Cucsa.382150.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.382150.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ATP synthase E chain
Location	scaffold03866 : 235207 .. 236419 (-)
Sequence length	263

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTATGTTTTTCTTTATTTCCCATCGTTTTCACTAATTTTTCGGTCTATACATTTCATGTTGCCATTGCTATTTGTGGATCTGACTTTGATTCAATACTCGAATTTAATGTTCATATTCAACGTTTTTTTACCCTTCTCCTTCTCAGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTCATCTGGGATCTATTTCTGTTTGCTTGTTTTTCTCGACAATCTTGGATTTGTTTCGATTACAGATGTAGATGCAGGACATATTTTTAGGGCCAATCTGAATGTCTCTGTGCTTTGAGATTAGTTTCAAGTGTATTCTTCAAGAATTTTTATTTCTATTTATAAGACCCGAAGTCTTTAGATTGATTCAAATATGCCGTTTGAGAATTTTACCTTTAAAAAGAGTTATGAAAATTGATGCGGTCTGGCTGCTTAGTTGTTAGAGTAAATTCGCAGACATGGCTTTTATAAAAATGAAGGGCCACAATGTAGTTTGAACAAATGATGGTCTTGGTTAATTTATCATTTTGAAATTTATATTTTGAACTTTTTTTTTTCTTGAAGCACAATTCGTCTATTTATGTTTACATAATATTTGATAACTATATTAAAATAGATTATTTGGTCTAAATGTCTAATGCCGTGAAAGGATCAATTGTTTTTAATGGGCTGTCAAACTTCTTTGAACTTGGAGATCATGGAATGAAATTATTTTCAAAGTTCGAACATAGAGTTTGGTTTGTGAACCATGGTAAATATGCTTGGTCTAGGACTTCATTTGTGAAATTCCATTAATATACTCAATGACGACCAATGGTTTAGTCTTCTACTTCTAGTTTCATTCCTTTTCAATTTCAGTTTGACTTATAGGAATTGTGCTCTTACAATCTCATGTTATTTCTAGCTGTCTTTTGAGGCCATTCTAAATGCACCTGTCTGATTTTAGAATTTTATTTCCGTTACTATTCTATCACCACAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

mRNA sequence

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

Coding sequence (CDS)

CTTCAAATTCCTTAGGGCTCCTCGCTTCTTCTAATCGGCTTCTACTTCTACCAAAATTTTCATTCGTTCTTCTTCTCTGCTTCCCTTTGCAAAATCCTTTCATGGCACTTCCTCCAGGCCCCTATTCTGGAACTAGCACTCTCGCCTTGGTTGCTCGTGCTTCGGCGTTCTCTGTTGGACTTGTCTACGGGAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAGGCTCATCACTGA

Protein sequence

SNSLGLLASSNRLLLLPKFSFVLLLCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH*

Homology

[Close]

BLAST of Cucsa.382150.1 vs. TrEMBL
Match: A0A0A0K2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. TrEMBL
Match: U5G0T9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s12870g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-17
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 25 LCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAE--A 84
          L FP ++P MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAE  A
Sbjct: 20 LLFPEESP-MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKA 79

Query: 85 KAHH 87
          KAHH
Sbjct: 80 KAHH 82

[Close]

BLAST of Cucsa.382150.1 vs. TrEMBL
Match: A0A061E0I0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006763 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-17
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK+L+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSMKLKFLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. TrEMBL
Match: I1LPW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G036000 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKAKSH+KA+ KAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSHQKAQEKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. TrEMBL
Match: A0A0D2NDR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G244100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.8e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKA+S +KAEAKAHH
Sbjct: 1  MASPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKARSQRKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. TAIR10
Match: AT3G01130.1 (AT3G01130.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPG YSGTSTLALVARASAF +GL+YG++KLK L+ K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. TAIR10
Match: AT5G15320.1 (AT5G15320.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-15
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          M LPPG YSGTS+LALVARASAF +GLVYG++KLK L+ K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. NCBI nr
Match: gi|659094364|ref|XP_008448021.1| (PREDICTED: uncharacterized protein LOC103490330 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. NCBI nr
Match: gi|743884256|ref|XP_011037235.1| (PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. NCBI nr
Match: gi|1009149095|ref|XP_015892295.1| (PREDICTED: uncharacterized protein LOC107426588 [Ziziphus jujuba])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLKYL+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of Cucsa.382150.1 vs. NCBI nr
Match: gi|566187716|ref|XP_006379266.1| (hypothetical protein POPTR_0009s12870g, partial [Populus trichocarpa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-17
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1


