Cla97C03G052040 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G052040
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat
Location	Cla97Chr03 : 1088302 .. 1089815 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCGGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATCTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGGTTTGTTCCCCCTTCCTTTTCTTCTATATGTTCTGTCCTTTTTGTAGCTCTTTCTGGATCTTGACATACATTTTAGATTTTACTTCATGAGTCGTCTCAAATAGTTAATGGGCTTCTGTAAGTTGATGCTATGAGATTTTTTTCTTCTTAACTGTTATGTTATTGATTGTTATTTACTTTAGGTGAATAACTTTGCTAATGCTGCATTCAAGCTTCTATTCTGCTCTTGAATTTCTAAGATTATGTTTCTCAGCTTCTAGCTTTCTTAGTATGAATGTGATGTTCTTGACGTTTGCCCTGTCTCTTTTCATGGAGCTATTGTGCAATTTTTGTCAAGTTGCAGCTCTCCCTCTCTTTATGCATGGTAGTAATTGAAGCATGCTTAAGGAAGGTCATAGAGGAAGTAAATTCATGTATTGGTGTTCCTCTAAATGATATAATGAGTTGTTTTCCCACTTCCTCTTATATGTTAAGCTTGTTTTATGTCGAGGAAGTTGCCCTTGCATTCAAGATTCTTCCATATGAATACTGCTTGTTTCTCCCTTGTTCAACTCTGATCTGCCCCTTTGAGTGCTTATCATATCTAGTTCAAACTTTTTGTATGAATTAAGATCTCAAATATGAAATCTATTTCACTCTGGTTGCATGTGGGAACATTTGCCTTTTATATTCTTTTATTTTTCAACTCAAGATTGACTTGATTTTATTTCATGGTGTCTGTGAATCTTACACGTTGAATTTTCCAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCAGATTCTCAAACATATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGA

mRNA sequence

ATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCGGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATCTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCAGATTCTCAAACATATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGA

Coding sequence (CDS)

ATGGCAATTCGATGGTTTTCCGGGTCGAAATTGCCCATTTTTGCATCGGTATTCATACGATGTCTAATGAGGAGAGCAATTAGTGATATCTCATTACCAGTGAAATCGACTATTTCTGGAATTCAGCCGGATTTGAGCCGACCCTTATGGGGATTCCGGCTATATCACGACGGGAGGCCGCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGGAAAGAAGCGCTTTTCGTTATTCAGGGATTGAAGAGATTCAAGGAAGATGAAGAGAAACTCGAGAAGTTCATGAAGAGTCATGTATTGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTAGCTGTTAAGATATTTAGGTTGATTCGAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGATGCAATGAAATTATGGGAAAGCATGAGAGAGGAGAATTTATTTCCAGATTCTCAAACATATACCGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAATGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTTAGAATTTTGTTGAAAGGCCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAGGAGCTCTTTCCTGACCAGCATGTGTATGATCCCCCAGAAGAGATATTCGGCCTACGTTGA

Protein sequence

MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

Homology

[Close]

BLAST of Cla97C03G052040 vs. NCBI nr
Match: XP_008457435.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo])

