CsGy1G006430 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G006430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	heavy metal-associated isoprenylated plant protein 25-like
Location	Chr1 : 4181862 .. 4182526 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTTTCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGGGCTATTCTCAGTATAAAAGGTGAAATCTCTTTCTTTCTCTGTTTCATTCTCTATAGAGAAATTATTTAAGGGGGCTGCTAAAACAATATGGCTGACTATTTCAAACCATTCAAAATCAGAGAGTAATTAAATTCTATTTTTTTACCATGAAACTAATGGTTAGAGTTTAGAAAAAGACAGTCATATTGAGGAAGTCAGAATAAATAATTTCGCATCTCTGTCTCTCTCAATCCTTTAGTTTTGAGTTAGACTTGCTCTCTTCAATTGATTCTACTTGGTAACCTGTGACATGTAACTTCTTGTCACCTTGATAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAA

mRNA sequence

ATGGCAGTTTTTCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAA

Coding sequence (CDS)

ATGGCAGTTTTTCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAA

Protein sequence

MAVFLHGFENSHGLQWMLQEKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT

Homology

[Close]

BLAST of CsGy1G006430 vs. NCBI nr
Match: XP_011650508.1 (PREDICTED: uncharacterized protein LOC101212620 [Cucumis sativus] >KGN64114.1 hypothetical protein Csa_1G042260 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 6.6e-47
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI
Sbjct: 31  KELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT
Sbjct: 91  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 124

[Close]

BLAST of CsGy1G006430 vs. NCBI nr
Match: XP_008457333.1 (PREDICTED: uncharacterized protein LOC103497018 isoform X1 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 7.3e-46
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 3   VFLHGFENSHGLQWMLQEKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEI 62
           VFLHGFENS+GLQWMLQE  +++    +  RVSVCGKFSPQDIAIKIRKKTNRRVEILE+
Sbjct: 22  VFLHGFENSYGLQWMLQESKKSY---SQYKRVSVCGKFSPQDIAIKIRKKTNRRVEILEV 81

Query: 63  QECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           QECDTFNENN IQGPLIINAWKCQSNYDQVETCC HEGDTKEQ++LAS IT
Sbjct: 82  QECDTFNENNDIQGPLIINAWKCQSNYDQVETCCTHEGDTKEQQELASSIT 129

[Close]

BLAST of CsGy1G006430 vs. NCBI nr
Match: XP_008457410.1 (PREDICTED: uncharacterized protein LOC103497018 isoform X2 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 5.8e-43
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIEQK CRVSVCGKFSPQDIAIKIRKKTNRRVEILE+QECDTFNENN IQGPLI
Sbjct: 31  KELETHLIEQKHCRVSVCGKFSPQDIAIKIRKKTNRRVEILEVQECDTFNENNDIQGPLI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           INAWKCQSNYDQVETCC HEGDTKEQ++LAS IT
Sbjct: 91  INAWKCQSNYDQVETCCTHEGDTKEQQELASSIT 124

[Close]

BLAST of CsGy1G006430 vs. NCBI nr
Match: XP_022924036.1 (heavy metal-associated isoprenylated plant protein 7-like [Cucurbita moschata] >XP_023000671.1 heavy metal-associated isoprenylated plant protein 7-like [Cucurbita maxima] >XP_023519794.1 heavy metal-associated isoprenylated plant protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-39
Identity = 80/94 (85.11%), Postives = 86/94 (91.49%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LE HLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTF ENN IQGP I
Sbjct: 31  KELEDHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFTENNDIQGPFI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           INAWKCQSNYDQ E CCKHEG+ +E+E+LAS IT
Sbjct: 91  INAWKCQSNYDQAEICCKHEGNKEEKEELASSIT 124

[Close]

BLAST of CsGy1G006430 vs. NCBI nr
Match: XP_022137564.1 (heavy metal-associated isoprenylated plant protein 28-like isoform X4 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIEQKQCRVSVCGKFSPQD+AIKIRKKTNRRVEILEIQECDTF ENN IQGPLI
Sbjct: 31  KELETHLIEQKQCRVSVCGKFSPQDVAIKIRKKTNRRVEILEIQECDTFTENNDIQGPLI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           IN WKC+SNYDQ ETCC HEGDT E+E+LAS IT
Sbjct: 91  INPWKCRSNYDQAETCCMHEGDT-EKEELASSIT 123

