Lsi02G013280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G013280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Pentatricopeptide repeat superfamily protein
Location	chr02 : 17769215 .. 17773175 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACGGAAGAAGCAGTTCCACGCCGCCTGGCGTTTCCATTCTCCTCCACGGCTCAGCCATCCGAGGCGGCACCACGTCAAAGGTATTTTTTTTCTTCTCATTCCTACTGTTCTTCGTGAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCAATAATCCGATGGCAATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCGTCGGTATTTGTACGATGTCTAACGAGGAGACCAATTAGTGATATCCCATTACCAGCGAAATCGACTATTACTGGACTTCAGACGGATTCGAGCCGACCCTTATGGGTATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCACTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGCCATGTTTTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGGTTTGTTCCCCCTTCCTTTTCTTCTATATGTTCTGTCCTTTTTGTAGCTCTTTCTGAATCTTGCCATACATTTTAGATTTTACTTCATGGGTTGTCTCAGAAATAGTTAATGGGCTTCTGTAAATTACACATAATATCGCTATCTTGCTCTTTTTTGTTGTCACTGCAACTTCTTTACCTAGTTAGTTGATGCTGTGAGTTCTTTTTTCCTTCTTAACTGTTATGTTATTGATTGTTATTTACTTTAGGTGAATAACTTTGCTAATGCTGCATTCAAGCTTCTATTCTGCTCTTGAATTTCTAAGATTATGTTTCTCAGCTTCTAGCTTTCTTAGTATGAATATGATGTTCTTGACTTTATGTCTCCTTTCATGGAGCTATTGTGCAATTTTTTTCAAGTTTCAGCTCTTCCTCTCTTTATGCATGGTAGTAATTGAAGCATGCTTAAGGAAGGTCATAGAGGAAGTAAATTCATGTATTGGTGTTCCTTTAAATGATATTATGAGTTTTTTTTTTCCCACTTCCTCTTATATGTTTAGGCTTGATTTATGTCGAGGATGTTGCCTTTGCATTCAAGATTCTTTCTTCCATATGAATACTGCTTGTTTCTCTCTTGTTCAACTCTGATCTGCCCCTTTGAGTGCTTATCAGATCTAGTTCATACTTTTTGTATGAATTAAGATCTCAAATATGAAATCTAGTTCACTCTGGTTGCATGTGGAACGTTTGCTTTTATATTCTTTTATCTTCAACTCGGGATTGAATTGATTTTATTTCATCGTGTCTGTGAATCTTACATGTTGAATTTTCTAGATATTTAGGTTGATTCGAAAACAAGACTGGTACACACCTGATGTTTTTATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTCCCCGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGTTGAGGTATCTATGCAACTCTTTTTTCCTCTTTAAATCTTTCTTTTCCATTAACGTTGACATTTGTTGTATTTTGAAGGATGGTAGTACTTAGTAAGCAGTTATAGTAGGCCATTCGCCATTGTATGGTTTATAAATTCAAAATCCTTAAGTTACTTGTGACAGTTAACATCTTTCAAGTTTTTAAATACCAAATAGTTTTCACTTTTTTGAAGTAATTGGAAAATGGCCAAAACGTGCCTGTGAAAGACAGTAAAATTCGCTTGACGAGCACAAAGGAGGTAGGATAAAGATTTGATCAGATATAGAGCGAGTCATGTGGATAGTAGTTGAGTTGGAGCCTAAAACTCTCTTAGTCTTAGGGTTCTCTCGTCTTGGATACTTGGGAAGAGGATCAAGTGAGTCATGTGGTCCTTGTAAACAACTTGATGCACTATCTTCTTTCAGCCCTTTAAATGAAATGCACCAAAACTTTAAAGGGAGGAAAATCCATAGATCAACCACCCCATCATCTCTGCTCTGTAAAAACTGTAAACAGCAAGATCACCCTTTGGATGTCTTCAATATTTAGGGGTTACGAACCAACCATAGAGTCCTATTCAACAGGTGAGGGACTTATCCTCCACCCTCCCTTTCGTGATAAAATTTTGGTTAATATAATATATTACACATATTAATAAAAAAAATTGGTTTTATTAGGATGATAAACATAGCATTGTGCTCATTCAATTTTAAAAACAAATTAAAGTACTGAATCCTAATGAAATTAATAATTAAAATTGTAAAATAATATTTGTACATAGAATGTGGATAGTTGATTTTATTTTTAATGGCAAGCAACGGTGATAGTCGGTTCGGTTTTATCAGTTTTGGAGCCAACCAAGAACTAAACCAAACCAATGGTTTTACAAAGAAAGATCCAAACTAATGTTCAATAAAGAATAAAACCAATGGATTGGTTTTTATTTGGTTCAATTTATTATTGGTTTGGTTCTTAGTTTTTGGTATTTTTATTTTTTTCTTTCAAATTTTTATTTTTATTTCCACCTTTGTTTTGAATTGGTTATTTTTGCTAATTTTAAATTAAAATTGGGTAAATTTCTTTTTTTTATAGATTGAAATTTGATGTTTTTGTTTTTTATTGGCACTTTTTTAAATAAAAAATATACAAACCCCATAATAGTTGGTCTTTTTTTTCTTCTAAACAACAAATATACATGCACCATAATGATTAAAATACTAAAAGGTACCTAATGTTAGAGTTTATTTTTAAGGGTATATATATACCATTGGTTCGGTTTGGTTTTGATTGGTTTTTTTAAATAAAAAATCGATACAAACCAATACATCCAATTTTATACTAAAAAAATCAAACTAAACTATTGGATTGATTTGAATTGGTTTGGTTTTTCGATTTTCGGTAATTGCAAGGGGTAAAAGATGGAGAAGAATAATGAGAATATGAGATAGTAACCAAGTGGGGATTGGGAACAAAAAGCAAAAGCATCTTTCCTCAAATCTCATATCCCCACCAATAAAGAAATCCCTAGTGATCCCAAATTAAATAATTTTTATTTCAATTGGAGAAGCCTTTTGGATATTTATTGAGTGGCTCATTTGGTCAAAAAAAAAAAAAAAAAAAACCAAACAAACAAACATATGCTCATTCTCTAGGAAGATATTTGATTCTCATTTTTCATAAGTTTTGGGTTCTTCTTGATAATTAAGTTGGATGAATTAACGATATATTTGAATGGTATAAGAATAAGTTCCATTAACCTTCCTGTAAAAAGGATCATGAGAATAATAAATTTAATCAATTGGTTAAAGTATTATAATTTCTGTCATGATATAAATAAAAATTATTTCAAATCAGGAAAGTGCGAGGAAGAATATTTTTAACCCAAATCTAGTCCTGCTTTCGTCGATGATGATGGTTGACGACTAGACGATAAGATTGCTAAAGGAGGGGTTGAAGGAAGAAGAGGTAAGAGAAAGATGAGGAGGATCATGTGAAGGAGAGCAAATAAGTAAACTTTTTTTTTTAAAAAAAAATTATACTATTATTATTATTATTATTATTTTAAAAGTTTACACATTAGCGTCGAGTTAACGAAGCTGTTAATCGAGTGGTCGAATTGAATTATATCATAAACTTTGAAAACTTGATTGTACGACTTTAGAACTTAATGGTATGTTTGGAACCTCATGATTTTGATA

