY +
Sbjct: 363 -----GGKSHGNGNN---GSSSGKGNGTNG----SGPDRYHPYQK 369

[Close]

BLAST of Cp4.1LG06g08260 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 167.5 bits (423), Expect = 2.5e-41
Identity = 124/348 (35.63%), Postives = 185/348 (53.16%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF  YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTIPKGHGQLKD----------------FKTKKIFVGGIPSTVTEDE 138
           + H I+ ++V++KR + +   Q+                   KTKKIFVGG+P T+T++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 139 FNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKK 198
           F  +F  YG V +  I+ D  TNR RGFGF+ F+ E+ VD +L +    D+SG QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVEVKR 185

Query: 199 AEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSG 258
           A P K +NP      G  S     + G+ GYG +    D       F     +G  + S 
Sbjct: 186 ALP-KDANP----GGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPS- 245

Query: 259 YGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVD 318
             YGSSG +G GYG           G +  GY + +G Y+G   GGYG     GYG    
Sbjct: 246 --YGSSG-YGAGYG----------NGSNGAGYGA-YGGYTGS-AGGYGAGATAGYG---- 305

Query: 319 GYGSYGTSSYGGGYDSGPGASYGG-----ASGLYGRGGYSGGSRYHPY 346
                 T+  G GY S  G +        AS  YG  GY  G+ +  Y
Sbjct: 306 -----ATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGY 322

[Close]

BLAST of Cp4.1LG06g08260 vs. TAIR10
Match: AT2G33410.1 (AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.5 bits (402), Expect = 6.8e-39
Identity = 130/352 (36.93%), Postives = 186/352 (52.84%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+FIGG++ DT      ++F  +GE+    +M+++ TG+PRGFGF+ ++DP+V+D+V++
Sbjct: 6   GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI------PKGHGQL----------KDFKTKKIFVGGIPSTVTEDE 138
           D H I+ + V++KR +      P G               + +TKKIFVGG+P  +T DE
Sbjct: 66  DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125

Query: 139 FNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKK 198
           F  +F  YG V++  I+ D  T R RGFGF+ F+ E+ VD +L +    D++G QVE+K+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL-HKTFHDLNGKQVEVKR 185

Query: 199 AEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSS--YGDLDAGFGPGPFRTPGGL----G 258
           A P K +NP  AS  G  S       G+GG G S   G +D+     P  T  G     G
Sbjct: 186 ALP-KDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGG 245

Query: 259 ARIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGG 318
           +  G+GYGYGS+G   GG+GG+G  +   Y   S  G     GP S    G    SG G 
Sbjct: 246 SGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGPRSS--WGAQAPSGYGN 305

Query: 319 YGRGVDGYGSYGTSSYGGGYDSGPGAS---YGGASGLYGRGGYSGGSRYHPY 346
            G        YG ++  GG   GPG++     GAS  YG  GY  G     Y
Sbjct: 306 VG--------YGNAAPWGG-SGGPGSAVMGQAGASAGYGSQGYGYGGNDSSY 344

[Close]

BLAST of Cp4.1LG06g08260 vs. NCBI nr
Match: gi|659126124|ref|XP_008463022.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 636.3 bits (1640), Expect = 5.4e-179
Identity = 326/347 (93.95%), Postives = 331/347 (95.39%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF HFFSKYGK+ EHQIIRDHETNRSRGFGFIVFEEEEVVDEILS GNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKKSSNP PA AYGSNSR+RSFNDGFGGYG SYGD DAGFGPGPFR PGG+G RIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 SGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
           SGYGYGS GDFGGGYGGFGGNSLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           VDGYGSYG+S YGGGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of Cp4.1LG06g08260 vs. NCBI nr
Match: gi|449463368|ref|XP_004149406.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus])

