CsaV3_6G045820 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G045820
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Translation initiation factor
Location	chr6 : 27121108 .. 27124063 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCGCATCCCGTCAACATTGCTATTATTCAATTTCAAACCACCATCTTTCTCCCGCCCAATCTTCTTGCCCACGTCTCAACATCGGTTCTTCGGCAGAGCTCAAAAAGAGGAAGAGAGAGATTTACCGGTGTAAATTAATCCATTTTTTTCCGTCTCCGGCAGCTACATTTCTTCATGTTTTAGAATCCCACTGCGAACTTCAATTAATTTCACTGTGCACTACATTAGGGTTTGAAAGTTTTTGTACAGTTGAAAATCCAGTGACGAAGTACGGATTCATCTCAGAATGCTGCAATCTGAGTAGTCCAGTAAAGCCAAGAAAGACTGGTAGCTGAGAATGGCAAGGCGAAAGGCGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTATACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGGTATGTTGAAATTCGTGGTGATTTCGATTCTTTTACTGAAGCCGGAATTTAATTGAAAGAAAATTGTTTTGTTTCTCTTCCCGTTAACATAATTGTTCCTCTGTTTTCCCTTTTACTCGTGTTTAGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAAACTTCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAACTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGAATGCGATCTTTCAATGGATTCGAATTTTCCAGTAAATCAGGTATCTGTAGATTTTGGATTTTGGAGCGCAAAATCATTTAGTAAGTGCCCCCTTATACGACGCTTCTTTGCTGCAACTCACCTTCTTTTCTCTACTGATGGCAGTGAAAACGAATCCTTTCATTGTCGAGAACCTGCAAATTCCAAACTTTGTAAGTAATATTTGCATATGATATCTTAAATCGTACAGTAGTAGAATGAGTTATATGGTGCGAGCACACAACATACGATGTAGTTTGTCTATATCTTTTGTTTCATGTTGTTGATTTGTGGAAGAACGCTACTAGAAATAAAACCGTGAACAATTTGGTATTGACTCATAGATTTGTTAACAATTCTTGATTTTAGGTTTTGGAGGAGCCCTCGGATAATTTGGTGCTCGGCATGCCAGACATACACCAAACTCCTGGGGTTTGTATCTTTATGGTTTTTGCACATCGCTTATTGCATTGGCCTTTTCATGTTAATATTCTATAGCTGTCTGTTATTGCCATTTTTTTAGGCGGTGTTTTCACTTAAATTATCTAGGCACATTGATTGTCGGGGTCTAAGGAATGGAATTACTGTAGTGATAGATGGGTGGCTGCAATCAATTATTAATGTTTTATTTTCAATAATTAACGGTGTTTTGTTTAAATATTTAAGGGTGTCTAAGCTAATTCATGTCTATAAGTAGGGATTTATTGCCTCAATCTGTCAATAAGTTTGAGTTGTGACTTCTTGGTTATAAGTTGGGATCTTGTTGCCCACCATCAGTTAAACTTTGTGGTTAATGAAGTCTAAATGTAGGGAATAAGTTCAGCACATAGTGGCCATCCCACTACCAAATATTTGAAAATCAAAGTAGAATCACATTATGATAGTTTTTTCTGTGAGGATAGTTGAGGCTAACAAGCTGACCTTAAAGAAAACATGGCCTTCATATACTCATTAGTAAATCGGAAATGAACTTTGAACCTAGTATTTGTCTTGCAATCGGATGCTATTTGAAATTTTGGAACGTTGGACTATAGTTTTGTTTTTTCTTCTCTCTTTTAATGGTTCATTTTGGATTTGAATATTTCTACTCCGAAACTTCAGTGTAAATGTTCCTATGGATATCAATACCATGATAAAAGTTCATATTTATATATGTTTTCTGCCAACCAACTAGGGGAGATAAATTAAGTTCCGAGCTAAGTTGCAAAAAAGTTATTGGGAGCCGGGAGGCAATAGTCGATCATTTCAAAAATCAATCATGACTAGATCGTAGAGGGAATGATGGAACACGGCTTCATTTCTAGTAATTAAATAATTTATTTGTTAAGACAGGGAAAATCTTGAACCCATGAAGGAAGCTGCAAAGATGAATTCTAAGTACAAAGATCGGCATGGTTCTTACTAAAAAATACATGTAAAGATTATATTTTAATAACATCTCAGGCTTGTTCGAGGGATTATCCCTAACAGAACTTGCTTAAGGCTGTTTTTGTCATTGTTGCCTCTATTTAGTGTATTATACTATAACTATAAGCTAACTAGCCTTCCTTCTACAGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGGTATGCTCATTTAGGTCATTTCCATTTCTAGACATGGAGTATTTTGGTGGGTTTATATAAATCGTGCTTCTACATTTTTCTAATGGGTAAATTGATATTGTGCAGAATCGGAAGAGGGTTGATTTGCTGATTCAACGCGACTTGACTGCTTGTCAATAGAAGTGATACTCCAAATGCGATCATCTCGACCATCGTTTTACTTTTACCTGATGTACTTTCAACCTTCTTGTCTTGTAATCTAACCTTTTGATTACTTCTTAAAAGTTACTCTTACGTGTATAACTATAAACTAGTGTGTTTTAACTCCAAGGAACGAGCATGTACAAACACGCAATTGCTCCACTAGATTATTGTTCATTGTTATTTGTTACGAAAGTTGACGTTGGATTAAAG