mRNA sequence

CTAAAACGGAAGAAGCAGTTCCACGCCGCCTGGCGTTTCCATTCTCCTCCACGGCTCAGCCATCCGAGGCGGCACCACGTCAAAGGTATTTTTTTTCTTCTCATTCCTACTGTTCTTCGTGAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCAATAATCCGATGGCAATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCGTCGGTATTTGTACGATGTCTAACGAGGAGACCAATTAGTGATATCCCATTACCAGCGAAATCGACTATTACTGGACTTCAGACGGATTCGAGCCGACCCTTATGGGTATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCACTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGCCATGTTTTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAACAAGACTGGTACACACCTGATGTTTTTATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTCCCCGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGTTGAGGAAAGTGCGAGGAAGAATATTTTTAACCCAAATCTAGTCCTGCTTTCGTCGATGATGATGGTTGACGACTAGACGATAAGATTGCTAAAGGAGGGGTTGAAGGAAGAAGAGGTAAGAGAAAGATGAGGAGGATCATGTGAAGGAGAGCAAATAAGTAAACTTTTTTTTTTAAAAAAAAATTATACTATTATTATTATTATTATTATTTTAAAAGTTTACACATTAGCGTCGAGTTAACGAAGCTGTTAATCGAGTGGTCGAATTGAATTATATCATAAACTTTGAAAACTTGATTGTACGACTTTAGAACTTAATGGTATGTTTGGAACCTCATGATTTTGATA