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 234/255 (91.76%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFA VF+R L RR I D+ LPV STI+G QPD SRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Cla97C03G052040 vs. NCBI nr
Match: XP_004145279.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis sativus] >KGN65758.1 hypothetical protein Csa_1G525290 [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 2.8e-93
Identity = 232/255 (90.98%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLP+FASVF++ L RR I D+ LPVKSTI+  QPD  RP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Cla97C03G052040 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 1.1e-89
Identity = 227/255 (89.02%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS  KLPI  SVF+R LMRR I DI LPVKST++G QPD SRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MDDAM+LWESMR+E  XXXXXXXX
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKEXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEE+FP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Cla97C03G052040 vs. NCBI nr
Match: XP_023521051.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522412.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 226/255 (88.63%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS SKLPI  SVF+R L  R I DISLPVKST++G QPD S+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MD+AM+LWESMR+EN XXXXXXXX
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDEAMELWESMRKENXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEE+FP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Cla97C03G052040 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 4.2e-89
Identity = 226/255 (88.63%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA+RWFS SKLPI  SVF+R L  R I DISLPVKST++G QPD S+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL+KFMK HVLRLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVK+FRLI+KQ+WYKPDVF+YKDLI+ALARSK+MDDAM+LWESMR+E  XXXXXXXX
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKEXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEE+FP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Cla97C03G052040 vs. TrEMBL
Match: tr|A0A1S3C5H5|A0A1S3C5H5_CUCME (pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN=LOC103497124 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.4e-93
Identity = 234/255 (91.76%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLPIFA VF+R L RR I D+ LPV STI+G QPD SRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKL KFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Cla97C03G052040 vs. TrEMBL
Match: tr|A0A0A0LVE9|A0A0A0LVE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.8e-93
Identity = 232/255 (90.98%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MAIRWFS SKLP+FASVF++ L RR I D+ LPVKSTI+  QPD  RP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVKIFRLIRKQDWYKPDV++YKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Cla97C03G052040 vs. TrEMBL
Match: tr|A0A2P4ISK6|A0A2P4ISK6_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_34307 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 8.6e-75
Identity = 199/255 (78.04%), Postives = 226/255 (88.63%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA R FS  K PI  S+ IR L R AI   SLP+K  ++ ++PD  +P+ GF+LYHDGRP
Sbjct: 1   MATRAFSRLKTPICTSILIRNLTRTAIKHHSLPLKPKVAALEPDCCKPICGFKLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWR +K IGKEALFVI GLKRFK+DEEKLEKF+K+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALFVILGLKRFKDDEEKLEKFIKTHVLRLLKMDLIAVLSELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALAVK+F++IR+QDWY+PD F+YKDLIIALA+ +KMDDAM+LWE MR+EN XXXXXXXX
Sbjct: 121 VALAVKVFKVIRRQDWYRPDAFLYKDLIIALAKCQKMDDAMQLWEDMRKENXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PLLRNRVKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           ++HVYDPPEEIFGLR
Sbjct: 241 ERHVYDPPEEIFGLR 255

[Close]

BLAST of Cla97C03G052040 vs. TrEMBL
Match: tr|A0A2I4FFU6|A0A2I4FFU6_9ROSI (pentatricopeptide repeat-containing protein At3g46870 OS=Juglans regia OX=51240 GN=LOC108998427 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.8e-71
Identity = 200/253 (79.05%), Postives = 221/253 (87.35%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA R FS  K P FAS+ IR L    I + SLPVK  +    PD  +P   FRLYHDGRP
Sbjct: 1   MATRAFSRLKHPFFASILIRNLRIVPIREPSLPVKPEVLASVPDYCKP---FRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLWR +K IGKEALFVI GLKRFK+DEEKLEKFMK+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWRGKKLIGKEALFVILGLKRFKDDEEKLEKFMKTHVLRLLKMDIIAVLCELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
           VALA K+FR+I+KQDWYKPDV++YKDLIIALAR K+MDDAM+LWE MR+E+LXXXXXXXX
Sbjct: 121 VALAFKMFRVIQKQDWYKPDVYLYKDLIIALARRKQMDDAMQLWEDMRKEDLXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRN+VKQDFEELFP
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFG 254
           ++HVYDPPEEIFG
Sbjct: 241 ERHVYDPPEEIFG 250

[Close]

BLAST of Cla97C03G052040 vs. TrEMBL
Match: tr|A0A1U8PJZ9|A0A1U8PJZ9_GOSHI (pentatricopeptide repeat-containing protein At3g46870-like OS=Gossypium hirsutum OX=3635 GN=LOC107959151 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.9e-70
Identity = 138/253 (54.55%), Postives = 172/253 (67.98%), Query Frame = 0


