CmoCh13G001010 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAATGCGGTGGTTTTCCAAGTTGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTCTCTTTTCCCTTCCTTTTCTTCATTATGTTCTGTCATTTTTTGGGTTTTTAACTTTACTTCATGAGGTGCCATGGAAATAGATAACGAGCTTCTGCAAAATATACTTAATATTCCTGACTTACTCTTGTTTGTTGTCACTATTACTTTCAATAACCTTGTTGGTTAATGCTTTGAATTTTTGCTTCTTAATTGTTATGTTCATCTCTGATCTGCCCCTTTTGATTCATCAGGGTCTTCTTCATATATATATATATGATTTAAGATCTTGTATATGAACCCTTTTCCAATCTAGTTGCTTGTGGAAAATATGTTGTGAGATCCCACCTCGGTTGGGGAGGAGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGAAATCTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAAAGGACAATATTTGCTAGGAGTGGGGTTGGGTTGGGTTGTTACAAATAATATCAAAGCTAGACATCGGGCAATGTGCCAACAAGGACGCTAGGACTTGAAGGGGGTTGACATGAGGCGGTGTGCTAGCTAGGACGTTGGGCCCCGAATGGGGGTGGATTGGAAGCTCCACATCGATTGGAGAAAGGAACAAGTGTCAGCGAGGACGCTGGGCCTCAAAGGGTGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAGGAGGATGTGCCAGCAAGGAGGCTGAGCCCTGAAGGGGGGTGGACATGAGGCGGTGTGTTAGCTAGGACGTTGGGCCCTGAATAGGGGTGGATTAGGGGTTCCACATCGATTGGAGAAAGGAACGAGTGCCAGCAAGGATGCTGGACCTCGAAGGGTGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAGGAGGATGTGCCAGCAAGGAGGCTGAGCCCTGAAGGGGGGTGGACATGAGGCGGTGTGTTAGCTAGGACGTTGGGCCCTGAATAGGGGTGGATTAGGGGTTCCACATCGATTGGAGAAAGGAACGAGTGCCAGCAAGGATGCTGGACCTCGAAGGGTGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGATGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGAAGCCCGAAAGGGAAAGCCCAAGGAGGATGTGCCAGCAAGGAGGCTGAGCCCTGAAGGGGGGTGGACATGAGGCGGTGTGTTAGCTAGGACGTTGGGCCCTGAATAGGGGTGGATTAGGGGTTCCACATCGATTGGAGAAAGGAACGAGTGCCAGCAAGGATGCTGGACCTCGAAGGGTGGTGGATTGTGAGATCTCACATCGGTTGGGGAGGAGAACGGAACATTTTTTATGAGGATGTGGAAACCTCTCCCTAGAAAACGCGTTTTAAAAACCTTGAGGGAAACCTAGAAGGAAAAGCCCAAAGAGGACAATATTTGCTAGCGATGGGTTTAGGCTATTACATATTTGCTTTTAGATTCTCTTACTTCATTGTTTTGGGGAATCTGACCTGCTGCAATTTTCTATTGTCATTATGTTTGCTCGCCTTGTACGCTTGTCGAACTTTCAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTCGAGGAGATCTTTCCTGACCAGCACGTGTACGATCCCCCGGAAGAGATATTCGGCCTACGCTGA ATGGCAATGCGGTGGTTTTCCAAGTTGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTCGAGGAGATCTTTCCTGACCAGCACGTGTACGATCCCCCGGAAGAGATATTCGGCCTACGCTGA ATGGCAATGCGGTGGTTTTCCAAGTTGAAGTTACCCATTTGTTATTCGGTATTCCTACGAGGTCTAATGAGGAGACCCATTAGAGATATCCCATTACCAGTAAAATCGACGGTTGCCGGATTTCAGCCGGATTCCAGCCGACCCTTAAGCGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAGCTCCAGAAGTTCATGAAATGTCATGTTTTGAGGCTCTTGAAATTGGACATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCCGTCAAGGTATTTCGGTTGATTCAAAAGCAAGAATGGTACAAGCCCGATGTTTTTCTCTACAAAGACTTGATTGTTGCATTAGCTAGAAGTAAACAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTATTCCCTGATTCTCAAACGTACACCGAAGTCATCAGAGGCTTCTTGAAATATGGATCTCCTTCTGATGCAATGAACATATATGAAGATATGAAGAAGTCTCCTGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTGAAGCAAGATTTCGAGGAGATCTTTCCTGACCAGCACGTGTACGATCCCCCGGAAGAGATATTCGGCCTACGCTGA
BLAST of CmoCh13G001010 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1) HSP 1 Score: 349.0 bits (894), Expect = 4.5e-95 Identity = 169/246 (68.70%), Postives = 200/246 (81.30%), Query Frame = 1
BLAST of CmoCh13G001010 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 5.5e-45 Identity = 80/181 (44.20%), Postives = 130/181 (71.82%), Query Frame = 1
BLAST of CmoCh13G001010 vs. Swiss-Prot
Match: PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2) HSP 1 Score: 65.5 bits (158), Expect = 9.8e-10 Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 1
BLAST of CmoCh13G001010 vs. Swiss-Prot
Match: PP376_ARATH (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.4e-09 Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = 1
BLAST of CmoCh13G001010 vs. Swiss-Prot