Coding sequence (CDS)

CTAAAACGGAAGAAGCAGTTCCACGCCGCCTGGCGTTTCCATTCTCCTCCACGGCTCAGCCATCCGAGGCGGCACCACGTCAAAGGTATTTTTTTTCTTCTCATTCCTACTGTTCTTCGTGAAGAATCTTCTCATCCCACTGTGAACTCGGGCGGCAATAATCCGATGGCAATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCGTCGGTATTTGTACGATGTCTAACGAGGAGACCAATTAGTGATATCCCATTACCAGCGAAATCGACTATTACTGGACTTCAGACGGATTCGAGCCGACCCTTATGGGTATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCACTTTTCGTTATTCAGGGATTGAAGCGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGCCATGTTTTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAACAAGACTGGTACACACCTGATGTTTTTATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTCCCCGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCAGAAGAGATATTCGGCCTACGTTGA

Protein sequence

LKRKKQFHAAWRFHSPPRLSHPRRHHVKGIFFLLIPTVLREESSHPTVNSGGNNPMAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

Homology

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BLAST of Lsi02G013280 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 5.2e-98
Identity = 178/254 (70.08%), Postives = 210/254 (82.68%), Query Frame = 1


Query: 57  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGR 116
           AIR  SR K P FAS+F + +TR P I  I        T L     +P  VF   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 117 PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQE 176
           PRGPLWR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 177 EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 236
           E ALA+K+F +I+KQ+WY PDVF+YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 237 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELF 296
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 297 PDQHVYDPPEEIFG 309
           P++H YDPPEEIFG
Sbjct: 243 PEKHAYDPPEEIFG 255

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BLAST of Lsi02G013280 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 84/181 (46.41%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 126 IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 185
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 186 IRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 245
           +R++ WY PD+F Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 246 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 305
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 306 I 307
           I
Sbjct: 181 I 181

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BLAST of Lsi02G013280 vs. Swiss-Prot
Match: PP376_ARATH (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-09
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1


Query: 175 EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 234
           +V   +++F  + K D   P VFIY  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 235 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 277
             +I G+ + G+P  +  V E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

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BLAST of Lsi02G013280 vs. Swiss-Prot
Match: PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08
Identity = 45/161 (27.95%), Postives = 80/161 (49.69%), Query Frame = 1


Query: 121 RSRKAIGKEALFVI---QGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVA 180
           ++ K   ++A+ +I   +  K   E ++  +K +   VL  L   + A+  E        
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES------- 139

Query: 181 LAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEV 240
            A+++F L+R+Q WY P+V IY  LI+ L + K+ + A +L++ M  E    + + YT +
Sbjct: 140 -AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTAL 199

Query: 241 IRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL 278
           +  + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 VSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

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BLAST of Lsi02G013280 vs. Swiss-Prot
Match: PPR90_ARATH (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-08
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 179 AVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVI 238
           A ++F  +  +D + PDV  Y  LI    +SK+++D  +L+  M    L  D+ TYT +I
Sbjct: 384 AKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 443

Query: 239 RGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 277
           +G    G   +A  V++ M     PPD + + ILL GL
Sbjct: 444 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480

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BLAST of Lsi02G013280 vs. TrEMBL
Match: A0A0A0LVE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 2.7e-133
Identity = 236/255 (92.55%), Postives = 243/255 (95.29%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MAIRWFSRSKLPVFASVF++ LTRRPI D+PLP KSTIT  Q DS RP+W FRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           VALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Lsi02G013280 vs. TrEMBL
Match: M5W0S0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010266mg PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 3.6e-106
Identity = 188/255 (73.73%), Postives = 219/255 (85.88%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MA R FSRSK  +F+S+ +R L R    + PL  K  I   + +SS+P+  FRLYHDGRP
Sbjct: 1   MATRAFSRSKFAIFSSILLRGLKRTTTQETPLLRKFRIPESEIESSKPICGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEAL+VI GLKRFK+DEEKL KF+K+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALYVISGLKRFKDDEEKLGKFIKNHVLRLLKMDLIAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           V LA+K+F +IRKQDWY PDV++YKDLII+LARSKKMDD M LW+ M++E+LFPDSQTYT
Sbjct: 121 VNLAIKVFNVIRKQDWYNPDVYLYKDLIISLARSKKMDDVMLLWDGMKKEDLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFL  GSP+DAMN+YEDMK SPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLSSGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           +QHVYDPPEEIFG+R
Sbjct: 241 EQHVYDPPEEIFGVR 255

