Lsi01G007240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G007240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Translation initiation factor IF-2, putative isoform 1
Location	chr01 : 5740196 .. 5742970 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGGTATGTTGAAATTCGTAGTGATTCCGATCCTTTTTCCCGAAGCCGGAATTTAAGTGAAGGAAAATTGTTTTTTTTTCCCCTCTTCCGGCGACTAATTGTCCGCGGATTTAACATAATTGTTCCGCTGCTTTCGCCTTCACTTGTGTTTAGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGTTGCGCGTTCTGATTGGTAACTGCTCCCTTATATGACGTTTCTTTGCTGCAACTCATCTTCTTTCCTCTGCTGGTGGCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTAAGTAATTTTTCATTGTATATCTTAAATTGTATCGTAGTAGAACGATTGACACCTTGCGAGCTCACAAATATGATTTAGCTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAGAACGCTACTAGAAATATAACCGTGTACTATTTGGTGTTGACTTATATATTTATTGACAATTCTTGATTTTAGGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGGTTTTTGCACATCGATTACTGCATTAGCCTTTTCATGTTAATATCCCATAGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGGTCCGGGTCAAAGGAATAGAATTATTGTAGTGATAGTGTGTCTGCAATCAATTATTGATGTTTTGTTTTCAATAATTAAAGATGTTTTGTTTTAAACACTAAGGGTGTCTAAGCTTAGCTAACTTATGTATATAAACTAATTATTGACGACTATCTAGACTTTATTAGCTTGATCTTGAGCTTCAATAAGTTTGAATACATGACGTCTTGGTAATAAGTTGGGATCTTGTTGCTCACCATTGGTTAGGCTTAGTGGTTAATAAAGTCCAATGTAAATAGTGCAAACAACTTAAAGAGAATGAGTTCAACACATGGTGACCACCTCGCCTGCCAAAGATTTGATAACCTACGAGTTTTTTGACAACAAAATTAGGGTCACGGTTAGATGGTTTTTTTCGGTGAGGATGGTTGAGGCGCACAAGCTGACCTTATGAAGACTCCTTTGTATACGCATTGGTAAATTGAAATAAACTTTGTAACTAGTATTGGTTTGAACTTTGTTATCAAATAAGTATTGCTTTTACAATAGGATGCTGTTTGAAATTTGAAAATACTAGTTTTTGGTACATTGGATTGTAGTTTTGTTTTTTCCTCCCTCTTTTAGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTTGTTCATTTATATATGTTCTCTGCCATCATCTATTGGTCAATATTATCAACTAGTAGAGAAATTAATTCCCGGGCTAAGTTGCAAAAAAGTTATTGGGAGGCATTAGTCGATCATTTATCATTAAAAGTATAATTTAGCGCGTCAAAAATAATCACTCAGTGTGACTAGATTGTAGAGGGAATGATGGAAGTGCTGGTTTCATTTCAAGTCATAATTACCATTATAACTATTACAGATATGGATAAAAATCATTTATTGACAGAAAAAGATCTAGAAAAAGCTAGGGAAATTCTTGACCCATGGAAGGAAGCTGCATAGATGAATTTTTCCAAGTACAAAAATCAGCATGGCTATTACTAAAAAAACATGTAAAGCTTACATTTTAGTAACATCTCAGGCTTGTTTGAGGAATTGTCTCAACAAAACTTTCTTAAGGCTGTTTTTCCTCTATTTAATGTATTCTACAATAAGCTAACGTTCTCGTTCCTTAGGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

