Carg23341 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23341
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	Cucurbita_argyrosperma_scaffold_165 : 16505 .. 19197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTACCCTCTTTCAATTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTTATCGATCTTCTTCGACAACGCATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGTTTGTTTCTTTTCCTTTCTCAATTTTTATGTTCTTTCGGTGTTTCTCTGAGAAAGTTTGATGAGTCGGGGAAAAGGGCTTTCTTAAGCGCCAGATTCCATTACTATATGTCACCCCCTCTCAGGCCTGTCAAACAGTTCCTTTGTCTTGATTTTCTTTAGATCTCGATTTTGTGTTCTCACTTTTTTTGCTATTTTTGTTTTCCCAGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACAGTGAGTTTTTGTTTTATTTTAATCATGTATTAGGAACGAGTTTCTGTACCCATGTTTAATTCTGCTGAAATTACCTGTTATTCTTGATGGGTGTTCATTTTTTGAATGGCTAGCTTAGCACCTCTTCTATTGCGGTTCATTGATAATTAAATGAATTCTTGATTTGCTAATTCTGTATATTGATTAAGTGCAATGTTAGCTTAGATTCGGCTGCAGCTGATGTTCTTTTTCATTGTGTTCTTGGAAAAATTAGCTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCCGTGGTTGACAAGGTTATCGAAGATACACACGTCATAAATGGAAAACAGGTACGTCATCTTAATTGTTTTGCTTTTCTTCTTCCTGCTAACTGGCTTACACCACATTATATTCTACTGGGTTGTTGAATGGCGTAAAATATTTTTGTTTCCCGTGGTCTTATGAGGTTAATTATTAGTCTTTTTCTGTATTTTATTGGATGGTTTATAATCATACAGTTGTAATATGATTGTCGTTGCATGAATTTATGCTTTATTTATTTTATTTCTGGGATTTACTTTGCTAAATGGAGATAGGTTGAAATCAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGGTAAGGTTATTGAGTTATATGTTGAAGCGTGTTCTTTATTGGCAGGACCAGTGTTTGTTTCAGCCACTTTTTATTTGATCTTCTCATATTGATGTAGTTTCTATGTTGTGTTTTAATATGTTTATTACGTATCTTGCTTGTAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAACGGACCGCAAGTGAGCAAAGTGTAAACCAAATTGTGTTTCCCATGGGTTTTGCACCATCGTATTTTCCAGTTTTAATAACAATGGACAATTTTCAACCCTTTCACTTTATACAATCGTATCTTTTAAGTATTATGCGATTAGCTGCTTCTTTTTGCTACTAATTTTAGGTTGAGGTTATACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTTAAATTGCAGAAGATCTAGGTTAACTAAGTTACTTTGTTGTAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAGAATCGTTGCGTAGTCAGTACCGTCCATCTCCTTGGAAGCTAGAACAGAAGTCTCACTCGAACGCTGTCTCGCCTAAGAATTGCCATAGAGTTTTTCAAACACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCAGTGTTCTCTCACAAATAACACTAGAGGTCCAAGGATGCTTTGGAAAAGACGAGAAAGAGTGTATTAGACTTTTTATTGTATGGTTTTAGACACTATTATGTAGACTACACTACTGCAAGCTAGTTTCTGCCTAATATGGTTGTCCCCATCTAGTACAATTTCAATGTAGTGTGCTGTGCTGCTCTGCTGTAGGCTTTAGCATACACTTATATTTCTCGGTTATGTTTATTCGTCACGTTAGTTCGATAAACTAGATAGAGATATTAGATG