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BLAST of Lsi02G013280 vs. TrEMBL
Match: D7SK67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05640 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.8e-106
Identity = 189/254 (74.41%), Postives = 222/254 (87.40%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MAIR FSRSK+P+F++  ++ L + PI +     +     L+  S +PL   +LYHDGRP
Sbjct: 1   MAIRAFSRSKIPIFSAKILQNLIKAPIKE---STRFQFPVLEVGSYKPLLGSKLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEALFVI GLKRFK+DEE L KF+KSHVLRLLK+DM+AVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           V+LAV++FR+IRKQDWY PDV++YKDLIIALA+ KKMDDAM+LWESMR+E+LFPD QTYT
Sbjct: 121 VSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFLRYGSP+DAMN+YEDMKKSPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 296 DQHVYDPPEEIFGL 310
           D+HVYDPPEEIFG+
Sbjct: 241 DRHVYDPPEEIFGV 251

[Close]

BLAST of Lsi02G013280 vs. TrEMBL
Match: D7SJL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07800 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 3.1e-105
Identity = 187/254 (73.62%), Postives = 222/254 (87.40%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MAIR FSRSK+P+F++  ++ L + PI +     K     L+  S++PL+  + YHDGRP
Sbjct: 1   MAIRAFSRSKIPIFSAKILQSLIKSPIKE---STKFQFPVLEVASNKPLFGLKHYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEALFVI GLKRFK+DEEKL KF+KSHVLRLLK+DMIAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           V LAV++FR+ +KQDWY PDV++YKDLIIALA+ KKMD+AM+LWESMR+E+LFPD QTYT
Sbjct: 121 VTLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFLR+GSP+DAMN+YEDMKKSPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 296 DQHVYDPPEEIFGL 310
           D+HVYDPPEEIFG+
Sbjct: 241 DRHVYDPPEEIFGI 251

[Close]

BLAST of Lsi02G013280 vs. TrEMBL
Match: A0A0B0MH77_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_18987 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 1.9e-102
Identity = 179/253 (70.75%), Postives = 217/253 (85.77%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MA R FS+SK P+  S+ ++ LT+   +  P   K  I  +Q D  +P+  F+LYHDGRP
Sbjct: 1   MATRAFSKSKFPILTSILLQNLTKNSTTRSPFLVKPEIPPVQPDIHKPISGFKLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLW+ +K IGKEALFVI GLKRFK+DE+K+ KF+K+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWKGKKLIGKEALFVILGLKRFKDDEDKVLKFIKTHVLRLLKMDLIAVLSELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
            +LAVK+F +I+KQDWY PDV++YKDLIIALA+ +KMD+AMKLWESMR+ENLFPDSQTYT
Sbjct: 121 TSLAVKVFEVIQKQDWYKPDVYLYKDLIIALAKCRKMDEAMKLWESMRKENLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           E+IRGFLR GSP+DAMN+YEDM KSPDPP+ELPFRILLKGLLPHPLLRN+VK+DFEELFP
Sbjct: 181 EIIRGFLRDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRNKVKKDFEELFP 240

Query: 296 DQHVYDPPEEIFG 309
           ++H YDPPEEIFG
Sbjct: 241 EKHAYDPPEEIFG 253

[Close]

BLAST of Lsi02G013280 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 359.0 bits (920), Expect = 2.9e-99
Identity = 178/254 (70.08%), Postives = 210/254 (82.68%), Query Frame = 1


Query: 57  AIRWFSRSKLPVFASVFVRCLTRRP-ISDIPLPAKSTITGLQTDSSRPLWVF-RLYHDGR 116
           AIR  SR K P FAS+F + +TR P I  I        T L     +P  VF   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 117 PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQE 176
           PRGPLWR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 177 EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 236
           E ALA+K+F +I+KQ+WY PDVF+YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 237 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELF 296
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 297 PDQHVYDPPEEIFG 309
           P++H YDPPEEIFG
Sbjct: 243 PEKHAYDPPEEIFG 255