mRNA sequence

ATGGCAAGGCGAAAGGCGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTATACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAAACTTCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAACTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGAATGCGATCTTTCAATGGATTCGAATTTTCCAGTAAATCAGTGAAAACGAATCCTTTCATTGTCGAGAACCTGCAAATTCCAAACTTTGTTTTGGAGGAGCCCTCGGATAATTTGGTGCTCGGCATGCCAGACATACACCAAACTCCTGGGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGAATCGGAAGAGGGTTGA

Coding sequence (CDS)

ATGGCAAGGCGAAAGGCGAAGAAAACGGTTAAGAAGTCCAGCCCTTCACCTATACTAGAAGCAAAGGATGAAGCAGCGAATGACGAGGATGTTGAACGGCATGCTGCTGCAATCCGTGCCATTCGGGATGTGGAGATCGGGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACAAGGAGCAATTGCAAACTCCTTTATTGCAATTCTTCGAAGAAAAACTTCCTAGGTTGTCTATTTCGAGAACAGGCGAACAAGGAGAAATTGAAGTACAATGGAAGGATACAGAGGATGAACTACGCACCAATCCAGCTGATGGAATAGATATACATGCGTCTCTCCTTCACCGCCTGTCGATAGCTTATCCTAACTGCTCTGCCGGAATGCGATCTTTCAATGGATTCGAATTTTCCAGTAAATCAGTGAAAACGAATCCTTTCATTGTCGAGAACCTGCAAATTCCAAACTTTGTTTTGGAGGAGCCCTCGGATAATTTGGTGCTCGGCATGCCAGACATACACCAAACTCCTGGGGTGAGTAACCAACGATTATCCATTGGGATGACTCCGAAAACCCGAAGACTGCCAAAACCAGGCGAGATGCTTGTGTCCATCCATGGATCCCCCTTGGGTGTTTACAAGGAAGACAACATGGAAGCAATCCATGAATCGGAAGAGGGTTGA

Protein sequence

MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG

Homology

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BLAST of CsaV3_6G045820 vs. NCBI nr
Match: XP_004143493.1 (PREDICTED: uncharacterized protein LOC101215210 [Cucumis sativus] >KGN48787.1 hypothetical protein Csa_6G501280 [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 4.9e-121
Identity = 227/229 (99.13%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
           MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEI RLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
           SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

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BLAST of CsaV3_6G045820 vs. NCBI nr
Match: XP_008440665.1 (PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo])

HSP 1 Score: 436.0 bits (1120), Expect = 7.8e-119
Identity = 222/229 (96.94%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
           MARRKAKKTVKKS+PSP+LEAKDE ANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
           SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNF LEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VINQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

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BLAST of CsaV3_6G045820 vs. NCBI nr
Match: XP_023543921.1 (uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.9 bits (1034), Expect = 7.3e-109
Identity = 209/241 (86.72%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAAN------------DEDVERHAAAIRAIRDVEIGR 60
           MARRKAKK+VKKSSPSP+ EAKD +AN            DEDVERHA AIRAIRDVEI R
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFFEEKLP LSISR GEQGEIEVQWK+TEDEL TNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPSLSISRRGEQGEIEVQWKNTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNL 180
           GIDIHASLLHRLS AYPNCSAGMRSFNGFEFSSKSVKTNPF VENLQIPNF LEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGMRSFNGFEFSSKSVKTNPFNVENLQIPNFALEEPSDNM 180

Query: 181 VLGMPDIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 230
           VLGMPD+ QTPGVSNQRLSIGMTPKTRRLPKPGE+LVSIHGSPLGVY+E+NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGVSNQRLSIGMTPKTRRLPKPGEVLVSIHGSPLGVYREENMEAIHESEE 240

