Cucsa.113730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.113730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Copper transport protein family
Location	scaffold00953 : 1819374 .. 1820426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAAAAACCACATCAGTTTTCTCTCTGTTTACGTGTTTAAGCATCATTCAGGGAGAAAGGTTTTGTTTTGGACAGTGTTTTAATGACAGGAAAGGCAAGTTCAACCTCACCAACTCTCCATTCTTCTTCTCCTTCGAAGCTTCATTGGTATTAATGAACTGTTTTCCCTTGACAACTATGGCAGTTTTTCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGGGCTATTCTCAGTATAAAAGGTGAAATCTCTTTCTTTCTCTGTTTCATTCTCTATAGAGAAATTATTTAAGGGGGCTGCTAAAACAATATGGCTGACTATTTCAAACCATTCAAAATCAGAGAGTAATTAAATTCTATTTTTTTACCATGAAACTAATGGTTAGAGTTTAGAAAAAGACAGTCATATTGAGGAAGTCAGAATAAATAATTTCGCATCTCTGTCTCTCTCAATCCTTTAGTTTTGAGTTAGACTTGCTCTCTTCAATTGATTCTACTTGGTAACCTGTGACATGTAACTTCTTGTCACCTTGATAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAAATTCTTCTTCATCTTTCAAACTATTTTACCATTTTTCTGTCATACATGCAAATTACTTCATAAAGTTGTATGGATTTAGTTGTTTACTTAGAGACCAAAAGAGAACCTACAGTTGATCATGTTGGAATTTTGAAGTCCAGTGCTTACACTTCTATTATTTTATTCACAAATAAGCTATTTATATTTATAGACAGAACAATCAAGGCATA

mRNA sequence

TGTGAAAAACCACATCAGTTTTCTCTCTGTTTACGTGTTTAAGCATCATTCAGGGAGAAAGGTTTTGTTTTGGACAGTGTTTTAATGACAGGAAAGGCAAGTTCAACCTCACCAACTCTCCATTCTTCTTCTCCTTCGAAGCTTCATTGGTATTAATGAACTGTTTTCCCTTGACAACTATGGCAGTTTTTCTGCATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGGGCTATTCTCAGTATAAAAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAAATTCTTCTTCATCTTTCAAACTATTTTACCATTTTTCTGTCATACATGCAAATTACTTCATAAAGTTGTATGGATTTAGTTGTTTACTTAGAGACCAAAAGAGAACCTACAGTTGATCATGTTGGAATTTTGAAGTCCAGTGCTTACACTTCTATTATTTTATTCACAAATAAGCTATTTATATTTATAGACAGAACAATCAAGGCATA

Coding sequence (CDS)

ATGGTTTTGAGAATTCACATGGACTGCAATGGATGTTACAGGAAAGTAAGAAGGGCTATTCTCAGTATAAAAGAGTTGGAGACCCATTTGATAGAACAAAAGCAGTGCAGGGTAAGCGTTTGTGGGAAGTTTAGCCCTCAAGATATAGCAATCAAAATAAGAAAGAAAACCAACCGCAGAGTAGAGATATTGGAGATTCAAGAGTGTGATACCTTCAATGAAAACAATGGTATCCAAGGGCCCTTGATCATCAATGCCTGGAAATGCCAATCAAACTATGACCAAGTTGAAACTTGTTGTAAGCATGAAGGTGACACAAAAGAACAGGAAGACTTAGCTTCTCCTATAACATAA

Protein sequence

MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT*

Homology

[Close]

BLAST of Cucsa.113730 vs. TrEMBL
Match: A0A0A0LSZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042260 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-62
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR
Sbjct: 8   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 67

Query: 61  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 118
           VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT
Sbjct: 68  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 124

[Close]

BLAST of Cucsa.113730 vs. TrEMBL
Match: A0A0B0MSQ4_GOSAR (Zinc finger protein OS=Gossypium arboreum GN=F383_25478 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-31
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV+RI++DCNGCYRKVRRA+L +KELETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRR
Sbjct: 1   MVMRINIDCNGCYRKVRRALLDMKELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRR 60

Query: 61  VEILEIQECDTFNENNGIQGPLII--NAWKCQSNYDQVETC 100
           VEILEIQE    +E    + PL+I  N W  +SN   +ETC
Sbjct: 61  VEILEIQEFSINDEQTHEEKPLMITSNTWNLESNQTHIETC 101