mRNA sequence

CATTACCCTCTTTCAATTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTTATCGATCTTCTTCGACAACGCATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCCGTGGTTGACAAGGTTATCGAAGATACACACGTCATAAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTTGAGGTTATACAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAGAATCGTTGCGTAGTCAGTACCGTCCATCTCCTTGGAAGCTAGAACAGAAGTCTCACTCGAACGCTGTCTCGCCTAAGAATTGCCATAGAGTTTTTCAAACACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCAGTGTTCTCTCACAAATAACACTAGAGGTCCAAGGATGCTTTGGAAAAGACGAGAAAGAGTGTATTAGACTTTTTATTGTATGGTTTTAGACACTATTATGTAGACTACACTACTGCAAGCTAGTTTCTGCCTAATATGGTTGTCCCCATCTAGTACAATTTCAATGTAGTGTGCTGTGCTGCTCTGCTGTAGGCTTTAGCATACACTTATATTTCTCGGTTATGTTTATTCGTCACGTTAGTTCGATAAACTAGATAGAGATATTAGATG

Coding sequence (CDS)

ATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCCGTGGTTGACAAGGTTATCGAAGATACACACGTCATAAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCTAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTTGAGGTTATACAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTCGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAG

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR

Homology

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BLAST of Carg23341 vs. NCBI nr
Match: XP_022941092.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_022981531.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 476.5 bits (1225), Expect = 7.9e-131
Identity = 239/244 (97.95%), Postives = 239/244 (97.95%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL
Sbjct: 181 -QVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

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BLAST of Carg23341 vs. NCBI nr
Match: XP_023525200.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.6 bits (1220), Expect = 3.0e-130
Identity = 238/243 (97.94%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL
Sbjct: 181 -QVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 238

Query: 241 GGR 244
           GGR
Sbjct: 241 GGR 238

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BLAST of Carg23341 vs. NCBI nr
Match: XP_008463022.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 461.5 bits (1186), Expect = 2.6e-126
Identity = 230/244 (94.26%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFR  GG+
Sbjct: 181 -QVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGI 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

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BLAST of Carg23341 vs. NCBI nr
Match: XP_004149406.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390.1 hypothetical protein Csa_7G278740 [Cucumis sativus])

HSP 1 Score: 460.3 bits (1183), Expect = 5.9e-126
Identity = 229/244 (93.85%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGFGPGPFR  GG+
Sbjct: 181 -QVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGI 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

[Close]

BLAST of Carg23341 vs. NCBI nr
Match: XP_022139573.1 (heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia])

HSP 1 Score: 455.7 bits (1171), Expect = 1.4e-124
Identity = 227/244 (93.03%), Postives = 232/244 (95.08%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPS VDKV+EDTHVINGKQVEIKRTIP+GQGQSKDFKTKKIFVGGIP+TVTE
Sbjct: 61  GFGFITYADPSNVDKVMEDTHVINGKQVEIKRTIPRGQGQSKDFKTKKIFVGGIPATVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE +HFFSK GKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DEFRHFFSKHGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNPPP PAY SNSRARSFNDGFGGYG SYGDFD+GFGPGPFRT GGL
Sbjct: 181 -QVEIKKAEPKKSSNPPPVPAYASNSRARSFNDGFGGYGSSYGDFDSGFGPGPFRTPGGL 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

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BLAST of Carg23341 vs. TAIR10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 354.4 bits (908), Expect = 8.2e-98
Identity = 183/237 (77.22%), Postives = 202/237 (85.23%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT T FNKHFG YGEITDSVIM+DR+TGQPR
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTV 120
           GFGFIT+ADPSVVDKVIEDTHVINGKQVEIKRTIPKG G  QSKD KTKKIFVGGIPSTV
Sbjct: 61  GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120

Query: 121 TEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQV 180
           TEDELK FF+K+G VVEHQ+IRDHETNRSRGFGF++FD EEVVDE+LSKGNMIDM+ T  
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADT-- 180

Query: 181 EVIQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFG--PGP 234
              QVEIKKAEPKKS N  P P+YGS+ R RS ND +  YGG YG FD G+G  PGP
Sbjct: 181 ---QVEIKKAEPKKSLNRSP-PSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGP 231

[Close]