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BLAST of CsaV3_6G045820 vs. NCBI nr
Match: XP_016900279.1 (PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 2.1e-108
Identity = 210/235 (89.36%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAA------NDEDVERHAAAIRAIRDVEIGRLITELR 60
           MARRKAKKTVKKSSPS    AKDEAA      +DEDVERHAAAIRAIRDVEI RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLP LSIS  G+QGEIEVQWKDTEDEL TNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPD 180
           SLLHRLS AYP CSAGMRSFNGFEFSSKSVKTNPF  ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 IHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           I QTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 235

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BLAST of CsaV3_6G045820 vs. NCBI nr
Match: XP_022978547.1 (uncharacterized protein LOC111478496 [Cucurbita maxima])

HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106
Identity = 206/240 (85.83%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAAN------------DEDVERHAAAIRAIRDVEIGR 60
           MARRKAKK+VKKSSPSP+ EAKD +AN            DEDVERHA AIRAIRDVEI R
Sbjct: 1   MARRKAKKSVKKSSPSPVREAKDGSANELKSEDQASLVSDEDVERHATAIRAIRDVEIER 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           LITELRLLRSYFNKEQLQTPLLQFF EKLP LSISR GEQGEIEVQWKDTEDEL TNPAD
Sbjct: 61  LITELRLLRSYFNKEQLQTPLLQFFVEKLPSLSISRRGEQGEIEVQWKDTEDELHTNPAD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNL 180
           GIDIHASLLHRLS AYPNCSAG+RSFNGFEFSSKSVKTNPF VENLQIPNFVLEEPSDN+
Sbjct: 121 GIDIHASLLHRLSTAYPNCSAGIRSFNGFEFSSKSVKTNPFNVENLQIPNFVLEEPSDNM 180

Query: 181 VLGMPDIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 229
           VLGMPD+ QTPG SNQRLSIGMTPKTRRLPKPGE++VSIHGSPLGVY+E NMEAIHESEE
Sbjct: 181 VLGMPDLLQTPGASNQRLSIGMTPKTRRLPKPGEVIVSIHGSPLGVYREYNMEAIHESEE 240

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BLAST of CsaV3_6G045820 vs. TAIR10
Match: AT4G39630.1 (unknown protein)

HSP 1 Score: 154.5 bits (389), Expect = 8.2e-38
Identity = 99/232 (42.67%), Postives = 132/232 (56.90%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSP------ILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELR 60
           M +RKAK+ VK +           +E K E   DE+VER  AAIR               
Sbjct: 1   MPKRKAKECVKLTEEDRNDEKRIRIEEKKEDFVDEEVERQIAAIRXXXXXXXXXXXXXXX 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
                     L TP+L FF+E LP LSISR  E GEIE++W+D   +      +G+D++ 
Sbjct: 61  XXXXXXXXXXLHTPVLDFFKENLPDLSISRNEETGEIELKWRDENGDSFAGNENGVDMNY 120

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPD 180
           S+L RLS+ + +  +   S  G++    +VK N    +N Q+ N V +  S+N +L   D
Sbjct: 121 SILKRLSMRFTDLYS-RSSLGGYDLPD-NVKANLLGTDNPQLDNLVFQGTSENQMLPGHD 180

Query: 181 IHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIHE 226
             QTPGV+ QRLS GMTPKT RLPK GEM++S+HGSPLGVYKED NM AI+E
Sbjct: 181 AFQTPGVNGQRLSFGMTPKTLRLPKAGEMMLSVHGSPLGVYKEDHNMGAINE 230

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BLAST of CsaV3_6G045820 vs. TrEMBL
Match: tr|A0A0A0KK81|A0A0A0KK81_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 3.2e-121
Identity = 227/229 (99.13%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
           MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEI RLIT LRLLRSYF
Sbjct: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIERLITVLRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
           SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

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BLAST of CsaV3_6G045820 vs. TrEMBL
Match: tr|A0A1S3B1M1|A0A1S3B1M1_CUCME (uncharacterized protein LOC103485008 OS=Cucumis melo OX=3656 GN=LOC103485008 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 5.1e-119
Identity = 222/229 (96.94%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60
           MARRKAKKTVKKS+PSP+LEAKDE ANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF
Sbjct: 1   MARRKAKKTVKKSNPSPVLEAKDETANDEDVERHAAAIRAIRDVEIGRLITELRLLRSYF 60

