Lsi02G010880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G010880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_12
Location	chr02 : 12281607 .. 12282200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCTCTACCGGAAAAGAGGAACGGTCCACCCATCGCCGCCGATCATTTCCGACCACCTCTCGTTTCTCCCCACAGCCATCCTCACCCTCGCGGCGGCGCTCTCGCTGGAGGATCGAGAGGTTTTGGCCTACCTCATCTCCTCCTGCTCCAACGAATTCACCACCGTTAACAACTCCTCCAGCCACCGCAGCAAGGCGGCCCACCAGAAACCCACTACCGCCGCAAAAGGCGGTTCCGATCATCCCCCGGCGTTCTCCTGCGACTGTTTCCGGTGCTACACCAGCTACTGGGTCAGATGGGATTCCTCTCCGAATCGGCAACTGATACACGAAATAATCGACGCTTATGAAGAGAAATTGGCTGAAAGCAAATCCGGGAAGAACAATAAGAAAGAGAGGAAGAAGAAGAATAGCGGGTCGGTTTCCGGTCCGGGTGAGGGGAAAGGGTCGGAACCGGCGGCGAAGGAAGAAGAGTCGAGGGTGACGGAAAAGGAGACGGCGGAAAGCGGTGAGGAGGAGGCGGAGAAAGGGTCGGTAAGGAGGATTGTGAGTTTCATAGGGGAAAGAATCTGGGGAGGTTGGAATTAG

mRNA sequence

ATGAAGAAGCTCTACCGGAAAAGAGGAACGGTCCACCCATCGCCGCCGATCATTTCCGACCACCTCTCGTTTCTCCCCACAGCCATCCTCACCCTCGCGGCGGCGCTCTCGCTGGAGGATCGAGAGGTTTTGGCCTACCTCATCTCCTCCTGCTCCAACGAATTCACCACCGTTAACAACTCCTCCAGCCACCGCAGCAAGGCGGCCCACCAGAAACCCACTACCGCCGCAAAAGGCGGTTCCGATCATCCCCCGGCGTTCTCCTGCGACTGTTTCCGGTGCTACACCAGCTACTGGGTCAGATGGGATTCCTCTCCGAATCGGCAACTGATACACGAAATAATCGACGCTTATGAAGAGAAATTGGCTGAAAGCAAATCCGGGAAGAACAATAAGAAAGAGAGGAAGAAGAAGAATAGCGGGTCGGTTTCCGGTCCGGGTGAGGGGAAAGGGTCGGAACCGGCGGCGAAGGAAGAAGAGTCGAGGGTGACGGAAAAGGAGACGGCGGAAAGCGGTGAGGAGGAGGCGGAGAAAGGGTCGGTAAGGAGGATTGTGAGTTTCATAGGGGAAAGAATCTGGGGAGGTTGGAATTAG

Coding sequence (CDS)

ATGAAGAAGCTCTACCGGAAAAGAGGAACGGTCCACCCATCGCCGCCGATCATTTCCGACCACCTCTCGTTTCTCCCCACAGCCATCCTCACCCTCGCGGCGGCGCTCTCGCTGGAGGATCGAGAGGTTTTGGCCTACCTCATCTCCTCCTGCTCCAACGAATTCACCACCGTTAACAACTCCTCCAGCCACCGCAGCAAGGCGGCCCACCAGAAACCCACTACCGCCGCAAAAGGCGGTTCCGATCATCCCCCGGCGTTCTCCTGCGACTGTTTCCGGTGCTACACCAGCTACTGGGTCAGATGGGATTCCTCTCCGAATCGGCAACTGATACACGAAATAATCGACGCTTATGAAGAGAAATTGGCTGAAAGCAAATCCGGGAAGAACAATAAGAAAGAGAGGAAGAAGAAGAATAGCGGGTCGGTTTCCGGTCCGGGTGAGGGGAAAGGGTCGGAACCGGCGGCGAAGGAAGAAGAGTCGAGGGTGACGGAAAAGGAGACGGCGGAAAGCGGTGAGGAGGAGGCGGAGAAAGGGTCGGTAAGGAGGATTGTGAGTTTCATAGGGGAAAGAATCTGGGGAGGTTGGAATTAG

