Carg24679 (gene) Silver-seed gourd

NameCarg24679
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionConsensus disorder prediction
LocationCucurbita_argyrosperma_scaffold_218 : 119421 .. 122162 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAACTACCTGCACGTGGACAGAAAGACTCTACGAAGCTTCATTGTTCATTGGGATTGGCTTTGGGCCTTTCCTGCACAGCTTAGGTGGAGGGGGAAGAAGGCCCCCTTCCCGAGGGGAGTGGGGAAGCGAGTCATCAGTGAGATACCACTCTGAAAGAGCTAGAATTCTAACCTTGTATCAGGACCTACGGACCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGGCGTAGGCCTCAAGGTAATAGAGGCGTGCAAAGGTTTACTCGGGCCAGACGGAGATTGCCCCTCGAGTGCAAAGGTAGAAGGGAGCTTGACTGAAAGACCCACCCGTCGAGTAGAGACGAAAGTCGGCCTTAGTGATCCGACAGTGCCGAGTGAAAAGGCCATTGCTCAATGGATAAAAGTTACTGTTTTGAAAAATCATTGAAACATTTCTATTTAAAAATACTGAGTAAGTAACACTACTGTTGTGGACAGAAAATGCAATCACATGCAACATGGTTCATGGTGGAATCTACTTTTCATCACTATTATTTGGACTTTACTTTCTTTTTCGAATAGGATTGGACGTATATTACTTTTCTACGACATGATTCATGCATGAATTCACTATGTGGCTCCATATACGTACCTGTAGGCCTCACTATTAGCTAGCACGAATTAGCTAACCAAGGCGAAAACTGAAAATGACTCAAAAGCTGTGCGCAGACAGTCGAGCTGAAATACAAGCCAACTGTAAAGAGGCAACTAATGACGTCACACAGTGACTTGGGAGAGTCGATGTCACGTTGGTGCTAGGGAGGATGGCTCCGTACACACATCTAGGCCTTCGCTTGGACTACACCTCTACTGACATTGAGCTGGACAAACCGTCAAAATGTAGTTCAAACATGTGAGATGTTGTGTTTGTTATTTCAGTCCCGCTTCTAAGAGTTAAACATATTTTGTCCTCATAAAATTGTTCTAAACAAAGCACTCTTAATCTTAAAATTCCTATTTTCATGATCACTCTCATTCGAACGTGGTCACGATTCATTTATGTCTGTCTCTTTAAACCAGATGTCACGTATGTGTACGTGGAGTGGGAAATAACTGGTAATGATATTTCCCAATATATTTTTGGAAGCTTTTTCTCGAATGAAAATCATAATAATAATTATCTCGAATTTGATAGAAAATACTCCTGAAAACAAATGGACTAAATTTTGATTAAAGATGGAGATTAGACTCAAAATACACGAGGTTTTAACCTAATTTTTTACGAGTCAACAGACCATTCGTTCATATTTTCGAACATTTGAATTCAAAAACCATATTTTCGAAACTTGAACGATCGAACAAATGGATGTATAGGAGAAATTGATTCCGTTCCATTAATAAAATAGATTTTTTTTTATTTATTTATATTTTTTTTATTATTTTTTTTTTTTGTGGGAAAATGTTGTATAAATATTTGTGCGTGTTTAGCCACAAAGCCTCCCTCACTCTCTTAATTGAAGGAAATGAAAGATCAAGGAAATAACATGATGGCTTTTGATATGAGTTCTCTTGGGGCAAATCTTCCTCAAAAGTAAGCAATTTTGGCCTACTTTTTTTTGTTAGTTTAATACTTGTTTTACGTCGTTTTGAATGTATAATTACGAGATAGTAGGTTCGAGTTTTTCAATTTTGTTGTGTGACTATCGTGCAAGTATCATGTCGGAACGTTTAAAAAAAACGATGTGATATCTCACATTGGTTGAGGAGAGAACGAAACACCCTTCATAAGGGTGTAGAAACCTTTCCCTAACATACTCGTAATGGAGAAGTCGATAAGGGAAACCCCAAAACCCTTGAGGGGGAAGCTCGAAAGGGAAATCCCAAAAAGGATAGTATCTGGATGAACACCGATTCTACTGTATAACTCTGAAAGACACGTTTTTAAAGGTTTGAGGGTAAGCTCGAAAGGAAATTTTACATTACAAACATAATCTTCCTTTCACGTGGGAAATGAGAAACATAGCCAACGTAGATTACAGTCTTTTTACTATCGTATTTGCATACTCCTCTCGTAACTATTTTCTTTTTGGTTTCCTTTTACGTGGGTAATGAGAAACACAGCCAACGTAGATTACCGTCTTTTTAGTATCGTATTTGCATACTCCTCTCATAACTATTTTCTTTTTGTTTTTTTTTTTATATATATATATTTCATAACTATTTATATATATGACCCAATAACCCGAACTACCTAGATCACCCAATCAAACCCTAAAAATTAAGTTGGGTTAGCTTTTTTTCCTTTTTTCTTTTTTTCCCGGGGTTGGATTAAATTTTTGAAAAACTAAAAAATTCAGTTCGGTTTGTGGGTTAACTTTTTTTTGATTGAGTTAACTCGACCCACTCGAAAATAAGGTTACAACCCAACTCAACCCTATTTTTACGGAAGCGAAAAATATTTAACATTTGTAATCGATGTTAGTGAGACTTGTAAATATTTGATATTTGAATGGGTTGTATAGCTGACGTTGTGGAGTTGGAGTATAGGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA

mRNA sequence

ATGCGAACTACCTGCACGTGGACAGAAAGACTCTACGAAGCTTCATTGTTCATTGGGATTGGCTTTGGGCCTTTCCTGCACAGCTTAGGTGGAGGGGGAAGAAGGCCCCCTTCCCGAGGGGAGTGGGGAAGCGAGTCATCAGTGAGATACCACTCTGAAAGAGCTAGAATTCTAACCTTGTATCAGGACCTACGGACCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGGCGTAGGCCTCAAGGTAATAGAGGCGTGCAAAGGTTTACTCGGGCCAGACGGAGATTGCCCCTCGAGTGCAAAGGTAGAAGGGAGCTTGACTGAAAGACCCACCCGTCGAGTAGAGACGAAAGTCGGCCTTAGTGATCCGACAGTGCCGAGTGAAAAGGCCATTGCTCAATGGATAAAAGTTACTACAGTCGAGCTGAAATACAAGCCAACTGTAAAGAGGCAACTAATGACGTCACACAGTGACTTGGGAGAGTCGATGTCACCTGACGTTGTGGAGTTGGAGTATAGGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA

Coding sequence (CDS)

ATGCGAACTACCTGCACGTGGACAGAAAGACTCTACGAAGCTTCATTGTTCATTGGGATTGGCTTTGGGCCTTTCCTGCACAGCTTAGGTGGAGGGGGAAGAAGGCCCCCTTCCCGAGGGGAGTGGGGAAGCGAGTCATCAGTGAGATACCACTCTGAAAGAGCTAGAATTCTAACCTTGTATCAGGACCTACGGACCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGGCGTAGGCCTCAAGGTAATAGAGGCGTGCAAAGGTTTACTCGGGCCAGACGGAGATTGCCCCTCGAGTGCAAAGGTAGAAGGGAGCTTGACTGAAAGACCCACCCGTCGAGTAGAGACGAAAGTCGGCCTTAGTGATCCGACAGTGCCGAGTGAAAAGGCCATTGCTCAATGGATAAAAGTTACTACAGTCGAGCTGAAATACAAGCCAACTGTAAAGAGGCAACTAATGACGTCACACAGTGACTTGGGAGAGTCGATGTCACCTGACGTTGTGGAGTTGGAGTATAGGAGGGGATTGTCGAGGTACTATTCAGGAAAGGCGAGGTCGTTTGCTTGCATAGCGGATGCTCGATGTGTAGAAGACTTGAAGAAACCAACACATCCAGATGCGAAGAAAAGGAAGAAACATTCTGATTGCAAAGGAATTCATGTTTCTCCTCATCACTGTCGACGAGCTTCATCCACTCATTGTTCTATTCCCTTCTTTGCTTCATGA

Protein sequence

MRTTCTWTERLYEASLFIGIGFGPFLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTLYQDLRTKGQSQVDSFYGGVGLKVIEACKGLLGPDGDCPSSAKVEGSLTERPTRRVETKVGLSDPTVPSEKAIAQWIKVTTVELKYKPTVKRQLMTSHSDLGESMSPDVVELEYRRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKRKKHSDCKGIHVSPHHCRRASSTHCSIPFFAS
BLAST of Carg24679 vs. NCBI nr
Match: PPD93814.1 (hypothetical protein GOBAR_DD09165 [Gossypium barbadense])

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27
Identity = 77/115 (66.96%), Postives = 79/115 (68.70%), Query Frame = 0

Query: 25  FLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTLYQDLRTKGQSQVDSFYGGVGLKVI 84
           FL  L G  RRPPS    G E SVRYHS RARILTL QDLR K QSQ          KV 
Sbjct: 165 FLVGLSGRRRRPPS---GGPEPSVRYHSGRARILTLCQDLRAKEQSQASQ-------KVT 224