Query: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120
           NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL
Sbjct: 61  NKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHASLLHRL 120

Query: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPDIHQTPG 180
           SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNF LEEPSDN+VLGMPDI QTPG
Sbjct: 121 SIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFDLEEPSDNMVLGMPDILQTPG 180

Query: 181 VSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           V NQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 VINQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 229

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BLAST of CsaV3_6G045820 vs. TrEMBL
Match: tr|A0A1S4DWB9|A0A1S4DWB9_CUCME (uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.4e-108
Identity = 210/235 (89.36%), Postives = 215/235 (91.49%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAA------NDEDVERHAAAIRAIRDVEIGRLITELR 60
           MARRKAKKTVKKSSPS    AKDEAA      +DEDVERHAAAIRAIRDVEI RLITELR
Sbjct: 1   MARRKAKKTVKKSSPSSGRHAKDEAADKIKTHSDEDVERHAAAIRAIRDVEIERLITELR 60

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLP LSIS  G+QGEIEVQWKDTEDEL TNPADG+DIHA
Sbjct: 61  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGDQGEIEVQWKDTEDELHTNPADGVDIHA 120

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPD 180
           SLLHRLS AYP CSAGMRSFNGFEFSSKSVKTNPF  ENLQIPNFVLEEPSDN+VLGMPD
Sbjct: 121 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDNMVLGMPD 180

Query: 181 IHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           I QTPG+SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 181 ILQTPGISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 235

[Close]

BLAST of CsaV3_6G045820 vs. TrEMBL
Match: tr|A0A0A0KRH4|A0A0A0KRH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 9.4e-105
Identity = 207/240 (86.25%), Postives = 213/240 (88.75%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPILEAKDEAAN------DEDVERHAAAIRAIRDVEIGRLITELR 60
           MARRKAKKTVKKSSPS   +AKDEA N      DEDVERHAAAIRAIRDVEI RLIT LR
Sbjct: 3   MARRKAKKTVKKSSPSSGRDAKDEAVNKLKTDSDEDVERHAAAIRAIRDVEIERLITVLR 62

Query: 61  LLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPADGIDIHA 120
           LLRSYFNKEQLQTPLLQFFEEKLP LSIS  G+QGEIEV+WKDTEDEL TNPADG+DIHA
Sbjct: 63  LLRSYFNKEQLQTPLLQFFEEKLPSLSISIRGKQGEIEVRWKDTEDELHTNPADGVDIHA 122

Query: 121 SLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNLVLGMPD 180
           SLLHRLS AYP CSAGMRSFNGFEFSSKSVKTNPF  ENLQIPNFVLEEPSD++ LGMPD
Sbjct: 123 SLLHRLSTAYPYCSAGMRSFNGFEFSSKSVKTNPFNAENLQIPNFVLEEPSDDMTLGMPD 182

Query: 181 IHQTPGV-----SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 230
           I QTPGV     SNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG
Sbjct: 183 IVQTPGVRIFMISNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEEG 242

[Close]

BLAST of CsaV3_6G045820 vs. TrEMBL
Match: tr|A0A2R6R6B0|A0A2R6R6B0_ACTCH (Dipeptidase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10575 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.6e-70
Identity = 145/241 (60.17%), Postives = 182/241 (75.52%), Query Frame = 0


Query: 1   MARRKAKKTVKKSSPSPI------------LEAKDEAANDEDVERHAAAIRAIRDVEIGR 60
           MA+RK K+TVK+S+ SP+            +  K++A  D +VER +AAIR +RDVEI  
Sbjct: 1   MAKRKVKRTVKQSASSPLSNKNRAGPKEPPISDKEDAFRDLEVERRSAAIRGMRDVEIDH 60

Query: 61  LITELRLLRSYFNKEQLQTPLLQFFEEKLPRLSISRTGEQGEIEVQWKDTEDELRTNPAD 120
           L+T LRLLRSYF +EQLQTP+LQFFEE LP LS+ R G+ G+ EVQWKD +  L  N  D
Sbjct: 61  LLTGLRLLRSYFRQEQLQTPVLQFFEENLPNLSVVRNGKDGQYEVQWKDKDGNLSMNQVD 120

Query: 121 GIDIHASLLHRLSIAYPNCSAGMRSFNGFEFSSKSVKTNPFIVENLQIPNFVLEEPSDNL 180
           G +IH+SLLHR+SIAYPNCSA + SF+GF+ SSK  K +    +NLQI +FVLEEPSD  
Sbjct: 121 GRNIHSSLLHRMSIAYPNCSA-IPSFSGFD-SSKDEKASLLGADNLQIRDFVLEEPSDTY 180