[Close]

BLAST of Lsi02G013280 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 188.3 bits (477), Expect = 6.9e-48
Identity = 84/181 (46.41%), Postives = 131/181 (72.38%), Query Frame = 1


Query: 126 IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 185
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 186 IRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 245
           +R++ WY PD+F Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 246 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 305
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 306 I 307
           I
Sbjct: 181 I 181

[Close]

BLAST of Lsi02G013280 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-16
Identity = 59/187 (31.55%), Postives = 93/187 (49.73%), Query Frame = 1


Query: 106 VFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFK---------------EDEEKLEKF 165
           V ++    + R PL R R  +  EA+  +Q LKR                      L++ 
Sbjct: 486 VIKMRDRSKNRKPLQRGRM-LSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRV 545

Query: 166 MKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSK 225
           + S   RLLK DM+AVL EL RQ E +LA+K+F  IRK+ WY P V +Y D+I  +A + 
Sbjct: 546 IISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNS 605

Query: 226 KMDDAMKLWESMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPF 277
            M++   L+ +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   F
Sbjct: 606 LMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASF 665

[Close]

BLAST of Lsi02G013280 vs. TAIR10
Match: AT5G12100.1 (AT5G12100.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 1


Query: 175 EVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 234
           +V   +++F  + K D   P VFIY  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 235 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 277
             +I G+ + G+P  +  V E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of Lsi02G013280 vs. TAIR10
Match: AT1G77340.1 (AT1G77340.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-10
Identity = 33/103 (32.04%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 172 RQEEVALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDS 231
           R++EV  A K+F+ + +   +  +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEVS-YTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 232 QTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK 275
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L++
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303

[Close]

BLAST of Lsi02G013280 vs. NCBI nr
Match: gi|449455076|ref|XP_004145279.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 3.8e-133
Identity = 236/255 (92.55%), Postives = 243/255 (95.29%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MAIRWFSRSKLPVFASVF++ LTRRPI D+PLP KSTIT  Q DS RP+W FRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           VALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Lsi02G013280 vs. NCBI nr
Match: gi|659115195|ref|XP_008457435.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo])

HSP 1 Score: 481.1 bits (1237), Expect = 1.5e-132
Identity = 235/255 (92.16%), Postives = 243/255 (95.29%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MAIRWFSRSKLP+FA VF+R LTRRPI D+PLP  STITG Q DSSRP+W FRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           VALAVKIFRLIRKQDWY PDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Lsi02G013280 vs. NCBI nr
Match: gi|1009114783|ref|XP_015873874.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Ziziphus jujuba])

HSP 1 Score: 394.0 bits (1011), Expect = 2.3e-106
Identity = 188/255 (73.73%), Postives = 217/255 (85.10%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           M +   +RSK+PV  S+ +R L R PI  + LP +S I   +T S +P+  FRLYHDGRP
Sbjct: 1   MVLHAITRSKIPVLTSIVLRLLYRAPIKQLSLPLRSNILAFETVSLKPIAGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEA+FVI GLKRFK+DEEKLEKF+K+HV RLLK+DMIAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEAIFVILGLKRFKDDEEKLEKFIKTHVTRLLKMDMIAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           V LA KIF LI+KQDWY PDV++YKDLIIALAR KKMD+ M+LWE MR+E+LFPDSQTYT
Sbjct: 121 VVLASKIFGLIQKQDWYKPDVYLYKDLIIALARRKKMDEVMQLWEKMRKEDLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           E+IRGFL  GSP DAMN+YEDMK SPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EIIRGFLSSGSPGDAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           ++HVYDPPEEIFG+R
Sbjct: 241 EKHVYDPPEEIFGIR 255

[Close]

BLAST of Lsi02G013280 vs. NCBI nr
Match: gi|595828842|ref|XP_007205757.1| (hypothetical protein PRUPE_ppa010266mg [Prunus persica])