BLAST of Carg23341 vs. TAIR10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 263.8 bits (673), Expect = 1.5e-70
Identity = 131/198 (66.16%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYA 69
           PH+G G  S GKIF+GGLA++TT  +F KHFG YGEITDSVIMKDR TGQPRGFGF+TYA
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91

Query: 70  DPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFS 129
           D SVVDKVI+D H+I GKQVEIKRTIP+G   S DFKTKKIFVGGIPS+V +DE K FF 
Sbjct: 92  DSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFM 151

Query: 130 KFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQVEIKKA 189
           +FG++ EHQI+RDH T RSRGFGF+ ++ E++VD +L+KGN I++SGT     QVEIKKA
Sbjct: 152 QFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGT-----QVEIKKA 211

Query: 190 EPKK-SSNPPPAPAYGSN 206
           EPKK +S   P+  +G +
Sbjct: 212 EPKKPNSVTTPSKRFGDS 224

[Close]

BLAST of Carg23341 vs. TAIR10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 196.1 bits (497), Expect = 3.8e-50
Identity = 92/195 (47.18%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 16  ASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75
           +SPGK+F+GG++ +TT   F  +FG +GE+ DSVIM DR TG PRGFGF+T+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 76  VIEDTHVINGKQVEIKRTIPKGQGQS---KDFKTKKIFVGGIPSTVTEDELKHFFSKFGK 135
           V+E+ HVI+ ++V++KRT+P+G   +      KT+KIFVGG+P  + EDELK++F  +G 
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGD 182

Query: 136 VVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQVEIKKAEPKK 195
           ++EHQI+ DH T RSRGFGF+ F  E+ VD + S G + ++        QVEIK+AEPK+
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDK-----QVEIKRAEPKR 242

Query: 196 SSNPPPAPAYGSNSR 208
           +       +YG++ +
Sbjct: 243 TGRDNSFRSYGASGK 252

[Close]

BLAST of Carg23341 vs. TAIR10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 90/210 (42.86%), Postives = 129/210 (61.43%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+FIGG++ DT   +  ++FG YG++ ++VIM+DR TG+ RGFGFI +ADPSV ++VI 
Sbjct: 15  GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 74

Query: 79  DTHVINGKQVEIKRTIPKGQ-------------------GQSKDFKTKKIFVGGIPSTVT 138
           D H+I+G+ VE K+ +P+                     G     +TKKIFVGG+PS++T
Sbjct: 75  DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134

Query: 139 EDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVE 198
           E E K++F +FG + +  ++ DH T R RGFGFI FD EE VD +L K    +++G  VE
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK-TFHELNGKMVE 194

Query: 199 VIQVEIKKAEPKKSS----NPPPAPAYGSN 206
           V     K+A PK+ S    N  P   YG+N
Sbjct: 195 V-----KRAVPKELSSTTPNRSPLIGYGNN 218

[Close]

BLAST of Carg23341 vs. TAIR10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 162.2 bits (409), Expect = 6.0e-40
Identity = 91/243 (37.45%), Postives = 137/243 (56.38%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+FIGG++ DT   +   +F +YG++ ++VIM+DR TG+ RGFGFI +ADP V ++VI 
Sbjct: 6   GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65

Query: 79  DTHVINGKQVEIKRTIPKGQGQ----------------SKDFKTKKIFVGGIPSTVTEDE 138
           D H+I+G+ VE K+ +P+   Q                    +TKKIFVGG+PS++TE+E
Sbjct: 66  DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125

Query: 139 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQ 198
            K++F +FG + +  ++ DH T R RGFGFI FD ++ VD +L K    +++G  VEV +
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK-TFHELNGKLVEVKR 185

Query: 199 VEIKKAEPKKSSNPPPAPA--YGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 244
              K+  P  +   P A    YG  S     N  F  +           GPG + + G +
Sbjct: 186 AVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAP---------GPGFYNSLGPV 238

[Close]