Query: 1   MAIRWFSGSKLPIFASVFIRCLMRRAISDISLPVKSTISGIQPDLSRPLWGFRLYHDGRP 60
           MA R FS SK PI  S+ ++ L + +I+     VK  I  +QPD+ +P+ GF+LYHDGRP
Sbjct: 1   MATRAFSKSKFPILTSILLQNLTKNSITRSPFLVKPQIPPVQPDIHKPISGFKLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPLW+ +K IGKEALFVI GLKRFK+DE+K+ KF+K+HVLRLLK+D+IAVL ELERQEE
Sbjct: 61  RGPLWKGKKLIGKEALFVILGLKRFKDDEDKVLKFIKTHVLRLLKMDLIAVLSELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXX 180
            +LAVK+F +I+KQDWYKPDV++YKDLIIALA+ +KMD+AMKLWESMR+ENL        
Sbjct: 121 TSLAVKVFEVIQKQDWYKPDVYLYKDLIIALAKCRKMDEAMKLWESMRKENLFPDSQTYT 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFP 240
                                                      HPLLRN+VK+DFEELFP
Sbjct: 181 EIIRGFLRDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRNKVKKDFEELFP 240

Query: 241 DQHVYDPPEEIFG 254
           ++H YDPPEEIFG
Sbjct: 241 EKHAYDPPEEIFG 253

[Close]

BLAST of Cla97C03G052040 vs. Swiss-Prot
Match: sp|Q9STF9|THA8L_ARATH (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.1e-62
Identity = 128/249 (51.41%), Postives = 160/249 (64.26%), Query Frame = 0


Query: 10  KLPIFASVFIRCLMR----RAISDISLPVKSTISGIQPDLSRPLWGF-RLYHDGRPRGPL 69
           K P FAS+F + + R      IS  +L  K+ +  I P   +P   F   +HDGRPRGPL
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPP---KPFTVFVSRFHDGRPRGPL 69

Query: 70  WRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALA 129
           WR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQEE ALA
Sbjct: 70  WRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALA 129

Query: 130 VKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXXXXXX 189
           +K+F +I+KQ+WY+PDVFMYKDLI++LA+SK+MD+AM LWE M++ENL            
Sbjct: 130 IKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIR 189

Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFPDQHV 249
                                                  HPLLRN+VK+DFEELFP++H 
Sbjct: 190 GFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHA 249

Query: 250 YDPPEEIFG 254
           YDPPEEIFG
Sbjct: 250 YDPPEEIFG 255

[Close]

BLAST of Cla97C03G052040 vs. Swiss-Prot
Match: sp|Q1PFH7|PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 60/181 (33.15%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXXXXXXXXXXXX 190
           +R++ WY+PD+F Y+D+++ LAR+KK+D+  K+WE +++E +                  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFPDQHVYDPPEE 250
                                            +P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Cla97C03G052040 vs. Swiss-Prot
Match: sp|Q9LVW6|THA8_ARATH (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-06
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPL + R  +  EA+  IQ LKR       L   ++  + RL+K D+I+VL EL RQ+ 
Sbjct: 39  RGPLLKGR-ILSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDY 98

Query: 121 VALAVKIFRLIRKQDWYKP-DVFMYKDLIIALARSKKMDDAMKL 164
             LAV +   +R +  Y P D+ +Y D++ AL R+K+ D+  +L
Sbjct: 99  CTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRL 138

[Close]

BLAST of Cla97C03G052040 vs. TAIR10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 239.2 bits (609), Expect = 2.8e-63
Identity = 128/249 (51.41%), Postives = 160/249 (64.26%), Query Frame = 0


Query: 10  KLPIFASVFIRCLMR----RAISDISLPVKSTISGIQPDLSRPLWGF-RLYHDGRPRGPL 69
           K P FAS+F + + R      IS  +L  K+ +  I P   +P   F   +HDGRPRGPL
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPP---KPFTVFVSRFHDGRPRGPL 69

Query: 70  WRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALA 129
           WR +K IGKEALFVI GLKR KED+EKL+KF+K+HV RLLKLDM+AV+GELERQEE ALA
Sbjct: 70  WRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALA 129

Query: 130 VKIFRLIRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXXXXXX 189
           +K+F +I+KQ+WY+PDVFMYKDLI++LA+SK+MD+AM LWE M++ENL            
Sbjct: 130 IKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIR 189