HSP 1 Score: 392.9 bits (1008), Expect = 5.2e-106
Identity = 188/255 (73.73%), Postives = 219/255 (85.88%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MA R FSRSK  +F+S+ +R L R    + PL  K  I   + +SS+P+  FRLYHDGRP
Sbjct: 1   MATRAFSRSKFAIFSSILLRGLKRTTTQETPLLRKFRIPESEIESSKPICGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEAL+VI GLKRFK+DEEKL KF+K+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALYVISGLKRFKDDEEKLGKFIKNHVLRLLKMDLIAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           V LA+K+F +IRKQDWY PDV++YKDLII+LARSKKMDD M LW+ M++E+LFPDSQTYT
Sbjct: 121 VNLAIKVFNVIRKQDWYNPDVYLYKDLIISLARSKKMDDVMLLWDGMKKEDLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFL  GSP+DAMN+YEDMK SPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLSSGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           +QHVYDPPEEIFG+R
Sbjct: 241 EQHVYDPPEEIFGVR 255

[Close]

BLAST of Lsi02G013280 vs. NCBI nr
Match: gi|657987696|ref|XP_008386010.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Malus domestica])

HSP 1 Score: 392.9 bits (1008), Expect = 5.2e-106
Identity = 191/255 (74.90%), Postives = 219/255 (85.88%), Query Frame = 1


Query: 56  MAIRWFSRSKLPVFASVFVRCLTRRPISDIPLPAKSTITGLQTDSSRPLWVFRLYHDGRP 115
           MA R FSRSK   F+SV ++ L   PI   PL   STI  L+  S RP+  FRLYHDGRP
Sbjct: 1   MATRAFSRSKSSFFSSVLLQNLKTTPIKTTPLLLNSTIPELEIKSCRPISGFRLYHDGRP 60

Query: 116 RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 175
           RGPLWR +K IGKEALFVI GLKRFK++EEKL KF+K+HVLRLLK+DMIAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALFVISGLKRFKDNEEKLGKFVKTHVLRLLKMDMIAVLTELERQEE 120

Query: 176 VALAVKIFRLIRKQDWYTPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 235
           VALA+K+F +IR+QDWY PDV++YKDLIIALARSKKM+D M LW+ M++E+LFPDSQTYT
Sbjct: 121 VALAIKVFNVIRRQDWYKPDVYLYKDLIIALARSKKMEDVMLLWDIMKKEDLFPDSQTYT 180

Query: 236 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 295
           EVIRGFL  G P+DAMN+YEDMK+SPDPP+ELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLNSGCPADAMNIYEDMKQSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 296 DQHVYDPPEEIFGLR 311
           +QHVYDPPEEIFG+R
Sbjct: 241 EQHVYDPPEEIFGMR 255

The following BLAST results are available for this feature:

BLAST of Lsi02G013280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP266_ARATH	5.2e-98	70.08	Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN...	[more]
PPR89_ARATH	1.2e-46	46.41	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN...	[more]
PP376_ARATH	2.0e-09	36.27	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
PP424_ARATH	1.3e-08	27.95	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
PPR90_ARATH	2.3e-08	33.67	Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN...	[more]

BLAST of Lsi02G013280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE9_CUCSA	2.7e-133	92.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525290 PE=4 SV=1	[more]
M5W0S0_PRUPE	3.6e-106	73.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010266mg PE=4 SV=1	[more]
D7SK67_VITVI	4.8e-106	74.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05640 PE=4 SV=...	[more]
D7SJL5_VITVI	3.1e-105	73.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07800 PE=4 SV=...	[more]
A0A0B0MH77_GOSAR	1.9e-102	70.75	Uncharacterized protein OS=Gossypium arboreum GN=F383_18987 PE=4 SV=1	[more]