BLAST of Carg23341 vs. Swiss-Prot
Match: sp|Q8W034|RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-38
Identity = 76/188 (40.43%), Postives = 121/188 (64.36%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF +YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI----------------PKGQGQSKDFKTKKIFVGGIPSTVTEDE 138
           + H I+ ++V++KR +                 +  G     KTKKIFVGG+P T+T++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 139 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQ 191
            + +F  +G V +  I+ D  TNR RGFGF+ FD E+ VD +L K    D+SG QVEV +
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKR 185

[Close]

BLAST of Carg23341 vs. Swiss-Prot
Match: sp|Q99383|HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRP1 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-34
Identity = 73/172 (42.44%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 20  KIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED 79
           K+FIGGL  DTT     ++FG YG +TD  IMKD  TG+ RGFGF+++  PS VD+V++ 
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219

Query: 80  THVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQII 139
            H+++GK ++ KR IP+ +      KT KIFVGGI   V   E + FFS++G +++ Q++
Sbjct: 220 QHILDGKVIDPKRAIPRDEQD----KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 279

Query: 140 RDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQVEIKKAEPK 192
            D +T +SRGFGF+ +D  + VD +  +   ID         ++EIK+AEP+
Sbjct: 280 LDKDTGQSRGFGFVTYDSADAVDRV-CQNKFIDFKDR-----KIEIKRAEPR 321

[Close]

BLAST of Carg23341 vs. Swiss-Prot
Match: sp|Q9VVE5|MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-34
Identity = 76/193 (39.38%), Postives = 122/193 (63.21%), Query Frame = 0


Query: 5   SKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGF 64
           S SE P+      PGK+FIGGL+  T+      +FG YG+I+++++MKD  T + RGFGF
Sbjct: 20  SPSEVPN-----DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGF 79

Query: 65  ITYADPSVVDKVI-EDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDEL 124
           +T++DP+ VDKV+ + TH ++GK+V+ K   P+        +TKKIFVGG+ +  T +++
Sbjct: 80  VTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDV 139

Query: 125 KHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQV 184
           K +F +FG + +  ++ D +TNR RGFGF+ F  E+VVD++       ++   ++    V
Sbjct: 140 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKV------CEIHFHEINNKMV 199

Query: 185 EIKKAEPKKSSNP 197
           E KKA+PK+   P
Sbjct: 200 ECKKAQPKEVMLP 201

[Close]

BLAST of Carg23341 vs. Swiss-Prot
Match: sp|P48809|RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 8.9e-33
Identity = 86/229 (37.55%), Postives = 138/229 (60.26%), Query Frame = 0


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GGL+ +TT    +++F  +G+I D V+MK+  +G+ RGFGF+T+ADP+ V+ V++
Sbjct: 7   GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66

Query: 79  D-THVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQ 138
           +  H ++G+ ++ K   P+   + K     K+F+GG+PS VTE +L+ FF+++GKV E  
Sbjct: 67  NGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVV 126

Query: 139 IIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEVIQVEIKKAEPKKSSNPP 198
           I+ D E  +SRGFGF+ F+EE  V+ + ++   I+++G      QVEIKKAEP+  S   
Sbjct: 127 IMYDQEKKKSRGFGFLSFEEESSVEHVTNE-RYINLNGK-----QVEIKKAEPRDGSG-- 186

Query: 199 PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGP--GPFRTAGGLGGRI 245
                G NS     N   GG  G  G+  + +GP   P     G  G++
Sbjct: 187 -----GQNSN----NSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQM 218

[Close]

BLAST of Carg23341 vs. Swiss-Prot
Match: sp|O94432|YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-32
Identity = 74/196 (37.76%), Postives = 118/196 (60.20%), Query Frame = 0


Query: 3   SKSKSENPHTGDGASP-----GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTG 62
           S +   N    +  SP     GK+FIGGL  +TT      +F  +GE+ D  +M+D  TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201

Query: 63  QPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPST 122
           + RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+ + +    KT K+FVGG+P  
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE----KTAKMFVGGVPGD 261

Query: 123 VTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQ 182
            TE+E ++FF++FG+V++  ++ D +T R RGFGF+ ++ E  V+  +S+   I + G  
Sbjct: 262 CTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKP 321

Query: 183 VEVIQVEIKKAEPKKS 194
           VEV     K+A PK S
Sbjct: 322 VEV-----KRATPKAS 327

[Close]

BLAST of Carg23341 vs. TrEMBL
Match: tr|A0A1S3CI79|A0A1S3CI79_CUCME (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501266 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 1.7e-126
Identity = 230/244 (94.26%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFR  GG+
Sbjct: 181 -QVEIKKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGI 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

[Close]

BLAST of Carg23341 vs. TrEMBL
Match: tr|A0A0A0K3W8|A0A0A0K3W8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 3.9e-126
Identity = 229/244 (93.85%), Postives = 235/244 (96.31%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGT    
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGFGPGPFR  GG+
Sbjct: 181 -QVEIKKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGI 239

Query: 241 GGRI 245
           GGRI
Sbjct: 241 GGRI 239

[Close]

BLAST of Carg23341 vs. TrEMBL
Match: tr|A5APB9|A5APB9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0015g00920 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.3e-108
Identity = 200/240 (83.33%), Postives = 214/240 (89.17%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTHVINGKQVEIKRTIPKG GQSKDFKTKKIFVGG+PSTVTE
Sbjct: 61  GFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE K+FFSK+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE++SKGNMIDM+GT    
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKK+SNPPPAPAYGSNSRARSF+DGFGG             PGP+RT GG+
Sbjct: 181 -QVEIKKAEPKKASNPPPAPAYGSNSRARSFSDGFGGXXXXXXXXXXXXXPGPYRTPGGV 235

[Close]

BLAST of Carg23341 vs. TrEMBL
Match: tr|A0A1Q3AVC3|A0A1Q3AVC3_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03190 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 2.8e-108
Identity = 202/244 (82.79%), Postives = 214/244 (87.70%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SK KSENPH+GDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MGSKIKSENPHSGDGASPGKIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKG GQSKDFKTKKIFVGGIPSTV+E
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSTVSE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           D L+ FFSK+GKVVEHQIIRDHETNRSRGFGF++FD EEVVDE+LSKGNMIDMSGT    
Sbjct: 121 DALEGFFSKYGKVVEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMSGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGL 240
            QVEIKKAEPKK+SNPPPAP+YGSNSRARSFNDG+               PGP+RT GGL
Sbjct: 181 -QVEIKKAEPKKASNPPPAPSYGSNSRARSFNDGYXXXXXXXXXXXXXXXPGPYRTPGGL 239

Query: 241 GGRI 245
           GGR+
Sbjct: 241 GGRL 239

[Close]

BLAST of Carg23341 vs. TrEMBL
Match: tr|A0A2C9W8Y1|A0A2C9W8Y1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G143000 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.5e-106
Identity = 192/217 (88.48%), Postives = 204/217 (94.01%), Query Frame = 0


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTH+INGKQVEIKRTIPKG GQSKDFKTKKIFVGGIPS+VTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEV 180
           DE K+FFSK+GKVVEHQIIRDHETNRSRGFGFI+FD EE VD++LSKGNMIDM+GT    
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDNEETVDQMLSKGNMIDMAGT---- 180

Query: 181 IQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGG 218
            QVEIKKAEPKK+SNPPPAPAYGSNSR+RS+NDGFGG
Sbjct: 181 -QVEIKKAEPKKASNPPPAPAYGSNSRSRSYNDGFGG 212

The following BLAST results are available for this feature:

BLAST of Carg23341 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941092.1	7.9e-131	97.95	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata] >XP_02298153...	[more]
XP_023525200.1	3.0e-130	97.94	heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008463022.1	2.6e-126	94.26	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo]	[more]
XP_004149406.1	5.9e-126	93.85	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN44390...	[more]
XP_022139573.1	1.4e-124	93.03	heterogeneous nuclear ribonucleoprotein 1 [Momordica charantia]	[more]