Query: 190 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFPDQHV 249
                                                  HPLLRN+VK+DFEELFP++H 
Sbjct: 190 GFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHA 249

Query: 250 YDPPEEIFG 254
           YDPPEEIFG
Sbjct: 250 YDPPEEIFG 255

[Close]

BLAST of Cla97C03G052040 vs. TAIR10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 7.2e-27
Identity = 60/181 (33.15%), Postives = 96/181 (53.04%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    +L++F+ SHV RLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVFMYKDLIIALARSKKMDDAMKLWESMREENLXXXXXXXXXXXXXXXXXX 190
           +R++ WY+PD+F Y+D+++ LAR+KK+D+  K+WE +++E +                  
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPLLRNRVKQDFEELFPDQHVYDPPEE 250
                                            +P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Cla97C03G052040 vs. TAIR10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-12
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 92  LEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYKPDVFMYKDLIIAL 151
           L++ + S   RLLK DM+AVL EL RQ E +LA+K+F  IRK+ WYKP V MY D+I  +
Sbjct: 541 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVM 600

Query: 152 ARSKKMDDAMKLWESMREE 171
           A +  M++   L+ +M+ E
Sbjct: 601 ADNSLMEEVNYLYSAMKSE 619

[Close]

BLAST of Cla97C03G052040 vs. TAIR10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-07
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEE 120
           RGPL + R  +  EA+  IQ LKR       L   ++  + RL+K D+I+VL EL RQ+ 
Sbjct: 39  RGPLLKGR-ILSTEAIQSIQSLKRAHRTGVSLSLTLRP-LRRLIKSDLISVLRELLRQDY 98

Query: 121 VALAVKIFRLIRKQDWYKP-DVFMYKDLIIALARSKKMDDAMKL 164
             LAV +   +R +  Y P D+ +Y D++ AL R+K+ D+  +L
Sbjct: 99  CTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRL 138

[Close]

BLAST of Cla97C03G052040 vs. TAIR10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.8e-04
Identity = 29/94 (30.85%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 79  IQGLKRFKEDEEKLEKFMKSHVLRLLKLDMIAVLGELERQEEVALAVKIFRLIRKQDWYK 138
           ++G++R    E+ L  + K+         ++  L E  ++     A+KIF L+RKQ WY+
Sbjct: 91  VKGIERKANSEKYLTLWPKA---------VLEALDEAIKENRWQSALKIFNLLRKQHWYE 150

Query: 139 PDVFMYKDLIIALARSKKMDDAMKLWESMREENL 173
           P    Y  L   L   K+ D A  L+E M  E L
Sbjct: 151 PRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGL 175

The following BLAST results are available for this feature:

BLAST of Cla97C03G052040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457435.1	2.1e-93	91.76	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo]	[more]
XP_004145279.1	2.8e-93	90.98	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis sativu...	[more]
XP_022964699.1	1.1e-89	89.02	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964...	[more]
XP_023521051.1	1.9e-89	88.63	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita pepo subsp. pepo] >X...	[more]
XP_023519300.1	4.2e-89	88.63	protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs...	[more]

BLAST of Cla97C03G052040 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5H5\|A0A1S3C5H5_CUCME	1.4e-93	91.76	pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LVE9\|A0A0A0LVE9_CUCSA	1.8e-93	90.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]
tr\|A0A2P4ISK6\|A0A2P4ISK6_QUESU	8.6e-75	78.04	Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_3...	[more]
tr\|A0A2I4FFU6\|A0A2I4FFU6_9ROSI	9.8e-71	79.05	pentatricopeptide repeat-containing protein At3g46870 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A1U8PJZ9\|A0A1U8PJZ9_GOSHI	2.9e-70	54.55	pentatricopeptide repeat-containing protein At3g46870-like OS=Gossypium hirsutum...	[more]

BLAST of Cla97C03G052040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9STF9\|THA8L_ARATH	5.1e-62	51.41	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|Q1PFH7\|PPR89_ARATH	1.3e-25	33.15	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LVW6\|THA8_ARATH	5.1e-06	37.50	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]

