Cucsa.382150 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.382150
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP synthase E chain
Location	scaffold03866 : 235207 .. 236419 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTATGTTTTTCTTTATTTCCCATCGTTTTCACTAATTTTTCGGTCTATACATTTCATGTTGCCATTGCTATTTGTGGATCTGACTTTGATTCAATACTCGAATTTAATGTTCATATTCAACGTTTTTTTACCCTTCTCCTTCTCAGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTCATCTGGGATCTATTTCTGTTTGCTTGTTTTTCTCGACAATCTTGGATTTGTTTCGATTACAGATGTAGATGCAGGACATATTTTTAGGGCCAATCTGAATGTCTCTGTGCTTTGAGATTAGTTTCAAGTGTATTCTTCAAGAATTTTTATTTCTATTTATAAGACCCGAAGTCTTTAGATTGATTCAAATATGCCGTTTGAGAATTTTACCTTTAAAAAGAGTTATGAAAATTGATGCGGTCTGGCTGCTTAGTTGTTAGAGTAAATTCGCAGACATGGCTTTTATAAAAATGAAGGGCCACAATGTAGTTTGAACAAATGATGGTCTTGGTTAATTTATCATTTTGAAATTTATATTTTGAACTTTTTTTTTTCTTGAAGCACAATTCGTCTATTTATGTTTACATAATATTTGATAACTATATTAAAATAGATTATTTGGTCTAAATGTCTAATGCCGTGAAAGGATCAATTGTTTTTAATGGGCTGTCAAACTTCTTTGAACTTGGAGATCATGGAATGAAATTATTTTCAAAGTTCGAACATAGAGTTTGGTTTGTGAACCATGGTAAATATGCTTGGTCTAGGACTTCATTTGTGAAATTCCATTAATATACTCAATGACGACCAATGGTTTAGTCTTCTACTTCTAGTTTCATTCCTTTTCAATTTCAGTTTGACTTATAGGAATTGTGCTCTTACAATCTCATGTTATTTCTAGCTGTCTTTTGAGGCCATTCTAAATGCACCTGTCTGATTTTAGAATTTTATTTCCGTTACTATTCTATCACCACAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

mRNA sequence

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

Coding sequence (CDS)

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

Protein sequence

SNSLGLLASSNRLLLLPKFSFVLLLCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH*

Homology

[Close]

BLAST of Cucsa.382150 vs. TrEMBL
Match: A0A0A0K2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. TrEMBL
Match: U5G0T9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s12870g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 25 LCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAE--A 84
          L FP ++P MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAE  A
Sbjct: 20 LLFPEESP-MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKA 79

Query: 85 KAHH 87
          KAHH
Sbjct: 80 KAHH 82

[Close]

BLAST of Cucsa.382150 vs. TrEMBL
Match: A0A061E0I0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006763 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-17
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK+L+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSMKLKFLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. TrEMBL
Match: I1LPW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G036000 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKAKSH+KA+ KAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSHQKAQEKAHH 53

[Close]

BLAST of Cucsa.382150 vs. TrEMBL
Match: A0A0D2NDR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G244100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKA+S +KAEAKAHH
Sbjct: 1  MASPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKARSQRKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. TAIR10
Match: AT3G01130.1 (AT3G01130.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPG YSGTSTLALVARASAF +GL+YG++KLK L+ K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. TAIR10
Match: AT5G15320.1 (AT5G15320.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          M LPPG YSGTS+LALVARASAF +GLVYG++KLK L+ K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Cucsa.382150 vs. NCBI nr
Match: gi|659094364|ref|XP_008448021.1| (PREDICTED: uncharacterized protein LOC103490330 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. NCBI nr
Match: gi|743884256|ref|XP_011037235.1| (PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. NCBI nr
Match: gi|1009149095|ref|XP_015892295.1| (PREDICTED: uncharacterized protein LOC107426588 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150 vs. NCBI nr
Match: gi|566187716|ref|XP_006379266.1| (hypothetical protein POPTR_0009s12870g, partial [Populus trichocarpa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 25 LCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAE--A 84
          L FP ++P MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAE  A
Sbjct: 20 LLFPEESP-MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKA 79