Protein sequence

MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNNSSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDAYEEKLAESKSGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEESRVTEKETAESGEEEAEKGSVRRIVSFIGERIWGGWN

Homology

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BLAST of Lsi02G010880 vs. TrEMBL
Match: A0A0A0LVV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G196260 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-81
Identity = 166/198 (83.84%), Postives = 173/198 (87.37%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRKRGTVHPSP IISDHLSFLPT ILTLAAALSL DREVLAYLISSCSN+FT V N
Sbjct: 124 MKKLYRKRGTVHPSPLIISDHLSFLPTVILTLAAALSLHDREVLAYLISSCSNDFTAVIN 183

Query: 61  SSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDAYEE 120
           SSSHR KA HQK   AA GG DHPPAFSC CF+CYTSYWVRWDSSPNRQLIHEIIDAYEE
Sbjct: 184 SSSHRGKATHQKHA-AAMGGLDHPPAFSCYCFQCYTSYWVRWDSSPNRQLIHEIIDAYEE 243

Query: 121 KLAESKSGKNNKKERKKKNS-GSVSGPGEGKGSEPAAKEEESRVTEKETAESGEEEAEKG 180
           KLAESK GKNNKKERKK+N+ G VSGPGEGKGSE A KEEE RVTE+E AE GEE AEKG
Sbjct: 244 KLAESKVGKNNKKERKKRNNRGPVSGPGEGKGSEAATKEEEWRVTEREVAEGGEEGAEKG 303

Query: 181 SVRRIVSFIGERIWGGWN 198
            VRRIVS +GE+IWG WN
Sbjct: 304 PVRRIVSLLGEKIWGSWN 320

[Close]

BLAST of Lsi02G010880 vs. TrEMBL
Match: A0A061GHH2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030338 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-49
Identity = 126/214 (58.88%), Postives = 148/214 (69.16%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYR RGTVHPSPPI +DHLSFLP  ILTLAAALS +DREVLAYLIS  +N+F    N
Sbjct: 1   MKKLYR-RGTVHPSPPITTDHLSFLPATILTLAAALSPDDREVLAYLISCSNNDF---GN 60

Query: 61  SSSHRSKAAHQKPTTAAKGGS---DHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDA 120
            SSHR K  H+ PT  +   S   DHPP F+CDCFRCY SYWVRWDSSPNRQLIHEIIDA
Sbjct: 61  FSSHR-KNTHKNPTKRSISSSSDHDHPPLFTCDCFRCYMSYWVRWDSSPNRQLIHEIIDA 120

Query: 121 YEEKLAESKSGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEES---RVTEKET------ 180
           +E+ LA+SK  K +KK+RKKK  G+  G G  K  E + ++++S   +  E+ T      
Sbjct: 121 FEDGLAQSKKAK-SKKDRKKKGGGA-DGSGGLKRPELSLRKDDSSELKSVEESTSSSSIG 180

Query: 181 ------AESGEEEAEKGSVRRIVSFIGERIWGGW 197
                 A+ GEE  EKGSVR  V+FIGERIW  W
Sbjct: 181 SSGEVCADDGEEGTEKGSVRSFVNFIGERIWNVW 207

[Close]

BLAST of Lsi02G010880 vs. TrEMBL
Match: A0A067GSU4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027822mg PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.6e-46
Identity = 118/224 (52.68%), Postives = 145/224 (64.73%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRK GTVHPSPPIISDHLSFLP AILTL AALS EDREVLAYLIS CSN  ++   
Sbjct: 1   MKKLYRK-GTVHPSPPIISDHLSFLPAAILTLTAALSSEDREVLAYLIS-CSNNNSSGGG 60