mRNA sequence

TTCAATTTGAAACGAGTATTTTTCCTCCGCCCAATCTTCTTCCCCACGTCTTAACATTGGTCCTCCGCAGGATCTGAAAAGGAGGAAAAAGGAAATTTCGCGGCAGTTCACCGGCGTAGTTTAATCCATTTATTCCCATCTCTGGCGGTTGCACGTCTTCAAGTTTTGGAAACCCACTGAGAACTTTAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTCTTTATTGTCGTTTTCATTTATGAAAATCCAGTGACGAAGTGCGGATTCGTCTCAGAATGCTGCAACGTGAGTAGTCCATTAAAGTCAAGAAAGACTGGTTGCTGGGAATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACAGTTAAGAAGTCCAGCCTTTCACCTGTACGAGAAGCAAAGGATGAAGCAGCAAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCTGTGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCGAAGAAAAACTTCCAAGCTTGTCCATTTCGAGAAGAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAATTACACACCAATCCAGCTGATGGAATAGATATACATGCTTCTCTCCTTCATCGCCTGTCCACAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTTAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACAAATCCTTTCAATGTTGAGAACCTGCAAATCCCGAACTTCGTTTTGGAGGAGCCCTCGGATAATGTGGTTCTCGGCATGCCAGACATACTCCAAACTCCTGGGGTTCGCATCTTTATGTTGTCTGATATAGCCATTTTTTCAATATTTGGTGGTGTTTTTACTCAAAATCTCTGGGCACATAGACGCGCTTCATTTTGGATTTTATTATTTCTACTCGAGTCTTCAGTAAATGTTCCTATGGATGTCAATACCATGATAAATGTGAGTAACCAAAGACTGTCCTTTGGGATGACACCGAAAACCCGAAGATTGCCAAAGCCGGGTGAGATGCTTGTGTCTATCCATGGATCCCCCCTTGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGTTCATTTAG

Protein sequence

MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTMINVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHGMFI

Homology

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BLAST of Lsi01G007240 vs. TrEMBL
Match: A0A0A0KK81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-83
Identity = 168/181 (92.82%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEIERLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 V 182
           V
Sbjct: 181 V 181

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BLAST of Lsi01G007240 vs. TrEMBL
Match: A0A0A0KRH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622550 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 5.1e-83
Identity = 168/194 (86.60%), Postives = 177/194 (91.24%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R+AKDEA N      DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 ILQTPGVRIFMLSD 189
           I+QTPGVRIFM+S+
Sbjct: 183 IVQTPGVRIFMISN 196

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BLAST of Lsi01G007240 vs. TrEMBL
Match: A0A068TLI5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013987001 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.8e-43
Identity = 124/285 (43.51%), Postives = 159/285 (55.79%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAA---------NDEDVERHAAAICAIRDVEIERLIT 60
           MA+++ +K  K+   +     K+EA           DE+VE   AAI A+R +EIE+L T
Sbjct: 1   MAKKRGRKPAKQKESNIENVDKEEAVPEKSEKNEFQDEEVEHQIAAIRALRHMEIEQLRT 60

Query: 61  ELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGID 120
            L LLRS F+KEQLQ PLLQFF+E  P+LSI +  + G  EVQ KD +  L+TN A+G +
Sbjct: 61  MLHLLRSCFSKEQLQVPLLQFFKENFPNLSIVKNEKNGIYEVQQKDDKGNLYTNQANGGN 120

Query: 121 IHASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLG 180
           +HASLLHRLS  YP++S    S   FEFS+KSVK +                      LG
Sbjct: 121 LHASLLHRLSMTYPDFSTVKPSLGDFEFSNKSVKAS---------------------FLG 180

Query: 181 MPDILQTPGVRIFMLSDIAIFSIFGGVFTQNLWAHRRASFWILLFLLESSVNVPMDVNTM 240
           + D +Q  G  +  LSD  IF              R+  F             P      
Sbjct: 181 V-DCMQIRGFDLEELSDATIFE-------------RQDKF-----------RTP------ 232

Query: 241 INVSNQRLSFGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAI 277
            +V+NQRLS G+TPKT+RLPK GEML+S+HGSPLGVYKEDNMEAI
Sbjct: 241 -DVNNQRLSVGLTPKTKRLPKHGEMLLSVHGSPLGVYKEDNMEAI 232

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BLAST of Lsi01G007240 vs. TrEMBL
Match: V4S1T9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026392mg PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 101/194 (52.06%), Postives = 135/194 (69.59%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDED-------VERHAAAICAIRDVEIERLITEL 60
           M  ++  +  KK+  S   EAK+    D+D       VER  AA+ AIRDVE+E+ +T L
Sbjct: 1   MPPKRRGRPAKKALSSNAEEAKESQVEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL 60

Query: 61  RLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIH 120
           RLLRSYFN+EQ+QTP+LQFFEE LP+L++ R  + G+ EV+WKD +   + + ADG DIH
Sbjct: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH 120

Query: 121 ASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMP 180
           ASLLHR+S  YP Y +G  SF+G+ FSSK+VKTN   V+NLQI +FVLEEPS++ + GM 
Sbjct: 121 ASLLHRMSIGYP-YCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMH 180