HSP 1 Score: 635.2 bits (1637), Expect = 1.2e-178
Identity = 325/347 (93.66%), Postives = 331/347 (95.39%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF HFFSKYGK+ EHQIIRDHETNRSRGFGFIVFEEEEVVDEILS GNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKKSSNP PA AYGSNSR+R+FNDGFGGYG SYGD DAGFGPGPFR PGG+G RIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 SGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
           SGYGYGS GDFGGGYGGFGGNSLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           VDGYGSYG+S YGGGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of Cp4.1LG06g08260 vs. NCBI nr
Match: gi|225461983|ref|XP_002271592.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera])

HSP 1 Score: 581.6 bits (1498), Expect = 1.6e-162
Identity = 298/348 (85.63%), Postives = 320/348 (91.95%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGG+PSTVTE
Sbjct: 61  GFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF +FFSKYGKV EHQIIRDHETNRSRGFGFI+F+ EEVVDE++S GNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA AYGSNSR+RSF+DGFGG+GSSYG  D+GFGPGP+RTPGG+G R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLG 240

Query: 241 SGYGYGSSG-DFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
              GYGSSG +FGGGYGGFG +SLGGYRGESSLGYSSRFGPY GGF GGYG SGLGGYGR
Sbjct: 241 GYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYG+YG S Y GGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of Cp4.1LG06g08260 vs. NCBI nr
Match: gi|1009111463|ref|XP_015901084.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 578.6 bits (1490), Expect = 1.3e-161
Identity = 294/348 (84.48%), Postives = 316/348 (90.80%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y  FNKHFG YGEI DSVIMKDR+TGQPR
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNYATFNKHFGKYGEIVDSVIMKDRFTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPS+ TE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSSCTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF  FF+KYGKV EHQIIRDHETNRSRGFGFI+F+ EEVVDE+LS GNMIDM+GTQVEI
Sbjct: 121 DEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDELLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA AYGSNSR+RSFNDGFGG+G SYG  D G+GPGP+RTP GLG+R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGYGPGPYRTPAGLGSRLG 240

Query: 241 SGYGYGS-SGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
            GYGYGS SG+FGGGYG FG +SLGGYRGESSLGY+SR+GPY GGFGGGYG S LGGYGR
Sbjct: 241 GGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGGGFGGGYGASSLGGYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYG YG+S YGGGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of Cp4.1LG06g08260 vs. NCBI nr
Match: gi|1009138621|ref|XP_015886683.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 577.8 bits (1488), Expect = 2.3e-161
Identity = 294/348 (84.48%), Postives = 316/348 (90.80%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPR 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y  FNKHFG YGEI DSVIMKDR+TGQPR
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNYATFNKHFGKYGEIVDSVIMKDRFTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQ KDFKTKKIFVGGIPS+ TE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSSCTE 120

Query: 121 DEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEI 180
           DEF  FF+KYGKV EHQIIRDHETNRSRGFGFI+F+ EEVVDE+LS GNMIDM+GTQVEI
Sbjct: 121 DEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDELLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIG 240
           KKAEPKK+SNPPPA AYGSNSR+RSFNDGFGG+G SYG  D G+GPGP+RTP GLG+R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGYGPGPYRTPTGLGSRLG 240

Query: 241 SGYGYGS-SGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
            GYGYGS SG+FGGGYG FG +SLGGYRGESSLGY+SR+GPY GGFGGGYG S LGGYGR
Sbjct: 241 GGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGGGFGGGYGASSLGGYGR 300

Query: 301 GVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 348
           G +GYG YG+S YGGGYDSGPGASYGGA GLYGRGGYSG SRYHPYAR
Sbjct: 301 GGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g08260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNP1_ARATH	4.4e-40	35.63	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S...	[more]
HRP1_YEAST	3.3e-35	38.36	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain...	[more]
DAZP1_MOUSE	2.6e-32	37.28	DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=1 SV=2	[more]
RBP1_ARATH	3.4e-32	35.57	RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBP1 PE=2 SV=1	[more]
MSIR6_DROME	9.9e-32	34.92	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2...	[more]