Query: 181 VLGMPDIHQTPGVSNQRLSIGMTPKTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIHESEE 230
           +LG+ D  QTPG ++ R+S+GMTPKT RLPKPGEML+S+HGSPLGVYKE+NME+I ESEE
Sbjct: 181 MLGLQDALQTPGATSHRMSVGMTPKTLRLPKPGEMLLSVHGSPLGVYKEENMESIQESEE 239

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143493.1	4.9e-121	99.13	PREDICTED: uncharacterized protein LOC101215210 [Cucumis sativus] >KGN48787.1 hy...	[more]
XP_008440665.1	7.8e-119	96.94	PREDICTED: uncharacterized protein LOC103485008 [Cucumis melo]	[more]
XP_023543921.1	7.3e-109	86.72	uncharacterized protein LOC111803645 [Cucurbita pepo subsp. pepo]	[more]
XP_016900279.1	2.1e-108	89.36	PREDICTED: uncharacterized protein LOC103489436 [Cucumis melo]	[more]
XP_022978547.1	1.2e-106	85.83	uncharacterized protein LOC111478496 [Cucurbita maxima]	[more]

BLAST of CsaV3_6G045820 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39630.1	8.2e-38	42.67	unknown protein	[more]

BLAST of CsaV3_6G045820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G045820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KK81\|A0A0A0KK81_CUCSA	3.2e-121	99.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501280 PE=4 SV=1	[more]
tr\|A0A1S3B1M1\|A0A1S3B1M1_CUCME	5.1e-119	96.94	uncharacterized protein LOC103485008 OS=Cucumis melo OX=3656 GN=LOC103485008 PE=...	[more]
tr\|A0A1S4DWB9\|A0A1S4DWB9_CUCME	1.4e-108	89.36	uncharacterized protein LOC103489436 OS=Cucumis melo OX=3656 GN=LOC103489436 PE=...	[more]
tr\|A0A0A0KRH4\|A0A0A0KRH4_CUCSA	9.4e-105	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622550 PE=4 SV=1	[more]
tr\|A0A2R6R6B0\|A0A2R6R6B0_ACTCH	2.6e-70	60.17	Dipeptidase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10575 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:1903047	mitotic cell cycle process
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0044271	cellular nitrogen compound biosynthetic process
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0016569	chromatin modification
biological_process	GO:0016458	gene silencing
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0019219	regulation of nucleobase-containing compound metabolic process
biological_process	GO:1902589	single-organism organelle organization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045820.1	CsaV3_6G045820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR37248	FAMILY NOT NAMED	coord: 1..229

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_6G045820	CSPI06G30600	Wild cucumber (PI 183967)	cpicucB363
CsaV3_6G045820	Cucsa.104730	Cucumber (Gy14) v1	cgycucB126
CsaV3_6G045820	CmaCh03G007840	Cucurbita maxima (Rimu)	cmacucB0809
CsaV3_6G045820	CmaCh07G005150	Cucurbita maxima (Rimu)	cmacucB1035
CsaV3_6G045820	CmoCh03G008180	Cucurbita moschata (Rifu)	cmocucB0793
CsaV3_6G045820	CmoCh07G005100	Cucurbita moschata (Rifu)	cmocucB1019
CsaV3_6G045820	Cp4.1LG10g01060	Cucurbita pepo (Zucchini)	cpecucB0092
CsaV3_6G045820	Cp4.1LG19g09490	Cucurbita pepo (Zucchini)	cpecucB0618
CsaV3_6G045820	CsGy6G030060	Cucumber (Gy14) v2	cgybcucB298
CsaV3_6G045820	Carg00669	Silver-seed gourd	carcucB0442
CsaV3_6G045820	Carg16025	Silver-seed gourd	carcucB0797
CsaV3_6G045820	Cla014177	Watermelon (97103) v1	cucwmB526
CsaV3_6G045820	MELO3C007790	Melon (DHL92) v3.5.1	cucmeB517
CsaV3_6G045820	ClCG01G019130	Watermelon (Charleston Gray)	cucwcgB455
CsaV3_6G045820	Lsi01G007240	Bottle gourd (USVL1VR-Ls)	cuclsiB462
CsaV3_6G045820	MELO3C007790.2	Melon (DHL92) v3.6.1	cucmedB505
CsaV3_6G045820	Cla97C01G018600	Watermelon (97103) v2	cucwmbB430
CsaV3_6G045820	Bhi03G000953	Wax gourd	cucwgoB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None