Query: 181 DILQTPGVRIFMLS 188
           + L+TPGV    LS
Sbjct: 181 EALRTPGVTSQRLS 193

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BLAST of Lsi01G007240 vs. TrEMBL
Match: A0A067F929_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026687mg PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.0e-42
Identity = 101/194 (52.06%), Postives = 135/194 (69.59%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDED-------VERHAAAICAIRDVEIERLITEL 60
           M  ++  +  KK+  S   EAK+    D+D       VER  AA+ AIRDVE+E+ +T L
Sbjct: 1   MPPKRRGRPAKKALPSNAEEAKESQLEDKDAELFYREVERQCAAVRAIRDVELEQTLTGL 60

Query: 61  RLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIH 120
           RLLRSYFN+EQ+QTP+LQFFEE LP+L++ R  + G+ EV+WKD +   + + ADG DIH
Sbjct: 61  RLLRSYFNEEQMQTPVLQFFEENLPNLTVLRDDKNGKFEVRWKDEDGNFYMDNADGKDIH 120

Query: 121 ASLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMP 180
           ASLLHR+S  YP Y +G  SF+G+ FSSK+VKTN   V+NLQI +FVLEEPS++ + GM 
Sbjct: 121 ASLLHRMSIGYP-YCSGAPSFSGYGFSSKAVKTNLLGVDNLQIGDFVLEEPSNSQMFGMH 180

Query: 181 DILQTPGVRIFMLS 188
           + L+TPGV    LS
Sbjct: 181 EALRTPGVTSQRLS 193

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BLAST of Lsi01G007240 vs. TAIR10
Match: AT4G39630.1 (AT4G39630.1 unknown protein)

HSP 1 Score: 132.9 bits (333), Expect = 3.1e-31
Identity = 86/188 (45.74%), Postives = 117/188 (62.23%), Query Frame = 1


Query: 1   MARRKAKKTVK-----KSSLSPVR-EAKDEAANDEDVERHAAAICAIRDVEIERLITELR 60
           M +RKAK+ VK     ++    +R E K E   DE+VER  AAI AIRDVEIE+++T LR
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRAIRDVEIEQMLTALR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYF +EQL TP+L FF+E LP LSISR  E GEIE++W+D   +      +G+D++ 
Sbjct: 61  LLRSYFTEEQLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SLLHRLSTAYPN-YSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMP 180
           S+L RLS  + + YS    S  G++    +VK N    +N Q+ N V +  S+N +L   
Sbjct: 121 SILKRLSMRFTDLYSRS--SLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGH 180

Query: 181 DILQTPGV 182
           D  QTPGV
Sbjct: 181 DAFQTPGV 185

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BLAST of Lsi01G007240 vs. NCBI nr
Match: gi|659091950|ref|XP_008446820.1| (PREDICTED: uncharacterized protein LOC103489436 isoform X1 [Cucumis melo])

HSP 1 Score: 323.9 bits (829), Expect = 2.7e-85
Identity = 173/194 (89.18%), Postives = 179/194 (92.27%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R AKDEAA+      DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGVRIFMLSD 189
           ILQTPGVRIFM+S+
Sbjct: 181 ILQTPGVRIFMISN 194

[Close]

BLAST of Lsi01G007240 vs. NCBI nr
Match: gi|449451487|ref|XP_004143493.1| (PREDICTED: uncharacterized protein LOC101215210 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 2.5e-83
Identity = 168/181 (92.82%), Postives = 170/181 (93.92%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKSS SP+ EAKDEAANDEDVERHAAAI AIRDVEIERLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]

BLAST of Lsi01G007240 vs. NCBI nr
Match: gi|778706510|ref|XP_011655865.1| (PREDICTED: uncharacterized protein LOC101204054 isoform X1 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 7.4e-83
Identity = 168/194 (86.60%), Postives = 177/194 (91.24%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R+AKDEA N      DEDVERHAAAI AIRDVEIERLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEV+WKDTEDELHTNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 ILQTPGVRIFMLSD 189
           I+QTPGVRIFM+S+
Sbjct: 183 IVQTPGVRIFMISN 196

[Close]

BLAST of Lsi01G007240 vs. NCBI nr
Match: gi|659080202|ref|XP_008440665.1| (PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo])

HSP 1 Score: 315.1 bits (806), Expect = 1.3e-82
Identity = 167/181 (92.27%), Postives = 169/181 (93.37%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAANDEDVERHAAAICAIRDVEIERLITELRLLRSYF 60
           MARRKAKKTVKKS+ SPV EAKDE ANDEDVERHAAAI AIRDVEI RLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWKDTEDEL TNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 STAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPDILQTPG 180
           S AYPN SAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+VLGMPDILQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 V 182
           V
Sbjct: 181 V 181