Query: 61  SSSHRSKA------------AHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNR 120
           SSS + +             A  + +TA    +DHPP F+CDCFRCY SYWV+WD+SPNR
Sbjct: 61  SSSFQGQRKSNQQKSGGVSLAKSRSSTAGNNNNDHPPLFTCDCFRCYMSYWVKWDASPNR 120

Query: 121 QLIHEIIDAYE--EKLAESKSGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEESRVTEK 180
           QLIHEIIDA+E  E    ++  KN+KK++KK+ SG+     + K ++   ++++    E 
Sbjct: 121 QLIHEIIDAFEDHEMSHNNRKVKNSKKDKKKRGSGT-----DHKKNDHQLQDQQLLAAES 180

Query: 181 ET-------------AESGEEEAEKGSVRRIVSFIGERIWGGWN 198
           E+                GEEE EKGSVR  VSFIGER WG W+
Sbjct: 181 ESFGENRDGNDHEDCNNKGEEEEEKGSVRSFVSFIGERFWGVWS 217

[Close]

BLAST of Lsi02G010880 vs. TrEMBL
Match: W9QUM1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013616 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-45
Identity = 125/224 (55.80%), Postives = 144/224 (64.29%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRK GTVHPSPPIISDHL+FLP  ILTL AALS EDREVLAYLIS  ++       
Sbjct: 1   MKKLYRK-GTVHPSPPIISDHLAFLPATILTLTAALSPEDREVLAYLISFSASNSPGGTT 60

Query: 61  SSSHRSKAAHQKPTTAAKGGS---------DHPPAFSCDCFRCYTSYWVRWDSSPNRQLI 120
           +SS R+ AA   P   AKGGS         DHPP F+CDCFRCYTSYWVRW SSPNR+LI
Sbjct: 61  ASSRRAAAA-VAPKGGAKGGSCSGSSSASGDHPPQFNCDCFRCYTSYWVRWGSSPNRELI 120

Query: 121 HEIIDAYEEKLAESK---SGKNNKKERKK-KNSGSVSGPGEGKGS-------------EP 180
           HEIIDA+E++L  S+   + K  K+ER+K +N G   G G   GS             EP
Sbjct: 121 HEIIDAFEDELLLSRTKGAAKTTKRERRKQRNGGGNIGNGVNTGSGELKRSELSSGKDEP 180

Query: 181 AAKEEESRVTEKETAESGEEE----AEKGSVRRIVSFIGERIWG 195
           A + E  +  E      G+EE    +EKGSVRR VSFIGERIWG
Sbjct: 181 AGESESVQGHEGGGGGEGDEEEVLSSEKGSVRRFVSFIGERIWG 222

[Close]

BLAST of Lsi02G010880 vs. TrEMBL
Match: U5GJP7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s00350g PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 119/226 (52.65%), Postives = 139/226 (61.50%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRK G VHPS P+ISDHLSFLP  IL L AALS EDREVLAYLIS   N     +N
Sbjct: 1   MKKLYRK-GKVHPSTPVISDHLSFLPVTILALTAALSPEDREVLAYLISCSGNNNIFYSN 60

Query: 61  SSS--HRSKAAHQKPTTAAKGGS-----DHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHE 120
            S+   R  + +QK T+  K  S     DHPP F+CDCFRCY SYW+RWDSSPNRQLIHE
Sbjct: 61  WSNINSRKSSCNQKTTSYTKSSSSSSSHDHPPMFNCDCFRCYMSYWIRWDSSPNRQLIHE 120

Query: 121 IIDAYEEKL-----AESKSGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEESRVTEKET 180
           IIDA+E+ L     + + SG  N+K+RK+K        G  +GS    K  E R+ +K+ 
Sbjct: 121 IIDAFEDWLLKQGKSSATSGNKNRKDRKRK--------GNSRGSGELIKRPELRMKDKQL 180