Query: 85  EACKGLLGPDGDCPSSAKVEGSLTERPTRRVETKVGLSDPTVPSEKAIAQWIKVT 140
           EACKG LGPDGD  SSAK EGSLT RPTRR   KVGLSDPTVPS +A+AQ IKVT
Sbjct: 225 EACKGFLGPDGDWSSSAKAEGSLTARPTRRAGMKVGLSDPTVPSGRAVAQRIKVT 269

BLAST of Carg24679 vs. NCBI nr
Match: PLY71224.1 (hypothetical protein LSAT_6X14541 [Lactuca sativa])

HSP 1 Score: 127.1 bits (318), Expect = 8.1e-26
Identity = 75/139 (53.96%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 1   MRTTCTWTERLYEASLFIGIGFGPFLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTL 60
           MRTTCTWTER YEASLF GIGF  FL +LGG  RRPPS                      
Sbjct: 5   MRTTCTWTERPYEASLFPGIGFVLFLRNLGGRRRRPPS---------------------- 64

Query: 61  YQDLRTKGQSQVDSFYGGVGLKVIEACKGLLGPDGDCPSSAKVEGSLTERPTRRVETKVG 120
                           GG  LKV E CKG LG +GD PSSAK EGSLT R T R  TKVG
Sbjct: 65  ----------------GGASLKVTEVCKGFLGSNGDWPSSAKAEGSLTARHTLRAGTKVG 105

Query: 121 LSDPTVPSEKAIAQWIKVT 140
           LSDPTVPS +A+AQ IKVT
Sbjct: 125 LSDPTVPSGRAVAQQIKVT 105

BLAST of Carg24679 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_7G004070 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 171 LEYRRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKRKKHSDCKG--IHVSPHHCR 230
           L  +RGLSRYYSGKARSFACIAD R VEDLKKP HPDAKKRKKHSD K   I+V P HCR
Sbjct: 20  LPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCR 79

Query: 231 RASSTHCSIPFFAS 243
           R SS HCS+PF A+
Sbjct: 80  RVSS-HCSVPFIAT 92

BLAST of Carg24679 vs. NCBI nr
Match: PPR81947.1 (hypothetical protein GOBAR_AA38767 [Gossypium barbadense])

HSP 1 Score: 107.5 bits (267), Expect = 6.7e-20
Identity = 62/97 (63.92%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 43  GSESSVRYHSERARILTLYQDLRTKGQSQVDSFYGGVGLKVIEACKGLLGPDGDCPSSAK 102
           G E SVRYHS RARILTL QDL TKGQSQVDSFYG               P  D PSSAK
Sbjct: 160 GLEPSVRYHSGRARILTLCQDLSTKGQSQVDSFYGA------------RPPKRDWPSSAK 219

Query: 103 VEGSLTERPTRRVETKVGLSDPTVPSEKAIAQWIKVT 140
            EGSL  RPTR+  TKV LSDPT+PS KA AQ I+VT
Sbjct: 220 AEGSLPARPTRQAGTKVSLSDPTIPSGKAFAQRIEVT 244

BLAST of Carg24679 vs. NCBI nr
Match: KJB72464.1 (hypothetical protein B456_011G180000 [Gossypium raimondii])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 0

Query: 1  MRTTCTWTERLYEASLFIGIGFGPFLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTL 60
          M+TT TWTER YEASLF+GIGF  FL SL G  RRPPS    G E S+RY S+RARI+T+
Sbjct: 5  MQTTRTWTERPYEASLFLGIGFELFLRSLRGRRRRPPS---GGLEPSLRYDSKRARIITI 64

Query: 61 YQDLRTKGQSQVDSFYG 78
          +QDLR  GQSQVDSFYG
Sbjct: 65 FQDLRANGQSQVDSFYG 78

BLAST of Carg24679 vs. TrEMBL
Match: tr|A0A2P5S430|A0A2P5S430_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09165 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 77/115 (66.96%), Postives = 79/115 (68.70%), Query Frame = 0

Query: 25  FLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTLYQDLRTKGQSQVDSFYGGVGLKVI 84
           FL  L G  RRPPS    G E SVRYHS RARILTL QDLR K QSQ          KV 
Sbjct: 165 FLVGLSGRRRRPPS---GGPEPSVRYHSGRARILTLCQDLRAKEQSQASQ-------KVT 224

Query: 85  EACKGLLGPDGDCPSSAKVEGSLTERPTRRVETKVGLSDPTVPSEKAIAQWIKVT 140
           EACKG LGPDGD  SSAK EGSLT RPTRR   KVGLSDPTVPS +A+AQ IKVT
Sbjct: 225 EACKGFLGPDGDWSSSAKAEGSLTARPTRRAGMKVGLSDPTVPSGRAVAQRIKVT 269

BLAST of Carg24679 vs. TrEMBL
Match: tr|A0A2J6K843|A0A2J6K843_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X14541 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 75/139 (53.96%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 1   MRTTCTWTERLYEASLFIGIGFGPFLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTL 60
           MRTTCTWTER YEASLF GIGF  FL +LGG  RRPPS                      
Sbjct: 5   MRTTCTWTERPYEASLFPGIGFVLFLRNLGGRRRRPPS---------------------- 64

Query: 61  YQDLRTKGQSQVDSFYGGVGLKVIEACKGLLGPDGDCPSSAKVEGSLTERPTRRVETKVG 120
                           GG  LKV E CKG LG +GD PSSAK EGSLT R T R  TKVG
Sbjct: 65  ----------------GGASLKVTEVCKGFLGSNGDWPSSAKAEGSLTARHTLRAGTKVG 105

Query: 121 LSDPTVPSEKAIAQWIKVT 140
           LSDPTVPS +A+AQ IKVT
Sbjct: 125 LSDPTVPSGRAVAQQIKVT 105

BLAST of Carg24679 vs. TrEMBL
Match: tr|K4D8C9|K4D8C9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 57/77 (74.03%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MRTTCTWTERLYEASLFIGIGFGPFLHSLGGGGRRPPSRGEWGSESSVRYHSERARILTL 60
          MRTTCTW ER YEASLF  IGFGP L SLGG  RRPPS    G E SVRYH+ R RILTL
Sbjct: 5  MRTTCTWIERPYEASLFPRIGFGPLLRSLGGRQRRPPS---GGPEPSVRYHAGRDRILTL 64

Query: 61 YQDLRTKGQSQVDSFYG 78
           QDLR KGQSQVD FYG
Sbjct: 65 NQDLRAKGQSQVDCFYG 78

BLAST of Carg24679 vs. TrEMBL
Match: tr|A0A0A0K2B1|A0A0A0K2B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 56/74 (75.68%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 171 LEYRRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKRKKHSDCKG--IHVSPHHCR 230
           L  +RGLSRYYSGKARSFACIAD R VEDLKKP HPDAKKRKKHSD K   I+V P HCR
Sbjct: 20  LPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCR 79

Query: 231 RASSTHCSIPFFAS 243
           R SS HCS+PF A+
Sbjct: 80  RVSS-HCSVPFIAT 92

BLAST of Carg24679 vs. TrEMBL
Match: tr|A0A2P5VSX7|A0A2P5VSX7_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38767 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.4e-20
Identity = 62/97 (63.92%), Postives = 65/97 (67.01%), Query Frame = 0

Query: 43  GSESSVRYHSERARILTLYQDLRTKGQSQVDSFYGGVGLKVIEACKGLLGPDGDCPSSAK 102
           G E SVRYHS RARILTL QDL TKGQSQVDSFYG               P  D PSSAK
Sbjct: 160 GLEPSVRYHSGRARILTLCQDLSTKGQSQVDSFYGA------------RPPKRDWPSSAK 219

Query: 103 VEGSLTERPTRRVETKVGLSDPTVPSEKAIAQWIKVT 140
            EGSL  RPTR+  TKV LSDPT+PS KA AQ I+VT
Sbjct: 220 AEGSLPARPTRQAGTKVSLSDPTIPSGKAFAQRIEVT 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PPD93814.13.3e-2766.96hypothetical protein GOBAR_DD09165 [Gossypium barbadense][more]
PLY71224.18.1e-2653.96hypothetical protein LSAT_6X14541 [Lactuca sativa][more]
KGN43154.13.0e-2075.68hypothetical protein Csa_7G004070 [Cucumis sativus][more]
PPR81947.16.7e-2063.92hypothetical protein GOBAR_AA38767 [Gossypium barbadense][more]
KJB72464.11.6e-1868.83hypothetical protein B456_011G180000 [Gossypium raimondii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P5S430|A0A2P5S430_GOSBA2.2e-2766.96Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD09165 PE=4 SV... [more]
tr|A0A2J6K843|A0A2J6K843_LACSA5.4e-2653.96Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X14541 PE=4 SV=1[more]
tr|K4D8C9|K4D8C9_SOLLC1.2e-2074.03Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
tr|A0A0A0K2B1|A0A0A0K2B1_CUCSA2.0e-2075.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1[more]
tr|A0A2P5VSX7|A0A2P5VSX7_GOSBA4.4e-2063.92Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38767 PE=4 SV... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24679-RACarg24679-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172FAMILY NOT NAMEDcoord: 169..234
NoneNo IPR availablePANTHERPTHR33172:SF7SUBFAMILY NOT NAMEDcoord: 169..234