BLAST of Cla97C03G052040 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46870.1	2.8e-63	51.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	7.2e-27	33.15	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	1.0e-12	46.84	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G27750.1	2.8e-07	37.50	FUNCTIONS IN: molecular_function unknown	[more]
AT3G53170.1	3.8e-04	30.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G052040.1	Cla97C03G052040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 2.2E-10 score: 40.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 178..205 e-value: 9.2E-5 score: 20.4 coord: 143..175 e-value: 3.6E-6 score: 24.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.159
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 69..255 e-value: 1.8E-53 score: 182.6
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..247
None	No IPR available	PANTHER	PTHR24015:SF332	SUBFAMILY NOT NAMED	coord: 1..247

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G052040	Cla008208	Watermelon (97103) v1	wmwmbB124
Cla97C03G052040	Csa1G525290	Cucumber (Chinese Long) v2	cuwmbB043
Cla97C03G052040	MELO3C020598	Melon (DHL92) v3.5.1	mewmbB153
Cla97C03G052040	ClCG03G001190	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G052040	CSPI01G23420	Wild cucumber (PI 183967)	cpiwmbB044
Cla97C03G052040	Cucsa.146590	Cucumber (Gy14) v1	cgywmbB246
Cla97C03G052040	CmaCh13G001010	Cucurbita maxima (Rimu)	cmawmbB225
Cla97C03G052040	CmoCh13G001010	Cucurbita moschata (Rifu)	cmowmbB209
Cla97C03G052040	Lsi02G013280	Bottle gourd (USVL1VR-Ls)	lsiwmbB177
Cla97C03G052040	CsGy1G022900	Cucumber (Gy14) v2	cgybwmbB042
Cla97C03G052040	MELO3C020598.2	Melon (DHL92) v3.6.1	medwmbB142
Cla97C03G052040	Carg20634	Silver-seed gourd	carwmbB0404
Cla97C03G052040	CsaV3_1G034610	Cucumber (Chinese Long) v3	cucwmbB049
Cla97C03G052040	CsaV3_1G035710	Cucumber (Chinese Long) v3	cucwmbB042
Cla97C03G052040	Bhi08G000477	Wax gourd	wgowmbB470

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G052040	Watermelon (97103) v2	wmbwmbB051
Cla97C03G052040	Watermelon (97103) v2	wmbwmbB121
Cla97C03G052040	Silver-seed gourd	carwmbB0467
Cla97C03G052040	Silver-seed gourd	carwmbB1053
Cla97C03G052040	Cucumber (Gy14) v2	cgybwmbB191
Cla97C03G052040	Cucumber (Gy14) v1	cgywmbB292
Cla97C03G052040	Cucumber (Gy14) v1	cgywmbB320
Cla97C03G052040	Cucurbita maxima (Rimu)	cmawmbB257
Cla97C03G052040	Cucurbita maxima (Rimu)	cmawmbB467
Cla97C03G052040	Cucurbita maxima (Rimu)	cmawmbB854
Cla97C03G052040	Cucurbita moschata (Rifu)	cmowmbB237
Cla97C03G052040	Cucurbita moschata (Rifu)	cmowmbB448
Cla97C03G052040	Cucurbita moschata (Rifu)	cmowmbB830
Cla97C03G052040	Wild cucumber (PI 183967)	cpiwmbB204
Cla97C03G052040	Wild cucumber (PI 183967)	cpiwmbB390
Cla97C03G052040	Cucumber (Chinese Long) v3	cucwmbB202
Cla97C03G052040	Cucumber (Chinese Long) v2	cuwmbB199
Cla97C03G052040	Cucumber (Chinese Long) v2	cuwmbB372
Cla97C03G052040	Melon (DHL92) v3.6.1	medwmbB316
Cla97C03G052040	Melon (DHL92) v3.5.1	mewmbB328
Cla97C03G052040	Watermelon (Charleston Gray)	wcgwmbB046
Cla97C03G052040	Watermelon (97103) v1	wmwmbB065