Query: 181 AES--------------------GEEEAEKGSVRRIVSFIGERIWG 195
            ES                    GEE  EKGSVRR+VSFIGERIWG
Sbjct: 181 DESDSLVDGNSSGSGGSEGVGGGGEEGTEKGSVRRLVSFIGERIWG 217

[Close]

BLAST of Lsi02G010880 vs. TAIR10
Match: AT1G62422.1 (AT1G62422.1 unknown protein)

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-36
Identity = 105/203 (51.72%), Postives = 127/203 (62.56%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPP--IISDH--LSFLPTAILTLAAALSLEDREVLAYLISSCSNEFT 60
           MKKL RK GTVHPSPP  I +D   LS LP AIL+L AALS+EDREVLAYLIS       
Sbjct: 1   MKKLCRK-GTVHPSPPPAIKTDEQFLSLLPVAILSLVAALSVEDREVLAYLIS------- 60

Query: 61  TVNNSSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIID 120
             N+  S+R     +      K  + H P F CDCF CYTSYWVRWD+SP RQLIHEIID
Sbjct: 61  --NSGDSNRISRLKKN-----KEDNHHSPLFLCDCFSCYTSYWVRWDTSPRRQLIHEIID 120

Query: 121 AYEEKLAESKSGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEE--SRVTEKETAESGEE 180
           AYE+ L E K  K ++++R  K SG V+  G  + SE  +   E     +EK+    GEE
Sbjct: 121 AYEDSL-EMKKKKKDRRKRSGKASGRVNSIGTSRLSELGSSSAEFAGGDSEKDGNCGGEE 180

Query: 181 -EAEKGSVRRIVSFIGERIWGGW 197
            E EKGSV +++SFIG+R  G W
Sbjct: 181 AEKEKGSVGKVMSFIGQRFLGVW 187

[Close]

BLAST of Lsi02G010880 vs. TAIR10
Match: AT1G12020.1 (AT1G12020.1 unknown protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 109/233 (46.78%), Postives = 135/233 (57.94%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPII--SDHL-SFLPTAILTLAAALSLEDREVLAYLISSCSNEFTT 60
           MKKLYRK GTVHPSPP I  +DHL + LP AI +LAA LS EDREVLAYLIS+ S  ++ 
Sbjct: 1   MKKLYRK-GTVHPSPPQIKSNDHLLTLLPVAIFSLAAVLSPEDREVLAYLISTAS--YSG 60

Query: 61  VNNSSSHRSKA-AHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIID 120
             N +S  +K  AH+K         +H P F CDCF CYTSYWVRWDSSP+RQLIHEIID
Sbjct: 61  ERNPTSRLNKTKAHKKALF-----DNHSPLFHCDCFSCYTSYWVRWDSSPSRQLIHEIID 120

Query: 121 AYEEKLAESKSGKNN---KKERKKKNSGS----VSGPGEGKGSEPAAKEEESRVTEKETA 180
           A+E+ L ++K+ K N   KK+R+K++  S     S       SE  ++  ES V      
Sbjct: 121 AFEDSLEKNKNKKKNVTGKKDRRKRSGKSSSLLASSSFSTDDSEIPSRLGESVVNSCPCT 180

Query: 181 ESGE--------------------------EEAEKGSVRRIVSFIGERIWGGW 197
            S E                           E EKG+VRR VSFIGE+++G W
Sbjct: 181 SSSELTQDGGGCSGGLEPMEFFCAGDACEKVEEEKGTVRRFVSFIGEKVFGVW 225

[Close]

BLAST of Lsi02G010880 vs. TAIR10
Match: AT5G13090.1 (AT5G13090.1 unknown protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-23
Identity = 65/153 (42.48%), Postives = 86/153 (56.21%), Query Frame = 1


Query: 6   RKRGTVHPSPP---------IISDHLS-----------FLPTAILTLAAALSLEDREVLA 65
           +K+G V+PSPP           S+HL+            LP  IL L + LS E+REVLA
Sbjct: 4   KKKGKVYPSPPPPPQSSSSSSSSNHLNEEDDDSLSVLKLLPATILVLVSVLSSEEREVLA 63

Query: 66  YLISSCSNEFTTVNNSSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSS 125
           YLI+  +      N+SS +++K    K +   K     PP F C+CF CYT+YW RWDSS
Sbjct: 64  YLITRGTTISDRGNSSSKNKTKKKSNKSSKNHK-----PPVFDCECFDCYTNYWFRWDSS 123

Query: 126 PNRQLIHEIIDAYEEKLAESKSGKNNKKERKKK 139
           PNR+LIHEII+A+E    E  S   +K +R KK
Sbjct: 124 PNRELIHEIIEAFENHHGEENSASRSKSKRGKK 151

[Close]

BLAST of Lsi02G010880 vs. TAIR10
Match: AT1G24270.1 (AT1G24270.1 unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-19
Identity = 62/146 (42.47%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 7   KRGTVHPSPPIIS-------DHLS---FLPTAILTLAAALSLEDREVLAYLISSCSNEFT 66
           K+G VHPSPP+ S       D LS    L +AIL L + LS ED EVLAYLI+   N   
Sbjct: 59  KKGKVHPSPPLPSSSSSNGDDSLSVFKLLQSAILVLVSVLSAEDLEVLAYLITRSLN--- 118

Query: 67  TVNNSSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIID 126
              N  S + K +H+ P               C CF CYTSYW +WDSS NR+LI++II+
Sbjct: 119 -TTNVVSCKKKRSHKAPL------------LDCQCFDCYTSYWSKWDSSSNRELINQIIE 178

Query: 127 AYE-----EKLAESKSGKNNKKERKK 138
           A+E     ++++ S + K NKK  KK
Sbjct: 179 AFEDHLTRDEISASHTSKKNKKRAKK 188

[Close]

BLAST of Lsi02G010880 vs. NCBI nr
Match: gi|449465415|ref|XP_004150423.1| (PREDICTED: uncharacterized protein LOC101221021 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 2.8e-81
Identity = 166/198 (83.84%), Postives = 173/198 (87.37%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRKRGTVHPSP IISDHLSFLPT ILTLAAALSL DREVLAYLISSCSN+FT V N
Sbjct: 1   MKKLYRKRGTVHPSPLIISDHLSFLPTVILTLAAALSLHDREVLAYLISSCSNDFTAVIN 60

Query: 61  SSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDAYEE 120
           SSSHR KA HQK   AA GG DHPPAFSC CF+CYTSYWVRWDSSPNRQLIHEIIDAYEE
Sbjct: 61  SSSHRGKATHQKHA-AAMGGLDHPPAFSCYCFQCYTSYWVRWDSSPNRQLIHEIIDAYEE 120

Query: 121 KLAESKSGKNNKKERKKKNS-GSVSGPGEGKGSEPAAKEEESRVTEKETAESGEEEAEKG 180
           KLAESK GKNNKKERKK+N+ G VSGPGEGKGSE A KEEE RVTE+E AE GEE AEKG
Sbjct: 121 KLAESKVGKNNKKERKKRNNRGPVSGPGEGKGSEAATKEEEWRVTEREVAEGGEEGAEKG 180

Query: 181 SVRRIVSFIGERIWGGWN 198
            VRRIVS +GE+IWG WN
Sbjct: 181 PVRRIVSLLGEKIWGSWN 197

[Close]

BLAST of Lsi02G010880 vs. NCBI nr
Match: gi|700209988|gb|KGN65084.1| (hypothetical protein Csa_1G196260 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 2.8e-81
Identity = 166/198 (83.84%), Postives = 173/198 (87.37%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRKRGTVHPSP IISDHLSFLPT ILTLAAALSL DREVLAYLISSCSN+FT V N
Sbjct: 124 MKKLYRKRGTVHPSPLIISDHLSFLPTVILTLAAALSLHDREVLAYLISSCSNDFTAVIN 183

Query: 61  SSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDAYEE 120
           SSSHR KA HQK   AA GG DHPPAFSC CF+CYTSYWVRWDSSPNRQLIHEIIDAYEE
Sbjct: 184 SSSHRGKATHQKHA-AAMGGLDHPPAFSCYCFQCYTSYWVRWDSSPNRQLIHEIIDAYEE 243

Query: 121 KLAESKSGKNNKKERKKKNS-GSVSGPGEGKGSEPAAKEEESRVTEKETAESGEEEAEKG 180
           KLAESK GKNNKKERKK+N+ G VSGPGEGKGSE A KEEE RVTE+E AE GEE AEKG
Sbjct: 244 KLAESKVGKNNKKERKKRNNRGPVSGPGEGKGSEAATKEEEWRVTEREVAEGGEEGAEKG 303

Query: 181 SVRRIVSFIGERIWGGWN 198
            VRRIVS +GE+IWG WN
Sbjct: 304 PVRRIVSLLGEKIWGSWN 320

[Close]

BLAST of Lsi02G010880 vs. NCBI nr
Match: gi|659118162|ref|XP_008458978.1| (PREDICTED: uncharacterized protein LOC103498228 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 3.2e-77
Identity = 157/198 (79.29%), Postives = 173/198 (87.37%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRK GTVHPSPP+ISDHLSFLPTAILTL++ALSL+DREVLAYLISSCSN+FT V+N
Sbjct: 1   MKKLYRKTGTVHPSPPLISDHLSFLPTAILTLSSALSLQDREVLAYLISSCSNDFTPVHN 60

Query: 61  SSSHRSKAAHQKPTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQLIHEIIDAYEE 120
           SS+HR KAAH K   A   GSDHPPAFSC CF+CYTSYWVRWDSSPNRQLIHEIIDAYE+
Sbjct: 61  SSTHRGKAAHHK-HAAPMAGSDHPPAFSCYCFQCYTSYWVRWDSSPNRQLIHEIIDAYED 120

Query: 121 KLAESKSGKNNKKERKKKN-SGSVSGPGEGKGSEPAAKEEESRVTEKETAESGEEEAEKG 180
           KLAE+K GKNNKKERKK+N SG+VSGPGEGKG+E AAK EE +VT     E GEEEAEKG
Sbjct: 121 KLAETKVGKNNKKERKKRNSSGTVSGPGEGKGAEAAAKVEEWKVT-----EGGEEEAEKG 180

Query: 181 SVRRIVSFIGERIWGGWN 198
            VRRIVS +GE+IWG WN
Sbjct: 181 PVRRIVSLLGEKIWGSWN 192

[Close]

BLAST of Lsi02G010880 vs. NCBI nr
Match: gi|1009107203|ref|XP_015878402.1| (PREDICTED: uncharacterized protein LOC107414739 [Ziziphus jujuba])

HSP 1 Score: 209.5 bits (532), Expect = 5.2e-51
Identity = 134/221 (60.63%), Postives = 157/221 (71.04%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYRK GTVHPSPPIISDHLSFLP AILTL  ALS EDREVLAYLIS CSN    VN+
Sbjct: 1   MKKLYRK-GTVHPSPPIISDHLSFLPAAILTLTVALSPEDREVLAYLIS-CSNS-AGVNS 60

Query: 61  SSSHRSKAAHQK----------PTTAAKGGSDHPPAFSCDCFRCYTSYWVRWDSSPNRQL 120
           SSS + +   +            ++++ GG DHPP F+C+CFRCYTS+WVRWDSSPNRQL
Sbjct: 61  SSSGQRRTTQRSCGKGGVAGATSSSSSGGGGDHPPQFNCNCFRCYTSFWVRWDSSPNRQL 120