BLAST of Cp4.1LG06g08260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W8_CUCSA	8.4e-179	93.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1	[more]
A5APB9_VITVI	1.1e-162	85.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=...	[more]
A0A067KWH0_JATCU	3.0e-160	85.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1	[more]
A0A067EVW0_CITSI	8.7e-160	83.91	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1	[more]
B9S9X4_RICCO	2.5e-159	84.20	Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM...	[more]

BLAST of Cp4.1LG06g08260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13224.2	3.1e-124	70.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G40490.1	1.8e-87	57.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	3.8e-50	40.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	2.5e-41	35.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	6.8e-39	36.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG06g08260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126124\|ref\|XP_008463022.1\|	5.4e-179	93.95	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo]	[more]
gi\|449463368\|ref\|XP_004149406.1\|	1.2e-178	93.66	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus]	[more]
gi\|225461983\|ref\|XP_002271592.1\|	1.6e-162	85.63	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera]	[more]
gi\|1009111463\|ref\|XP_015901084.1\|	1.3e-161	84.48	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba]	[more]
gi\|1009138621\|ref\|XP_015886683.1\|	2.3e-161	84.48	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g08260.1	Cp4.1LG06g08260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..88 score: 1.3E-13coord: 377..439 score: 2.0E-15coord: 109..171 score: 2.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..181 score: 1.4E-18coord: 376..449 score: 1.4E-18coord: 20..91 score: 1.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 107..185 score: 18.598coord: 375..453 score: 18.598coord: 19..95 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 5..98 score: 4.4E-22coord: 103..191 score: 2.0E-23coord: 363..459 score: 9.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 105..214 score: 3.49E-24coord: 370..482 score: 2.42E-24coord: 15..98 score: 2.15
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 1..130 score: 2.3E-146coord: 554..608 score: 2.3E-146coord: 366..497 score: 2.3E
None	No IPR available	PANTHER	PTHR24012:SF478	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJH23	coord: 554..608 score: 2.3E-146coord: 1..130 score: 2.3E-146coord: 366..497 score: 2.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g08260	Cucsa.240780	Cucumber (Gy14) v1	cgycpeB0648
Cp4.1LG06g08260	CmaCh09G010220	Cucurbita maxima (Rimu)	cmacpeB060
Cp4.1LG06g08260	CmaCh01G010650	Cucurbita maxima (Rimu)	cmacpeB508
Cp4.1LG06g08260	CmoCh01G011070	Cucurbita moschata (Rifu)	cmocpeB464
Cp4.1LG06g08260	CmoCh09G010250	Cucurbita moschata (Rifu)	cmocpeB034
Cp4.1LG06g08260	Cla003326	Watermelon (97103) v1	cpewmB753
Cp4.1LG06g08260	Csa7G278740	Cucumber (Chinese Long) v2	cpecuB803
Cp4.1LG06g08260	MELO3C024961	Melon (DHL92) v3.5.1	cpemeB710
Cp4.1LG06g08260	ClCG09G021490	Watermelon (Charleston Gray)	cpewcgB689
Cp4.1LG06g08260	CSPI07G11980	Wild cucumber (PI 183967)	cpecpiB803
Cp4.1LG06g08260	Lsi02G018140	Bottle gourd (USVL1VR-Ls)	cpelsiB633
Cp4.1LG06g08260	MELO3C024961.2	Melon (DHL92) v3.6.1	cpemedB847
Cp4.1LG06g08260	CsaV3_7G023900	Cucumber (Chinese Long) v3	cpecucB0993
Cp4.1LG06g08260	Bhi09G001499	Wax gourd	cpewgoB0989
Cp4.1LG06g08260	CsGy7G011160	Cucumber (Gy14) v2	cgybcpeB985
Cp4.1LG06g08260	Carg24748	Silver-seed gourd	carcpeB0608
Cp4.1LG06g08260	Carg23341	Silver-seed gourd	carcpeB0111

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG06g08260	Cp4.1LG02g00500	Cucurbita pepo (Zucchini)	cpecpeB460

The following block(s) are covering this gene:

None