[Close]

BLAST of CsGy1G006430 vs. TAIR10
Match: AT3G25855.1 (Copper transport protein family)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 24/57 (42.11%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 20 EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQG 77
          ++++TH+I +K+ +V +CG+F P D+A+K+++K  RRVEILE++  D  N + G +G
Sbjct: 32 KEVDTHMINKKERQVILCGRFRPSDVALKLQRKMKRRVEILEVE--DLTNGHGGEEG 86

[Close]

BLAST of CsGy1G006430 vs. TrEMBL
Match: tr|A0A0A0LSZ0|A0A0A0LSZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042260 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-47
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI
Sbjct: 31  KELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT
Sbjct: 91  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 124

[Close]

BLAST of CsGy1G006430 vs. TrEMBL
Match: tr|A0A1S3C5D5|A0A1S3C5D5_CUCME (uncharacterized protein LOC103497018 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497018 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 3   VFLHGFENSHGLQWMLQEKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEI 62
           VFLHGFENS+GLQWMLQE  +++    +  RVSVCGKFSPQDIAIKIRKKTNRRVEILE+
Sbjct: 22  VFLHGFENSYGLQWMLQESKKSY---SQYKRVSVCGKFSPQDIAIKIRKKTNRRVEILEV 81

Query: 63  QECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           QECDTFNENN IQGPLIINAWKCQSNYDQVETCC HEGDTKEQ++LAS IT
Sbjct: 82  QECDTFNENNDIQGPLIINAWKCQSNYDQVETCCTHEGDTKEQQELASSIT 129

[Close]

BLAST of CsGy1G006430 vs. TrEMBL
Match: tr|A0A1S3C512|A0A1S3C512_CUCME (uncharacterized protein LOC103497018 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497018 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIEQK CRVSVCGKFSPQDIAIKIRKKTNRRVEILE+QECDTFNENN IQGPLI
Sbjct: 31  KELETHLIEQKHCRVSVCGKFSPQDIAIKIRKKTNRRVEILEVQECDTFNENNDIQGPLI 90

Query: 80  INAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 114
           INAWKCQSNYDQVETCC HEGDTKEQ++LAS IT
Sbjct: 91  INAWKCQSNYDQVETCCTHEGDTKEQQELASSIT 124

[Close]

BLAST of CsGy1G006430 vs. TrEMBL
Match: tr|A0A1U8LS28|A0A1U8LS28_GOSHI (heavy metal-associated isoprenylated plant protein 25-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107930265 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRRVEILEIQE    +E    + PL+
Sbjct: 31  KELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRRVEILEIQEFSVNDEQTHEEKPLM 90

Query: 80  I--NAWKCQSNYDQVETC 96
           I  N W  +SN   +ETC
Sbjct: 91  ITSNTWNLESNQTHIETC 108

[Close]

BLAST of CsGy1G006430 vs. TrEMBL
Match: tr|A0A1U8HY05|A0A1U8HY05_GOSHI (heavy metal-associated isoprenylated plant protein 25-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107890815 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 20  EKLETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLI 79
           ++LETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRRVEILEIQE    +E    + PL+
Sbjct: 45  KELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRRVEILEIQEFSVNDEQTHEEKPLM 104

Query: 80  I--NAWKCQSNYDQVETC 96
           I  N W  +SN   +ETC
Sbjct: 105 ITSNTWNLESNQTHIETC 122

The following BLAST results are available for this feature:

BLAST of CsGy1G006430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650508.1	6.6e-47	97.87	PREDICTED: uncharacterized protein LOC101212620 [Cucumis sativus] >KGN64114.1 hy...	[more]
XP_008457333.1	7.3e-46	82.88	PREDICTED: uncharacterized protein LOC103497018 isoform X1 [Cucumis melo]	[more]
XP_008457410.1	5.8e-43	90.43	PREDICTED: uncharacterized protein LOC103497018 isoform X2 [Cucumis melo]	[more]
XP_022924036.1	1.8e-39	85.11	heavy metal-associated isoprenylated plant protein 7-like [Cucurbita moschata] >...	[more]
XP_022137564.1	3.0e-39	86.17	heavy metal-associated isoprenylated plant protein 28-like isoform X4 [Momordica...	[more]