BLAST of Lsi02G013280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46870.1	2.9e-99	70.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	6.9e-48	46.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	1.1e-16	31.55	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G12100.1	1.1e-10	36.27	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G77340.1	3.3e-10	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Lsi02G013280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455076\|ref\|XP_004145279.1\|	3.8e-133	92.55	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis sativu...	[more]
gi\|659115195\|ref\|XP_008457435.1\|	1.5e-132	92.16	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo]	[more]
gi\|1009114783\|ref\|XP_015873874.1\|	2.3e-106	73.73	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Ziziphus jujub...	[more]
gi\|595828842\|ref\|XP_007205757.1\|	5.2e-106	73.73	hypothetical protein PRUPE_ppa010266mg [Prunus persica]	[more]
gi\|657987696\|ref\|XP_008386010.1\|	5.2e-106	74.90	PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Malus dom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G013280.1	Lsi02G013280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 194..242 score: 2.5
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 199..230 score: 5.1E-6coord: 233..260 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 230..264 score: 10.6coord: 195..229 score: 11
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 72..301 score: 2.4E
None	No IPR available	PANTHER	PTHR24015:SF332	SUBFAMILY NOT NAMED	coord: 72..301 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G013280	Csa1G525290	Cucumber (Chinese Long) v2	culsiB030
Lsi02G013280	CSPI01G23420	Wild cucumber (PI 183967)	cpilsiB031
Lsi02G013280	Cucsa.146590	Cucumber (Gy14) v1	cgylsiB233
Lsi02G013280	CmaCh13G001010	Cucurbita maxima (Rimu)	cmalsiB201
Lsi02G013280	CmoCh13G001010	Cucurbita moschata (Rifu)	cmolsiB191
Lsi02G013280	Cla008208	Watermelon (97103) v1	lsiwmB185
Lsi02G013280	MELO3C020598	Melon (DHL92) v3.5.1	lsimeB174
Lsi02G013280	ClCG03G001190	Watermelon (Charleston Gray)	lsiwcgB185
Lsi02G013280	MELO3C020598.2	Melon (DHL92) v3.6.1	lsimedB183
Lsi02G013280	Cla97C03G052040	Watermelon (97103) v2	lsiwmbB177
Lsi02G013280	Bhi08G000477	Wax gourd	lsiwgoB239
Lsi02G013280	Cp4.1LG20g08310	Cucurbita pepo (Zucchini)	cpelsiB422
Lsi02G013280	Cp4.1LG00g03640	Cucurbita pepo (Zucchini)	cpelsiB008
Lsi02G013280	CsGy1G022900	Cucumber (Gy14) v2	cgyblsiB027
Lsi02G013280	Carg20634	Silver-seed gourd	carlsiB349
Lsi02G013280	CsaV3_1G035710	Cucumber (Chinese Long) v3	cuclsiB031
Lsi02G013280	CsaV3_1G034610	Cucumber (Chinese Long) v3	cuclsiB040

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G013280	Silver-seed gourd	carlsiB140
Lsi02G013280	Silver-seed gourd	carlsiB403
Lsi02G013280	Silver-seed gourd	carlsiB913
Lsi02G013280	Cucumber (Chinese Long) v3	cuclsiB193
Lsi02G013280	Cucumber (Chinese Long) v3	cuclsiB376
Lsi02G013280	Watermelon (97103) v2	lsiwmbB164
Lsi02G013280	Bottle gourd (USVL1VR-Ls)	lsilsiB095
Lsi02G013280	Bottle gourd (USVL1VR-Ls)	lsilsiB104
Lsi02G013280	Cucumber (Gy14) v1	cgylsiB295
Lsi02G013280	Cucurbita maxima (Rimu)	cmalsiB235
Lsi02G013280	Cucurbita maxima (Rimu)	cmalsiB417
Lsi02G013280	Cucurbita maxima (Rimu)	cmalsiB750
Lsi02G013280	Cucurbita moschata (Rifu)	cmolsiB223
Lsi02G013280	Cucurbita moschata (Rifu)	cmolsiB403
Lsi02G013280	Cucurbita moschata (Rifu)	cmolsiB743
Lsi02G013280	Cucurbita pepo (Zucchini)	cpelsiB440
Lsi02G013280	Cucurbita pepo (Zucchini)	cpelsiB441
Lsi02G013280	Cucurbita pepo (Zucchini)	cpelsiB706
Lsi02G013280	Wild cucumber (PI 183967)	cpilsiB172
Lsi02G013280	Cucumber (Chinese Long) v2	culsiB173
Lsi02G013280	Melon (DHL92) v3.5.1	lsimeB215
Lsi02G013280	Watermelon (Charleston Gray)	lsiwcgB163
Lsi02G013280	Watermelon (97103) v1	lsiwmB179
Lsi02G013280	Cucumber (Gy14) v2	cgyblsiB162
Lsi02G013280	Melon (DHL92) v3.6.1	lsimedB227