[Close]

BLAST of Lsi01G007240 vs. NCBI nr
Match: gi|659091954|ref|XP_008446822.1| (PREDICTED: uncharacterized protein LOC103489436 isoform X2 [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 4.8e-82
Identity = 167/187 (89.30%), Postives = 172/187 (91.98%), Query Frame = 1


Query: 1   MARRKAKKTVKKSSLSPVREAKDEAAN------DEDVERHAAAICAIRDVEIERLITELR 60
           MARRKAKKTVKKSS S  R AKDEAA+      DEDVERHAAAI AIRDVEIERLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLPSLSIS RG+QGEIEVQWKDTEDELHTNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSTAYPNYSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNVVLGMPD 180
           SLLHRLSTAYP  SAGMRSFNGFEFSSKSVKTNPFN ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 ILQTPGV 182
           ILQTPG+
Sbjct: 181 ILQTPGI 187

The following BLAST results are available for this feature:

BLAST of Lsi01G007240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G007240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK81_CUCSA	1.8e-83	92.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501280 PE=4 SV=1	[more]
A0A0A0KRH4_CUCSA	5.1e-83	86.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G622550 PE=4 SV=1	[more]
A0A068TLI5_COFCA	8.8e-43	43.51	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00013987001 PE=4 SV=1	[more]
V4S1T9_9ROSI	1.2e-42	52.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026392mg PE=4 SV=1	[more]
A0A067F929_CITSI	2.0e-42	52.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026687mg PE=4 SV=1	[more]

BLAST of Lsi01G007240 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39630.1	3.1e-31	45.74	unknown protein	[more]

BLAST of Lsi01G007240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091950\|ref\|XP_008446820.1\|	2.7e-85	89.18	PREDICTED: uncharacterized protein LOC103489436 isoform X1 [Cucumis melo]	[more]
gi\|449451487\|ref\|XP_004143493.1\|	2.5e-83	92.82	PREDICTED: uncharacterized protein LOC101215210 [Cucumis sativus]	[more]
gi\|778706510\|ref\|XP_011655865.1\|	7.4e-83	86.60	PREDICTED: uncharacterized protein LOC101204054 isoform X1 [Cucumis sativus]	[more]
gi\|659080202\|ref\|XP_008440665.1\|	1.3e-82	92.27	PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo]	[more]
gi\|659091954\|ref\|XP_008446822.1\|	4.8e-82	89.30	PREDICTED: uncharacterized protein LOC103489436 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:1903047	mitotic cell cycle process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0016569	chromatin modification
biological_process	GO:0016458	gene silencing
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0019219	regulation of nucleobase-containing compound metabolic process
biological_process	GO:1902589	single-organism organelle organization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G007240.1	Lsi01G007240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37248	FAMILY NOT NAMED	coord: 235..277 score: 1.9E-92coord: 1..181 score: 1.9
None	No IPR available	PANTHER	PTHR37248:SF1	SUBFAMILY NOT NAMED	coord: 1..181 score: 1.9E-92coord: 235..277 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G007240	Csa6G501280	Cucumber (Chinese Long) v2	culsiB434
Lsi01G007240	CSPI06G30600	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G007240	Cucsa.104730	Cucumber (Gy14) v1	cgylsiB125
Lsi01G007240	CmaCh03G007840	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G007240	CmaCh07G005150	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G007240	CmoCh07G005100	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G007240	CmoCh03G008180	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G007240	Cla014177	Watermelon (97103) v1	lsiwmB144
Lsi01G007240	MELO3C007790	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G007240	ClCG01G019130	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G007240	MELO3C007790.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G007240	Cla97C01G018600	Watermelon (97103) v2	lsiwmbB115
Lsi01G007240	Bhi03G000953	Wax gourd	lsiwgoB181
Lsi01G007240	Cp4.1LG19g09490	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G007240	Cp4.1LG10g01060	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G007240	CsGy6G030060	Cucumber (Gy14) v2	cgyblsiB398
Lsi01G007240	Carg00669	Silver-seed gourd	carlsiB364
Lsi01G007240	Carg16025	Silver-seed gourd	carlsiB693
Lsi01G007240	CsaV3_6G045820	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None