Lsi02G001740 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CATTAATTCATTTTTGAAGAAGAAGCATAGCCTTATGATGAGAAAAAGAATAATGGCTTTCTGGTTTAATAAAGGATGCCTTCTTTTTCTCCATACGAAAAAGAGAATGAAAAAGAGAAACAAAGCCAAGAAGCCAAGAATAATGAACAGCCTACAAACCACAATGCAGAATCAGGTTCCAAGTATTAATATTAACAATATTATTATTATTATTAAGTGTCTTAATATTCTCTCACCAATCAATACCATCGTTAAACCCAGATTTTTCAAGTCCATCCCTTTCAAGTTCTGTGAAAGAACCCATAGTTTTTCTCTCTGTTACTGTGTATAAGCATCATATTGGTTTAGATTATTGGAGAAAGGTTCTGTTTTTGACATAGAATTAATGACAGGAAAGGCAAGTTCAATCTCACCAACTCTCCATTCTTCTTCTCCTTCCAAGCTTCATTGGCATTATTGAACTGTTTTCCCTTGACAACTATGGCAGTTTTGCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGAGCTATTCTCAGTATAAAAGGTGAAATCTCTCTCTTTCTTTGTTTCTTTTTCTCTAGAGAAATTATTCAAGGGGGCTAAAACAATATGGCTGACTCTTTCAAACCATTCAAAGTAAGAGAAAAATTAAACACTGTTTGACTATGCAAGTAATGATCTTAACAATATTTTTTAAACCTCAAGGCGCAATAAAAGTGCAATAGTCTTTTGGAGTTTAAGCGCAGGTGGAAAAAAAAATGTGTGAACTTCTTTTTTTGTGAGGTGCACTACATAAAGGAAAGAAAACATCATTTTTTTTTTTTTTGGATATATGTGAGTGTCCGGGTCAGTTTATCCGCACCTTGACTAATCCCACGAGACAACTCGCCTAACCCTACAACATTTTGGTATCAAGAAAACCATAAGATATTAAATCCTAGATAGGTGGCTGCCATGGATTGAACCCATGATCCTTAACCCTTTAGCCTTTTTTTATGTTCCCACTACCACTAGGCTAACCCATAATGGTTAAGAGAAAGCATAGTTGAAATGGAAAATGAAAAGAAAAGACCCCTAAACACAAGAAATTTTGTATTTAGGCTTAATAAATTTGATTTTATTAGTTAATAAAGAAGAAAAACTCCTAATTATTTCTATTTTTTAGATATAATGAAAAAGCCCTAAGGCCCAGGGCTTTGAGCTTTAGAGCTTCACAAAAGGTGTGCGCCTTATTTTGTAAGTCTCGCCTTTTTAAGGCGAGGCAGTAGGTCTGTACCTTGAGCCTAGGCACGCGCCTGGGAGAGCTATTTAAAACACTCGTTAGAATTTGGAAGAGTACAACCACGTTGTGGAAGTCAGATTAAACAATTTCCTATCTCTCTATCTCTCTCCTTTTGTTCTGAACTAGACTTAGACTGTTCAATTGATTCTACTTAGTAACTTTTGACATGCAAGTCCTTGTCATCTTGATAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGAAAGTTTAACCCTCAGGATATAGCAATCAAAATAAGGAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCACTGAAAACAATGATATCCAAGGACCCTTGATCATCAATGCCTGGAAATGCCAATCCAACTATGACCAAGTTGAAACTTTTTGTAAGCATGAAGGTGACACAGAAGAAAAGGAAGAATTAGCTTCTTCTATAACATAA CATTAATTCATTTTTGAAGAAGAAGCATAGCCTTATGATGAGAAAAAGAATAATGGCTTTCTGGTTTAATAAAGGATGCCTTCTTTTTCTCCATACGAAAAAGAGAATGAAAAAGAGAAACAAAGCCAAGAAGCCAAGAATAATGAACAGCCTACAAACCACAATGCAGAATCAGGAAAGGCAAGTTCAATCTCACCAACTCTCCATTCTTCTTCTCCTTCCAAGCTTCATTGGCATTATTGAACTGTTTTCCCTTGACAACTATGGCAGTTTTGCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGAGCTATTCTCAGTATAAAAGTAACTTTTGACATGCAAGTCCTTGTCATCTTGATAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGAAAGTTTAACCCTCAGGATATAGCAATCAAAATAAGGAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCACTGAAAACAATGATATCCAAGGACCCTTGATCATCAATGCCTGGAAATGCCAATCCAACTATGACCAAGTTGAAACTTTTTGTAAGCATGAAGGTGACACAGAAGAAAAGGAAGAATTAGCTTCTTCTATAACATAA ATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGAGCTATTCTCAGTATAAAAGTAACTTTTGACATGCAAGTCCTTGTCATCTTGATAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGAAAGTTTAACCCTCAGGATATAGCAATCAAAATAAGGAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCACTGAAAACAATGATATCCAAGGACCCTTGATCATCAATGCCTGGAAATGCCAATCCAACTATGACCAAGTTGAAACTTTTTGTAAGCATGAAGGTGACACAGAAGAAAAGGAAGAATTAGCTTCTTCTATAACATAA MVLRIHMDCNGCYRKVRRAILSIKVTFDMQVLVILIELETHLIEQKQCRVSVCGKFNPQDIAIKIRKKTNRRVEILEIQECDTFTENNDIQGPLIINAWKCQSNYDQVETFCKHEGDTEEKEELASSIT