[Close]

BLAST of Cucsa.113730 vs. TrEMBL
Match: A0A0D2RZ60_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G195000 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-31
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV+RI++DCNGCYRKVRRA+L +KELETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRR
Sbjct: 35  MVMRINIDCNGCYRKVRRALLDMKELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRR 94

Query: 61  VEILEIQECDTFNENNGIQGPLII--NAWKCQSNYDQVETC 100
           VEILEIQE    +E    + PL+I  N W  +SN   +ETC
Sbjct: 95  VEILEIQEFSINDEQTHEEKPLMITSNTWNLESNQTHIETC 135

[Close]

BLAST of Cucsa.113730 vs. TrEMBL
Match: A0A061FUS4_THECC (Copper transport protein family OS=Theobroma cacao GN=TCM_012322 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30
Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV++I++DCNGCYRKVRRA+L I+EL+THLIE+KQCRVSVCG+F PQDIAIKIRKKTNRR
Sbjct: 70  MVMKINIDCNGCYRKVRRALLDIQELDTHLIEKKQCRVSVCGRFIPQDIAIKIRKKTNRR 129

Query: 61  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETC 100
           VEILEIQE +  NE    +   +I++W  +SN + V TC
Sbjct: 130 VEILEIQEFNIDNEQISHEEKALISSWNPESNQNHVATC 168

[Close]

BLAST of Cucsa.113730 vs. TrEMBL
Match: D7SIY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03840 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-29
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV+RI++DCNGCYRKVRRA+L+I+ELETHLIE KQCRV+VCG+F PQD+AIK+RKKTNRR
Sbjct: 101 MVMRINIDCNGCYRKVRRALLNIQELETHLIEMKQCRVTVCGRFIPQDVAIKLRKKTNRR 160

Query: 61  VEILEIQECDTFNENNGIQGPLIIN-AWKCQSNYDQVETC 100
           VEIL+IQE    +EN   Q PLI + +W   S+  Q ETC
Sbjct: 161 VEILDIQEFSVSSENQE-QKPLISSTSWNLLSSPSQFETC 199

[Close]

BLAST of Cucsa.113730 vs. TAIR10
Match: AT3G25855.1 (AT3G25855.1 Copper transport protein family)

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-18
Identity = 38/80 (47.50%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 1  MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
          +V+RI++DCN C RK RR I+++KE++TH+I +K+ +V +CG+F P D+A+K+++K  RR
Sbjct: 9  VVMRINLDCNACCRKARRIIINMKEVDTHMINKKERQVILCGRFRPSDVALKLQRKMKRR 68

Query: 61 VEILEIQECDTFNENNGIQG 81
          VEILE++  D  N + G +G
Sbjct: 69 VEILEVE--DLTNGHGGEEG 86

[Close]

BLAST of Cucsa.113730 vs. TAIR10
Match: AT3G21490.1 (AT3G21490.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1


Query: 5  IHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVEIL 64
          + M CN C RK+ R I   K +ET + +    +V V GK  P  +  K++KKT +RV+I+
Sbjct: 20 VSMHCNDCERKIARVISKFKGVETFVTDMINHKVVVRGKIDPNKLLKKLKKKTGKRVKIV 79

Query: 65 EIQE 69
            +E
Sbjct: 80 VKEE 83

[Close]

BLAST of Cucsa.113730 vs. TAIR10
Match: AT5G24580.1 (AT5G24580.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 2   VLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRV 61
           +L + + C GC +K+ R+IL I+ +E  +++  + +V++ G   PQ +  KI+KKT R  
Sbjct: 59  ILYVDLHCVGCAKKIERSILKIRGVEEVVMDMNENQVTIKGVLDPQAVCNKIKKKTKRMA 118

Query: 62  EIL 65
           ++L
Sbjct: 119 KVL 121

[Close]

BLAST of Cucsa.113730 vs. TAIR10
Match: AT4G38580.1 (AT4G38580.1 farnesylated protein 6)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 20/61 (32.79%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 3  LRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRRVE 62
          +++ MDC GC RKVRR++  +K + +  +E K  +V+V G   P  +  ++  +T ++VE
Sbjct: 30 IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVE 89