Query: 25 LCFPLQNPFMALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAE--A 84
          L FP ++P MA PPGPYSGTSTLALVAR SAFS+GLVYGS+KLKYLQAKAKS KKAE  A
Sbjct: 20 LLFPEESP-MAPPPGPYSGTSTLALVARVSAFSLGLVYGSVKLKYLQAKAKSQKKAEAKA 79

Query: 85 KAHH 87
          KAHH
Sbjct: 80 KAHH 82

[Close]

BLAST of Cucsa.382150.1 vs. NCBI nr
Match: gi|590685060|ref|XP_007042000.1| (Uncharacterized protein TCM_006763 [Theobroma cacao])

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-17
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 34 MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 87
          MA PPGPYSGTSTLALVARASAFS GLVYGS+KLK+L+AKAKS KKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSMKLKFLKAKAKSQKKAEAKAHH 53

The following BLAST results are available for this feature:

BLAST of Cucsa.382150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2E7_CUCSA	1.5e-20	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007920 PE=4 SV=1	[more]
U5G0T9_POPTR	2.0e-17	81.25	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s12870g P...	[more]
A0A061E0I0_THECC	4.4e-17	88.68	Uncharacterized protein OS=Theobroma cacao GN=TCM_006763 PE=4 SV=1	[more]
I1LPW2_SOYBN	4.4e-17	86.79	Uncharacterized protein OS=Glycine max GN=GLYMA_12G036000 PE=4 SV=1	[more]
A0A0D2NDR3_GOSRA	5.8e-17	86.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G244100 PE=4 SV=1	[more]

BLAST of Cucsa.382150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01130.1	2.8e-15	73.58	unknown protein	[more]
AT5G15320.1	2.8e-15	71.70	unknown protein	[more]

BLAST of Cucsa.382150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094364\|ref\|XP_008448021.1\|	2.1e-20	100.00	PREDICTED: uncharacterized protein LOC103490330 [Cucumis melo]	[more]
gi\|743884256\|ref\|XP_011037235.1\|	1.7e-17	90.57	PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]	[more]
gi\|1009149095\|ref\|XP_015892295.1\|	2.2e-17	90.57	PREDICTED: uncharacterized protein LOC107426588 [Ziziphus jujuba]	[more]
gi\|566187716\|ref\|XP_006379266.1\|	2.8e-17	81.25	hypothetical protein POPTR_0009s12870g, partial [Populus trichocarpa]	[more]
gi\|590685060\|ref\|XP_007042000.1\|	6.3e-17	88.68	Uncharacterized protein TCM_006763 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008386	ATP_synth_F0_esu_mt

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.382150	Cucsa.382150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.382150.1	Cucsa.382150.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.382150.1.CDS.3	Cucsa.382150.1.CDS.3	CDS
Cucsa.382150.1.CDS.2	Cucsa.382150.1.CDS.2	CDS
Cucsa.382150.1.CDS.1	Cucsa.382150.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008386	ATPase, F0 complex, subunit E, mitochondrial	PFAM	PF05680	ATP-synt_E	coord: 45..84 score: 1.
None	No IPR available	PANTHER	PTHR36028	FAMILY NOT NAMED	coord: 8..86 score: 2.6
None	No IPR available	PANTHER	PTHR36028:SF1	SUBFAMILY NOT NAMED	coord: 8..86 score: 2.6