Match: RF1_ORYSI (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TrEMBL
Match: A0A0A0LVE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G525290 PE=4 SV=1) HSP 1 Score: 465.7 bits (1197), Expect = 3.6e-128 Identity = 221/255 (86.67%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TrEMBL
Match: M5W0S0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010266mg PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.8e-104 Identity = 187/255 (73.33%), Postives = 218/255 (85.49%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TrEMBL
Match: A0A0B0MH77_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_18987 PE=4 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 8.2e-104 Identity = 183/253 (72.33%), Postives = 217/253 (85.77%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TrEMBL
Match: D7SK67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05640 PE=4 SV=1) HSP 1 Score: 384.4 bits (986), Expect = 1.1e-103 Identity = 189/257 (73.54%), Postives = 223/257 (86.77%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TrEMBL
Match: D7SJL5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07800 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 1.4e-103 Identity = 187/254 (73.62%), Postives = 221/254 (87.01%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 349.0 bits (894), Expect = 2.5e-96 Identity = 169/246 (68.70%), Postives = 200/246 (81.30%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 182.6 bits (462), Expect = 3.1e-46 Identity = 80/181 (44.20%), Postives = 130/181 (71.82%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TAIR10
Match: AT5G09320.1 (AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain) HSP 1 Score: 80.5 bits (197), Expect = 1.7e-15 Identity = 58/177 (32.77%), Postives = 87/177 (49.15%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TAIR10
Match: AT5G48730.1 (AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 65.5 bits (158), Expect = 5.5e-11 Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 1
BLAST of CmoCh13G001010 vs. TAIR10
Match: AT5G12100.1 (AT5G12100.1 pentatricopeptide (PPR) repeat-containing protein) HSP 1 Score: 62.8 bits (151), Expect = 3.6e-10 Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = 1
BLAST of CmoCh13G001010 vs. NCBI nr
Match: gi|449455076|ref|XP_004145279.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis sativus]) HSP 1 Score: 465.7 bits (1197), Expect = 5.2e-128 Identity = 221/255 (86.67%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of CmoCh13G001010 vs. NCBI nr
Match: gi|659115195|ref|XP_008457435.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo]) HSP 1 Score: 465.7 bits (1197), Expect = 5.2e-128 Identity = 223/255 (87.45%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of CmoCh13G001010 vs. NCBI nr
Match: gi|1009114783|ref|XP_015873874.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Ziziphus jujuba]) HSP 1 Score: 394.4 bits (1012), Expect = 1.5e-106 Identity = 185/255 (72.55%), Postives = 220/255 (86.27%), Query Frame = 1
BLAST of CmoCh13G001010 vs. NCBI nr
Match: gi|657987696|ref|XP_008386010.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Malus domestica]) HSP 1 Score: 389.4 bits (999), Expect = 4.8e-105 Identity = 189/255 (74.12%), Postives = 219/255 (85.88%), Query Frame = 1
BLAST of CmoCh13G001010 vs. NCBI nr
Match: gi|595828842|ref|XP_007205757.1| (hypothetical protein PRUPE_ppa010266mg [Prunus persica]) HSP 1 Score: 386.3 bits (991), Expect = 4.0e-104 Identity = 187/255 (73.33%), Postives = 218/255 (85.49%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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