Query: 63 I 64
          +
Sbjct: 90 L 90

[Close]

BLAST of Cucsa.113730 vs. TAIR10
Match: AT5G63530.1 (AT5G63530.1 farnesylated protein 3)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 23/65 (35.38%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCG-KFSPQDIAIKIRKKTNR 60
           +VL+++M C GC RKVRR +   + +E  + + K  +V V G K  P  +  ++++KT+R
Sbjct: 75  VVLKVYMHCEGCARKVRRCLKGFEGVEDVMTDCKTGKVVVKGEKADPLKVLARVQRKTHR 134

Query: 61  RVEIL 65
           +V++L
Sbjct: 135 QVQLL 139

HSP 2 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 20/66 (30.30%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           +VL++HM C  C  ++++ I+ +K +E+   + K  +V+V G F PQ +   + K+T + 
Sbjct: 173 VVLKVHMHCEACATEIKKRIMRMKGVESAESDLKSSQVTVKGVFEPQKLVEYVYKRTGKH 232

Query: 61  VEILEI 67
             I++I
Sbjct: 233 AAIMKI 238

[Close]

BLAST of Cucsa.113730 vs. NCBI nr
Match: gi|778657232|ref|XP_011650508.1| (PREDICTED: uncharacterized protein LOC101212620 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.0e-62
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR
Sbjct: 8   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 67

Query: 61  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 118
           VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT
Sbjct: 68  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 124

[Close]

BLAST of Cucsa.113730 vs. NCBI nr
Match: gi|659066710|ref|XP_008457410.1| (PREDICTED: uncharacterized protein LOC103497018 isoform X2 [Cucumis melo])

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-58
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQK CRVSVCGKFSPQDIAIKIRKKTNRR
Sbjct: 8   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKHCRVSVCGKFSPQDIAIKIRKKTNRR 67

Query: 61  VEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQVETCCKHEGDTKEQEDLASPIT 118
           VEILE+QECDTFNENN IQGPLIINAWKCQSNYDQVETCC HEGDTKEQ++LAS IT
Sbjct: 68  VEILEVQECDTFNENNDIQGPLIINAWKCQSNYDQVETCCTHEGDTKEQQELASSIT 124

[Close]

BLAST of Cucsa.113730 vs. NCBI nr
Match: gi|659066708|ref|XP_008457333.1| (PREDICTED: uncharacterized protein LOC103497018 isoform X1 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 9.7e-37
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 1


Query: 37  RVSVCGKFSPQDIAIKIRKKTNRRVEILEIQECDTFNENNGIQGPLIINAWKCQSNYDQV 96
           RVSVCGKFSPQDIAIKIRKKTNRRVEILE+QECDTFNENN IQGPLIINAWKCQSNYDQV
Sbjct: 49  RVSVCGKFSPQDIAIKIRKKTNRRVEILEVQECDTFNENNDIQGPLIINAWKCQSNYDQV 108

Query: 97  ETCCKHEGDTKEQEDLASPIT 118
           ETCC HEGDTKEQ++LAS IT
Sbjct: 109 ETCCTHEGDTKEQQELASSIT 129

[Close]

BLAST of Cucsa.113730 vs. NCBI nr
Match: gi|823176445|ref|XP_012486450.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26-like isoform X2 [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV+RI++DCNGCYRKVRRA+L +KELETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRR
Sbjct: 8   MVMRINIDCNGCYRKVRRALLDMKELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRR 67

Query: 61  VEILEIQECDTFNENNGIQGPLII--NAWKCQSNYDQVETC 100
           VEILEIQE    +E    + PL+I  N W  +SN   +ETC
Sbjct: 68  VEILEIQEFSINDEQTHEEKPLMITSNTWNLESNQTHIETC 108

[Close]

BLAST of Cucsa.113730 vs. NCBI nr
Match: gi|823176442|ref|XP_012486449.1| (PREDICTED: uncharacterized protein LOC105800088 isoform X1 [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 1   MVLRIHMDCNGCYRKVRRAILSIKELETHLIEQKQCRVSVCGKFSPQDIAIKIRKKTNRR 60
           MV+RI++DCNGCYRKVRRA+L +KELETHLIE+KQCRVSVCG+F P+D+AIKIRKKTNRR
Sbjct: 35  MVMRINIDCNGCYRKVRRALLDMKELETHLIEKKQCRVSVCGRFVPRDVAIKIRKKTNRR 94