BLAST of CsGy1G006430 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25855.1	1.5e-08	42.11	Copper transport protein family	[more]

BLAST of CsGy1G006430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G006430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSZ0\|A0A0A0LSZ0_CUCSA	4.4e-47	97.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042260 PE=4 SV=1	[more]
tr\|A0A1S3C5D5\|A0A1S3C5D5_CUCME	4.9e-46	82.88	uncharacterized protein LOC103497018 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C512\|A0A1S3C512_CUCME	3.9e-43	90.43	uncharacterized protein LOC103497018 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U8LS28\|A0A1U8LS28_GOSHI	2.5e-18	62.82	heavy metal-associated isoprenylated plant protein 25-like isoform X2 OS=Gossypi...	[more]
tr\|A0A1U8HY05\|A0A1U8HY05_GOSHI	2.5e-18	62.82	heavy metal-associated isoprenylated plant protein 25-like isoform X1 OS=Gossypi...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006430.1	CsGy1G006430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22814:SF72	SUBFAMILY NOT NAMED	coord: 20..94
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 20..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G006430	Csa1G042260	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G006430	ClCG04G011190	Watermelon (Charleston Gray)	cgybwcgB053
CsGy1G006430	CmaCh13G010300	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G006430	CmoCh13G010700	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G006430	Lsi02G001740	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G006430	Cp4.1LG20g01180	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G006430	CsaV3_1G006560	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G006430	Cla97C04G078060	Watermelon (97103) v2	cgybwmbB053
CsGy1G006430	Bhi08G001015	Wax gourd	cgybwgoB025
CsGy1G006430	Carg04808	Silver-seed gourd	carcgybB0393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G006430	Watermelon (97103) v2	cgybwmbB057
CsGy1G006430	Watermelon (97103) v2	cgybwmbB078
CsGy1G006430	Wax gourd	cgybwgoB013
CsGy1G006430	Wax gourd	cgybwgoB069
CsGy1G006430	Cucumber (Gy14) v2	cgybcgybB002
CsGy1G006430	Cucumber (Gy14) v2	cgybcgybB027
CsGy1G006430	Cucurbita maxima (Rimu)	cgybcmaB023
CsGy1G006430	Cucurbita maxima (Rimu)	cgybcmaB030
CsGy1G006430	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G006430	Cucurbita moschata (Rifu)	cgybcmoB024
CsGy1G006430	Cucurbita moschata (Rifu)	cgybcmoB029
CsGy1G006430	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G006430	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G006430	Cucurbita pepo (Zucchini)	cgybcpeB046
CsGy1G006430	Cucurbita pepo (Zucchini)	cgybcpeB128
CsGy1G006430	Cucumber (Chinese Long) v2	cgybcuB005
CsGy1G006430	Bottle gourd (USVL1VR-Ls)	cgyblsiB069
CsGy1G006430	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G006430	Melon (DHL92) v3.5.1	cgybmeB052
CsGy1G006430	Melon (DHL92) v3.6.1	cgybmedB004
CsGy1G006430	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G006430	Melon (DHL92) v3.6.1	cgybmedB046
CsGy1G006430	Watermelon (Charleston Gray)	cgybwcgB080
CsGy1G006430	Watermelon (97103) v1	cgybwmB064
CsGy1G006430	Watermelon (97103) v1	cgybwmB096
CsGy1G006430	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G006430	Wild cucumber (PI 183967)	cgybcpiB005
CsGy1G006430	Silver-seed gourd	carcgybB0469
CsGy1G006430	Silver-seed gourd	carcgybB0518
CsGy1G006430	Silver-seed gourd	carcgybB0595
CsGy1G006430	Cucumber (Chinese Long) v3	cgybcucB003
CsGy1G006430	Cucumber (Chinese Long) v3	cgybcucB037