BLAST of Lsi02G001740 vs. TrEMBL
Match: A0A0A0LSZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042260 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 6.7e-54 Identity = 109/129 (84.50%), Postives = 113/129 (87.60%), Query Frame = 1
BLAST of Lsi02G001740 vs. TrEMBL
Match: A0A0B0MSQ4_GOSAR (Zinc finger protein OS=Gossypium arboreum GN=F383_25478 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27 Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
BLAST of Lsi02G001740 vs. TrEMBL
Match: A0A0D2RZ60_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G195000 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27 Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
BLAST of Lsi02G001740 vs. TrEMBL
Match: A0A061FUS4_THECC (Copper transport protein family OS=Theobroma cacao GN=TCM_012322 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25 Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 1
BLAST of Lsi02G001740 vs. TrEMBL
Match: D7SIY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03840 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.2e-25 Identity = 66/111 (59.46%), Postives = 82/111 (73.87%), Query Frame = 1
BLAST of Lsi02G001740 vs. TAIR10
Match: AT3G25855.1 (AT3G25855.1 Copper transport protein family) HSP 1 Score: 77.4 bits (189), Expect = 7.1e-15 Identity = 34/80 (42.50%), Postives = 57/80 (71.25%), Query Frame = 1
BLAST of Lsi02G001740 vs. NCBI nr
Match: gi|778657232|ref|XP_011650508.1| (PREDICTED: uncharacterized protein LOC101212620 [Cucumis sativus]) HSP 1 Score: 218.0 bits (554), Expect = 9.6e-54 Identity = 109/129 (84.50%), Postives = 113/129 (87.60%), Query Frame = 1
BLAST of Lsi02G001740 vs. NCBI nr
Match: gi|659066710|ref|XP_008457410.1| (PREDICTED: uncharacterized protein LOC103497018 isoform X2 [Cucumis melo]) HSP 1 Score: 218.0 bits (554), Expect = 9.6e-54 Identity = 108/129 (83.72%), Postives = 113/129 (87.60%), Query Frame = 1
BLAST of Lsi02G001740 vs. NCBI nr
Match: gi|659066708|ref|XP_008457333.1| (PREDICTED: uncharacterized protein LOC103497018 isoform X1 [Cucumis melo]) HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35 Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
BLAST of Lsi02G001740 vs. NCBI nr
Match: gi|823176445|ref|XP_012486450.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26-like isoform X2 [Gossypium raimondii]) HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26 Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
BLAST of Lsi02G001740 vs. NCBI nr
Match: gi|823176442|ref|XP_012486449.1| (PREDICTED: uncharacterized protein LOC105800088 isoform X1 [Gossypium raimondii]) HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26 Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |