Cucsa.377760 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.377760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBnaA01g05330D protein
Locationscaffold03806 : 245805 .. 246363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTCATCCATATACGTTTTTATGTAAATTCTTCCAATAATTATGTGCCTAATTTTTCACTATTCAAATATTCTTTTTtATTTGAATCTATTTTTAGTTAGCATCTACTTTTGCAGAAGCTTACGTAATAGTAAAATCACATTTTGTGATCAAGTGACAATTTTTTTTtATTATTATTATTCTTTCGAGTTTTAACCAACACTTCAAACATAGACGTTAGATATTACACAATCGTTTATAACAATAATGTTATTTGTTGGTGTTTTGAGTATAGGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCccTTCATTGCCACATGA

mRNA sequence

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Coding sequence (CDS)

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCccTTCATTGCCACATGA

Protein sequence

MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT*
Homology
[Close]
BLAST of Cucsa.377760 vs. TrEMBL
Match: A0A0A0K2B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]
BLAST of Cucsa.377760 vs. TrEMBL
Match: A0A061E0R1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]
BLAST of Cucsa.377760 vs. TrEMBL
Match: M5VHW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011560mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]
BLAST of Cucsa.377760 vs. TrEMBL
Match: W9S8L8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027415 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-25
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHP-DAKK 60
          M+ +  ++M+FDMGSLRTNLP KRGLSRYYSGK+RSF C+ADV +VEDLKKP+HP DAKK
Sbjct: 1  MKTESENVMSFDMGSLRTNLPMKRGLSRYYSGKSRSFTCMADVHNVEDLKKPEHPQDAKK 60

Query: 61 RKKHSDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          RKK+S+  + ++NV PP+ CRRVSS   C+ P +
Sbjct: 61 RKKYSERNKELLNVIPPYPCRRVSSTNQCATPCV 94

[Close]
BLAST of Cucsa.377760 vs. TrEMBL
Match: A0A151TCX4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_019525 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1 

Query: 9  MAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKE 68
          + F+MGSL T+ PQKRGLSRYYSGK+RSFAC+ DV S+EDLKKP+HPDAKKRKKH  +KE
Sbjct: 8  LIFNMGSLGTSFPQKRGLSRYYSGKSRSFACMEDVHSLEDLKKPEHPDAKKRKKHLHMKE 67

Query: 69 IIINVPPFHCRRVS-SHCSVPFI 91
           + N+PP+ CRRVS +  + P++
Sbjct: 68 -LRNLPPYPCRRVSCTQLTTPYV 89

[Close]
BLAST of Cucsa.377760 vs. TAIR10
Match: AT5G24890.1 (AT5G24890.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++ SV+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]
BLAST of Cucsa.377760 vs. TAIR10
Match: AT3G03170.1 (AT3G03170.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1 

Query: 23  KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 82
           +RGLS++Y GK++SF  +A+  +VEDL KP++P   K K+  +           HCRR+S
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP---------HCRRLS 106

[Close]
BLAST of Cucsa.377760 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 47.8 bits (112), Expect = 4.4e-06
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1 

Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+S+EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]
BLAST of Cucsa.377760 vs. NCBI nr
Match: gi|700187921|gb|KGN43154.1| (hypothetical protein Csa_7G004070 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]
BLAST of Cucsa.377760 vs. NCBI nr
Match: gi|659094470|ref|XP_008448077.1| (PREDICTED: uncharacterized protein LOC103490363 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-42
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGN+MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNNMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSD KE I NVPPFHCRR SSHCSVPFIAT
Sbjct: 61 KKHSDCKE-ITNVPPFHCRRASSHCSVPFIAT 91

[Close]
BLAST of Cucsa.377760 vs. NCBI nr
Match: gi|595791483|ref|XP_007199490.1| (hypothetical protein PRUPE_ppb011560mg [Prunus persica])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]
BLAST of Cucsa.377760 vs. NCBI nr
Match: gi|590685432|ref|XP_007042100.1| (Uncharacterized protein TCM_006830 [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]
BLAST of Cucsa.377760 vs. NCBI nr
Match: gi|645262847|ref|XP_008236950.1| (PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 1 

Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRT+LPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTSLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

The following BLAST results are available for this feature:
BLAST of Cucsa.377760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2B1_CUCSA3.7e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004070 PE=4 SV=1[more]
A0A061E0R1_THECC2.1e-2570.65Uncharacterized protein OS=Theobroma cacao GN=TCM_006830 PE=4 SV=1[more]
M5VHW2_PRUPE2.1e-2568.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011560mg PE=4 SV=1[more]
W9S8L8_9ROSA8.0e-2563.83Uncharacterized protein OS=Morus notabilis GN=L484_027415 PE=4 SV=1[more]
A0A151TCX4_CAJCA1.7e-2265.06Uncharacterized protein OS=Cajanus cajan GN=KK1_019525 PE=4 SV=1[more]
BLAST of Cucsa.377760 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24890.12.0e-0642.86 unknown protein[more]
AT3G03170.13.3e-0640.00 unknown protein[more]
AT5G56550.14.4e-0650.00 oxidative stress 3[more]
BLAST of Cucsa.377760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700187921|gb|KGN43154.1|5.3e-46100.00hypothetical protein Csa_7G004070 [Cucumis sativus][more]
gi|659094470|ref|XP_008448077.1|3.6e-4294.57PREDICTED: uncharacterized protein LOC103490363 [Cucumis melo][more]
gi|595791483|ref|XP_007199490.1|3.0e-2568.13hypothetical protein PRUPE_ppb011560mg [Prunus persica][more]
gi|590685432|ref|XP_007042100.1|3.0e-2570.65Uncharacterized protein TCM_006830 [Theobroma cacao][more]
gi|645262847|ref|XP_008236950.1|1.1e-2467.03PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.377760.1Cucsa.377760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172FAMILY NOT NAMEDcoord: 11..83
score: 1.5
NoneNo IPR availablePANTHERPTHR33172:SF7SUBFAMILY NOT NAMEDcoord: 11..83
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.377760Cla015905Watermelon (97103) v1cgywmB679
Cucsa.377760Csa7G004070Cucumber (Chinese Long) v2cgycuB528
Cucsa.377760ClCG02G004770Watermelon (Charleston Gray)cgywcgB643
Cucsa.377760CSPI07G00180Wild cucumber (PI 183967)cgycpiB557
Cucsa.377760Lsi11G011230Bottle gourd (USVL1VR-Ls)cgylsiB610
Cucsa.377760MELO3C029051.2Melon (DHL92) v3.6.1cgymedB609
Cucsa.377760CsaV3_7G000150Cucumber (Chinese Long) v3cgycucB572
Cucsa.377760Cla97C02G031750Watermelon (97103) v2cgywmbB647
Cucsa.377760Carg24679Silver-seed gourdcarcgyB0215
Cucsa.377760Carg19397Silver-seed gourdcarcgyB0372
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.377760Melon (DHL92) v3.6.1cgymedB608
Cucsa.377760Silver-seed gourdcarcgyB1100
Cucsa.377760Cucumber (Chinese Long) v3cgycucB571
Cucsa.377760Watermelon (97103) v2cgywmbB646
Cucsa.377760Wax gourdcgywgoB753
Cucsa.377760Wax gourdcgywgoB754
Cucsa.377760Cucumber (Gy14) v1cgycgyB058
Cucsa.377760Cucurbita maxima (Rimu)cgycmaB1037
Cucsa.377760Cucurbita maxima (Rimu)cgycmaB1038
Cucsa.377760Cucurbita maxima (Rimu)cgycmaB1039
Cucsa.377760Cucurbita maxima (Rimu)cgycmaB1040
Cucsa.377760Cucurbita moschata (Rifu)cgycmoB1036
Cucsa.377760Cucurbita moschata (Rifu)cgycmoB1037
Cucsa.377760Cucurbita moschata (Rifu)cgycmoB1038
Cucsa.377760Cucurbita moschata (Rifu)cgycmoB1039
Cucsa.377760Wild cucumber (PI 183967)cgycpiB556
Cucsa.377760Cucumber (Chinese Long) v2cgycuB527
Cucsa.377760Melon (DHL92) v3.5.1cgymeB611
Cucsa.377760Melon (DHL92) v3.5.1cgymeB612
Cucsa.377760Watermelon (Charleston Gray)cgywcgB642
Cucsa.377760Watermelon (97103) v1cgywmB680
Cucsa.377760Cucurbita pepo (Zucchini)cgycpeB0992
Cucsa.377760Cucurbita pepo (Zucchini)cgycpeB0993
Cucsa.377760Cucurbita pepo (Zucchini)cgycpeB0994
Cucsa.377760Cucurbita pepo (Zucchini)cgycpeB0995
Cucsa.377760Cucurbita pepo (Zucchini)cgycpeB0996
Cucsa.377760Bottle gourd (USVL1VR-Ls)cgylsiB609