Query: 121 IHEIIDAYEE-KLAESKSGK--NNKKERKKK---NSGSVSGPGEGKGSE-PAAKEE--ES 180
           IHEIIDA+E+  LA+SK  K  NN+KER+K+     G  +G GE K SE  + K+E  ES
Sbjct: 121 IHEIIDAFEDGLLAQSKGAKNNNNRKERRKRGGGGGGGNNGSGELKRSELSSGKDELVES 180

Query: 181 RVTEKETAES-----GEEEAEKGSVRRIVSFIGERIWGGWN 198
               +ET+       G+EEAEKGSVRR VSFIGERIWG WN
Sbjct: 181 ESVVEETSSGGGDGVGDEEAEKGSVRRFVSFIGERIWGVWN 218

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BLAST of Lsi02G010880 vs. NCBI nr
Match: gi|657958961|ref|XP_008371025.1| (PREDICTED: uncharacterized protein LOC103434446 [Malus domestica])

HSP 1 Score: 202.6 bits (514), Expect = 6.4e-49
Identity = 129/223 (57.85%), Postives = 156/223 (69.96%), Query Frame = 1


Query: 1   MKKLYRKRGTVHPSPPIISDHLSFLPTAILTLAAALSLEDREVLAYLISSCSNEFTTVNN 60
           MKKLYR RGTVHPSPPIISDHL+FLP  ILTLA+ALS EDREVLAYLIS CSN    +++
Sbjct: 1   MKKLYR-RGTVHPSPPIISDHLAFLPATILTLASALSPEDREVLAYLIS-CSNSSVNLSS 60

Query: 61  SSSH-----RSKAAHQKPTTAAKG-------GSDHPPAFSCDCFRCYTSYWVRWDSSPNR 120
           SSS+     ++  A  K T AAKG       G DHP  F+C+CFRCYTSYWVRWD SPNR
Sbjct: 61  SSSYAAPRKKTTTAASKKTAAAKGVIGGGGVGGDHPARFNCNCFRCYTSYWVRWDESPNR 120

Query: 121 QLIHEIIDAYE-EKLAESK--SGKNNKKERKKKNSGSVSGPGEGKGSEPAAKEEE---SR 180
           QLIHEIIDA+E E L ESK  S K+++KER+ K+  + +G GE K SE + K++E   S 
Sbjct: 121 QLIHEIIDAFEDELLTESKGFSSKSSRKERRNKSRVN-NGSGELKRSELSVKKKELAQSH 180

Query: 181 VTEKETAESG--------EEEAEKGSVRRIVSFIGERIWGGWN 198
             ++E    G        EE++EKGSVRR V F+GERIWG W+
Sbjct: 181 TADQEAGGGGGGGGGEVDEEDSEKGSVRRFVGFLGERIWGVWS 220

The following BLAST results are available for this feature:

BLAST of Lsi02G010880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G010880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVV3_CUCSA	2.0e-81	83.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G196260 PE=4 SV=1	[more]
A0A061GHH2_THECC	5.8e-49	58.88	Uncharacterized protein OS=Theobroma cacao GN=TCM_030338 PE=4 SV=1	[more]
A0A067GSU4_CITSI	4.6e-46	52.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027822mg PE=4 SV=1	[more]
W9QUM1_9ROSA	1.7e-45	55.80	Uncharacterized protein OS=Morus notabilis GN=L484_013616 PE=4 SV=1	[more]
U5GJP7_POPTR	1.1e-44	52.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s00350g PE=4 SV=1	[more]

BLAST of Lsi02G010880 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62422.1	8.6e-36	51.72	unknown protein	[more]
AT1G12020.1	2.5e-35	46.78	unknown protein	[more]
AT5G13090.1	1.3e-23	42.48	unknown protein	[more]
AT1G24270.1	3.3e-19	42.47	unknown protein	[more]