Query: 61  VEILEIQECDTFNENNGIQGPLII--NAWKCQSNYDQVETC 100
           VEILEIQE    +E    + PL+I  N W  +SN   +ETC
Sbjct: 95  VEILEIQEFSINDEQTHEEKPLMITSNTWNLESNQTHIETC 135

The following BLAST results are available for this feature:

BLAST of Cucsa.113730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ0_CUCSA	2.1e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042260 PE=4 SV=1	[more]
A0A0B0MSQ4_GOSAR	7.3e-31	67.33	Zinc finger protein OS=Gossypium arboreum GN=F383_25478 PE=4 SV=1	[more]
A0A0D2RZ60_GOSRA	7.3e-31	67.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G195000 PE=4 SV=1	[more]
A0A061FUS4_THECC	2.8e-30	66.67	Copper transport protein family OS=Theobroma cacao GN=TCM_012322 PE=4 SV=1	[more]
D7SIY0_VITVI	8.9e-29	67.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03840 PE=4 SV=...	[more]

BLAST of Cucsa.113730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25855.1	4.8e-18	47.50	Copper transport protein family	[more]
AT3G21490.1	1.1e-06	37.50	Heavy metal transport/detoxification superfamily protein	[more]
AT5G24580.1	1.1e-06	33.33	Heavy metal transport/detoxification superfamily protein	[more]
AT4G38580.1	1.5e-06	32.79	farnesylated protein 6	[more]
AT5G63530.1	5.5e-06	35.38	farnesylated protein 3	[more]

BLAST of Cucsa.113730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657232\|ref\|XP_011650508.1\|	3.0e-62	100.00	PREDICTED: uncharacterized protein LOC101212620 [Cucumis sativus]	[more]
gi\|659066710\|ref\|XP_008457410.1\|	2.6e-58	94.02	PREDICTED: uncharacterized protein LOC103497018 isoform X2 [Cucumis melo]	[more]
gi\|659066708\|ref\|XP_008457333.1\|	9.7e-37	92.59	PREDICTED: uncharacterized protein LOC103497018 isoform X1 [Cucumis melo]	[more]
gi\|823176445\|ref\|XP_012486450.1\|	1.0e-30	67.33	PREDICTED: heavy metal-associated isoprenylated plant protein 26-like isoform X2...	[more]
gi\|823176442\|ref\|XP_012486449.1\|	1.0e-30	67.33	PREDICTED: uncharacterized protein LOC105800088 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006121	HMA_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.113730.1	Cucsa.113730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 3..55 score: 4.1
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 2..62 score: 2.
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..85 score: 1.9
None	No IPR available	PANTHER	PTHR22814:SF72	SUBFAMILY NOT NAMED	coord: 1..85 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.113730	Csa1G042260	Cucumber (Chinese Long) v2	cgycuB137
Cucsa.113730	ClCG04G011190	Watermelon (Charleston Gray)	cgywcgB160
Cucsa.113730	CmaCh13G010300	Cucurbita maxima (Rimu)	cgycmaB0264
Cucsa.113730	CmoCh13G010700	Cucurbita moschata (Rifu)	cgycmoB0262
Cucsa.113730	Lsi02G001740	Bottle gourd (USVL1VR-Ls)	cgylsiB148
Cucsa.113730	Cp4.1LG20g01180	Cucurbita pepo (Zucchini)	cgycpeB0257
Cucsa.113730	CsaV3_1G006560	Cucumber (Chinese Long) v3	cgycucB143
Cucsa.113730	Cla97C04G078060	Watermelon (97103) v2	cgywmbB156
Cucsa.113730	Bhi08G001015	Wax gourd	cgywgoB179
Cucsa.113730	Carg04808	Silver-seed gourd	carcgyB0448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.113730	Wild cucumber (PI 183967)	cgycpiB137
Cucsa.113730	Melon (DHL92) v3.5.1	cgymeB156
Cucsa.113730	Watermelon (97103) v1	cgywmB163
Cucsa.113730	Melon (DHL92) v3.6.1	cgymedB156