BLAST of Carg23341 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13224.2	8.2e-98	77.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G40490.1	1.5e-70	66.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	3.8e-50	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	2.9e-42	42.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	6.0e-40	37.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg23341 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W034\|RNP1_ARATH	1.8e-38	40.43	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
sp\|Q99383\|HRP1_YEAST	6.2e-34	42.44	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain...	[more]
sp\|Q9VVE5\|MSIR6_DROME	8.0e-34	39.38	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]
sp\|P48809\|RB27C_DROME	8.9e-33	37.55	Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster OX=7227 G...	[more]
sp\|O94432\|YHKF_SCHPO	4.4e-32	37.76	Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Carg23341 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI79\|A0A1S3CI79_CUCME	1.7e-126	94.26	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350126...	[more]
tr\|A0A0A0K3W8\|A0A0A0K3W8_CUCSA	3.9e-126	93.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G278740 PE=4 SV=1	[more]
tr\|A5APB9\|A5APB9_VITVI	1.3e-108	83.33	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0015g00920 PE=4 SV=...	[more]
tr\|A0A1Q3AVC3\|A0A1Q3AVC3_CEPFO	2.8e-108	82.79	RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03...	[more]
tr\|A0A2C9W8Y1\|A0A2C9W8Y1_MANES	4.5e-106	88.48	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G143000 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23341-RA	Carg23341-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..181 e-value: 5.1E-20 score: 82.5 coord: 20..91 e-value: 1.1E-19 score: 81.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..88 e-value: 4.5E-14 score: 51.9 coord: 109..175 e-value: 1.3E-17 score: 63.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..190 score: 18.615
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 19..95 score: 15.323
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 99..224 e-value: 9.8E-24 score: 85.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 5..98 e-value: 3.1E-22 score: 80.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..206
None	No IPR available	PANTHER	PTHR45276	FAMILY NOT NAMED	coord: 1..352
None	No IPR available	PANTHER	PTHR45276:SF1	SUBFAMILY NOT NAMED	coord: 1..352
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 15..100
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 103..218

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23341	Cla003326	Watermelon (97103) v1	carwmB0074
Carg23341	Csa7G278740	Cucumber (Chinese Long) v2	carcuB0085
Carg23341	MELO3C024961	Melon (DHL92) v3.5.1	carmeB0076
Carg23341	ClCG09G021490	Watermelon (Charleston Gray)	carwcgB0075
Carg23341	CSPI07G11980	Wild cucumber (PI 183967)	carcpiB0089
Carg23341	Cucsa.240780	Cucumber (Gy14) v1	carcgyB0087
Carg23341	CmaCh01G010650	Cucurbita maxima (Rimu)	carcmaB0099
Carg23341	CmaCh09G010220	Cucurbita maxima (Rimu)	carcmaB0098
Carg23341	CmoCh01G011070	Cucurbita moschata (Rifu)	carcmoB0107
Carg23341	CmoCh09G010250	Cucurbita moschata (Rifu)	carcmoB0106
Carg23341	Lsi02G018140	Bottle gourd (USVL1VR-Ls)	carlsiB067
Carg23341	Cp4.1LG02g00500	Cucurbita pepo (Zucchini)	carcpeB0110
Carg23341	Cp4.1LG06g08260	Cucurbita pepo (Zucchini)	carcpeB0111
Carg23341	CsGy7G011160	Cucumber (Gy14) v2	carcgybB0085
Carg23341	MELO3C024961.2	Melon (DHL92) v3.6.1	carmedB0077
Carg23341	CsaV3_7G023900	Cucumber (Chinese Long) v3	carcucB0092
Carg23341	Cla97C09G182880	Watermelon (97103) v2	carwmbB0073
Carg23341	Bhi09G001499	Wax gourd	carwgoB0088

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23341	Carg24748	Silver-seed gourd	carcarB088

The following block(s) are covering this gene:

None