BLAST of Lsi02G010880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465415\|ref\|XP_004150423.1\|	2.8e-81	83.84	PREDICTED: uncharacterized protein LOC101221021 [Cucumis sativus]	[more]
gi\|700209988\|gb\|KGN65084.1\|	2.8e-81	83.84	hypothetical protein Csa_1G196260 [Cucumis sativus]	[more]
gi\|659118162\|ref\|XP_008458978.1\|	3.2e-77	79.29	PREDICTED: uncharacterized protein LOC103498228 [Cucumis melo]	[more]
gi\|1009107203\|ref\|XP_015878402.1\|	5.2e-51	60.63	PREDICTED: uncharacterized protein LOC107414739 [Ziziphus jujuba]	[more]
gi\|657958961\|ref\|XP_008371025.1\|	6.4e-49	57.85	PREDICTED: uncharacterized protein LOC103434446 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G010880.1	Lsi02G010880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 115..135 scor
None	No IPR available	PANTHER	PTHR31903	FAMILY NOT NAMED	coord: 1..196 score: 5.0
None	No IPR available	PANTHER	PTHR31903:SF5	SUBFAMILY NOT NAMED	coord: 1..196 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G010880	Csa1G196260	Cucumber (Chinese Long) v2	culsiB032
Lsi02G010880	CSPI06G33130	Wild cucumber (PI 183967)	cpilsiB447
Lsi02G010880	CSPI01G16230	Wild cucumber (PI 183967)	cpilsiB033
Lsi02G010880	Cucsa.044840	Cucumber (Gy14) v1	cgylsiB024
Lsi02G010880	CmaCh13G004070	Cucurbita maxima (Rimu)	cmalsiB207
Lsi02G010880	CmoCh18G005650	Cucurbita moschata (Rifu)	cmolsiB356
Lsi02G010880	CmoCh13G004310	Cucurbita moschata (Rifu)	cmolsiB197
Lsi02G010880	Cla008974	Watermelon (97103) v1	lsiwmB201
Lsi02G010880	MELO3C007428	Melon (DHL92) v3.5.1	lsimeB227
Lsi02G010880	MELO3C021703	Melon (DHL92) v3.5.1	lsimeB180
Lsi02G010880	ClCG01G021560	Watermelon (Charleston Gray)	lsiwcgB175
Lsi02G010880	ClCG01G009950	Watermelon (Charleston Gray)	lsiwcgB169
Lsi02G010880	MELO3C021703.2	Melon (DHL92) v3.6.1	lsimedB190
Lsi02G010880	MELO3C007428.2	Melon (DHL92) v3.6.1	lsimedB238
Lsi02G010880	Cla97C01G010060	Watermelon (97103) v2	lsiwmbB153
Lsi02G010880	Cla97C01G021130	Watermelon (97103) v2	lsiwmbB160
Lsi02G010880	Bhi08G000667	Wax gourd	lsiwgoB245
Lsi02G010880	Bhi03G000486	Wax gourd	lsiwgoB233
Lsi02G010880	Cp4.1LG20g06400	Cucurbita pepo (Zucchini)	cpelsiB417
Lsi02G010880	Cp4.1LG02g09480	Cucurbita pepo (Zucchini)	cpelsiB449
Lsi02G010880	CsGy6G032710	Cucumber (Gy14) v2	cgyblsiB407
Lsi02G010880	CsGy1G015820	Cucumber (Gy14) v2	cgyblsiB029
Lsi02G010880	Carg25135	Silver-seed gourd	carlsiB949
Lsi02G010880	CsaV3_6G048580	Cucumber (Chinese Long) v3	cuclsiB470
Lsi02G010880	CsaV3_1G018460	Cucumber (Chinese Long) v3	cuclsiB033

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi02G010880	Lsi01G004690	Bottle gourd (USVL1VR-Ls)	lsilsiB064

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G010880	Wax gourd	lsiwgoB255
Lsi02G010880	Cucurbita maxima (Rimu)	cmalsiB369
Lsi02G010880	Cucurbita maxima (Rimu)	cmalsiB375