Query: 85 KAHH 87
          KAHH
Sbjct: 80 KAHH 82

[Close]

BLAST of Cucsa.382150 vs. NCBI nr
Match: gi|590685060|ref|XP_007042000.1| (Uncharacterized protein TCM_006763 [Theobroma cacao])

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-17
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK+L+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSMKLKFLKAKAKSQKKAEAKAHH 53

The following BLAST results are available for this feature:

BLAST of Cucsa.382150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2E7_CUCSA	1.5e-20	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1	[more]
U5G0T9_POPTR	2.0e-17	81.25	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s12870g P...	[more]
A0A061E0I0_THECC	4.4e-17	88.68	Uncharacterized protein OS=Theobroma cacao GN=TCM_006763 PE=4 SV=1	[more]
I1LPW2_SOYBN	4.4e-17	86.79	Uncharacterized protein OS=Glycine max GN=GLYMA_12G036000 PE=4 SV=1	[more]
A0A0D2NDR3_GOSRA	5.8e-17	86.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G244100 PE=4 SV=1	[more]

BLAST of Cucsa.382150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01130.1	2.8e-15	73.58	unknown protein	[more]
AT5G15320.1	2.8e-15	71.70	unknown protein	[more]

BLAST of Cucsa.382150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094364\|ref\|XP_008448021.1\|	2.1e-20	100.00	PREDICTED: uncharacterized protein LOC103490330 [Cucumis melo]	[more]
gi\|743884256\|ref\|XP_011037235.1\|	1.7e-17	90.57	PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]	[more]
gi\|1009149095\|ref\|XP_015892295.1\|	2.2e-17	90.57	PREDICTED: uncharacterized protein LOC107426588 [Ziziphus jujuba]	[more]
gi\|566187716\|ref\|XP_006379266.1\|	2.8e-17	81.25	hypothetical protein POPTR_0009s12870g, partial [Populus trichocarpa]	[more]
gi\|590685060\|ref\|XP_007042000.1\|	6.3e-17	88.68	Uncharacterized protein TCM_006763 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008386	ATP_synth_F0_esu_mt

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.382150.1	Cucsa.382150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008386	ATPase, F0 complex, subunit E, mitochondrial	PFAM	PF05680	ATP-synt_E	coord: 45..84 score: 1.
None	No IPR available	PANTHER	PTHR36028	FAMILY NOT NAMED	coord: 8..86 score: 2.6
None	No IPR available	PANTHER	PTHR36028:SF1	SUBFAMILY NOT NAMED	coord: 8..86 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.382150	Csa7G007920	Cucumber (Chinese Long) v2	cgycuB535
Cucsa.382150	ClCG02G004430	Watermelon (Charleston Gray)	cgywcgB652
Cucsa.382150	CSPI07G00530	Wild cucumber (PI 183967)	cgycpiB564
Cucsa.382150	CmaCh19G007060	Cucurbita maxima (Rimu)	cgycmaB1051
Cucsa.382150	CmoCh19G007150	Cucurbita moschata (Rifu)	cgycmoB1050
Cucsa.382150	Lsi11G011530	Bottle gourd (USVL1VR-Ls)	cgylsiB618
Cucsa.382150	Cp4.1LG15g05650	Cucurbita pepo (Zucchini)	cgycpeB1004
Cucsa.382150	MELO3C013404.2	Melon (DHL92) v3.6.1	cgymedB618
Cucsa.382150	CsaV3_7G000550	Cucumber (Chinese Long) v3	cgycucB580
Cucsa.382150	Cla97C02G031380	Watermelon (97103) v2	cgywmbB656
Cucsa.382150	Bhi05G001529	Wax gourd	cgywgoB760

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.382150	Silver-seed gourd	carcgyB0373
Cucsa.382150	Melon (DHL92) v3.5.1	cgymeB622
Cucsa.382150	Watermelon (97103) v1	cgywmB688