CsGy7G000160 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G000160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	oxidative stress 3
Location	Chr7 : 245870 .. 246428 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTCATCCATATACGTTTTTATGTAAATTCTTCCAATAATTATGTGCCTAATTTTTCACTATTCAAATATTCTTTTTTATTTGAATCTATTTTTAGTTAGCATCTACTTTTGCAGAAGCTTACGTAATAGTAAAATCACATTTTGTGATCAAGTGACAATTTTTTTTTATTATTATTATTCTTTCGAGTTTTAACCAACACTTCAAACATAGACGTTAGATATTACACAATCGTTTATAACAATAATGTTATTTGTTGGTGTTTTGAGTATAGGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

mRNA sequence

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Coding sequence (CDS)

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Protein sequence

MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT

Homology

[Close]

BLAST of CsGy7G000160 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_7G004070 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 3.9e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of CsGy7G000160 vs. NCBI nr
Match: ONH91050.1 (hypothetical protein PRUPE_8G090300 [Prunus persica])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsGy7G000160 vs. NCBI nr
Match: EOX97931.1 (Uncharacterized protein TCM_006830 [Theobroma cacao])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]

BLAST of CsGy7G000160 vs. NCBI nr
Match: PQM35731.1 (uncharacterized protein Pyn_26945 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-24
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G+SM AFDMG+LRT+LPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDSMRAFDMGALRTSLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPAYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsGy7G000160 vs. NCBI nr
Match: XP_008236950.1 (PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume])

HSP 1 Score: 119.0 bits (297), Expect = 8.4e-24
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRT+LPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTSLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsGy7G000160 vs. TAIR10
Match: AT5G56550.1 (oxidative stress 3)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+S+EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]

BLAST of CsGy7G000160 vs. TAIR10
Match: AT5G24890.1 (unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++ SV+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]

BLAST of CsGy7G000160 vs. TAIR10
Match: AT3G03170.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 8.1e-05
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 25  GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 83
           GLS++Y GK++SF  +A+  +VEDL KP++P   K K+  +           HCRR+S
Sbjct: 58  GLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP---------HCRRLS 106

[Close]

BLAST of CsGy7G000160 vs. TAIR10
Match: AT5G21940.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 1.8e-04
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSF--------ACIADVRSVEDLKKPKHPDAKKRK 62
           M SL   LP ++G+S+YYSGK++SF        + +    S++DL KP++P +++R+
Sbjct: 78  MESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRR 134

[Close]

BLAST of CsGy7G000160 vs. TAIR10
Match: AT4G31510.1 (unknown protein)

HSP 1 Score: 40.8 bits (94), Expect = 5.3e-04
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 15  SLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           SL  +LP KRGLS +Y GK++SF  + +  +  DL K + P  K+R+
Sbjct: 75  SLEDSLPIKRGLSNHYIGKSKSFGNLMEASNTNDLVKVESPLNKRRR 121

[Close]

BLAST of CsGy7G000160 vs. TrEMBL
Match: tr|A0A0A0K2B1|A0A0A0K2B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of CsGy7G000160 vs. TrEMBL
Match: tr|M5VHW2|M5VHW2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of CsGy7G000160 vs. TrEMBL
Match: tr|A0A061E0R1|A0A061E0R1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-24
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]

BLAST of CsGy7G000160 vs. TrEMBL
Match: tr|W9S8L8|W9S8L8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027415 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.6e-24
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHP-DAKK 60
          M+ +  ++M+FDMGSLRTNLP KRGLSRYYSGK+RSF C+ADV +VEDLKKP+HP DAKK
Sbjct: 1  MKTESENVMSFDMGSLRTNLPMKRGLSRYYSGKSRSFTCMADVHNVEDLKKPEHPQDAKK 60

Query: 61 RKKHSDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          RKK+S+  + ++NV PP+ CRRVSS   C+ P +
Sbjct: 61 RKKYSERNKELLNVIPPYPCRRVSSTNQCATPCV 94

[Close]

BLAST of CsGy7G000160 vs. TrEMBL
Match: tr|A0A1R3HZ76|A0A1R3HZ76_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25993 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.6e-23
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 8  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIK 67
          M AFDMG+LR+NLPQKRGLSRYYSGK+RSF CIADVR VEDLKK +HP+AKKRKK+S+ K
Sbjct: 7  MGAFDMGALRSNLPQKRGLSRYYSGKSRSFTCIADVRCVEDLKKQEHPEAKKRKKYSN-K 66

Query: 68 EIIINVPPFHCRRVSS--HCSVPFI 91
          E+ +  PP+ CRRVSS  HC+ P I
Sbjct: 67 EMPV-YPPYPCRRVSSYTHCAAPCI 89

The following BLAST results are available for this feature:

BLAST of CsGy7G000160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43154.1	3.9e-45	100.00	hypothetical protein Csa_7G004070 [Cucumis sativus]	[more]
ONH91050.1	2.2e-24	68.13	hypothetical protein PRUPE_8G090300 [Prunus persica]	[more]
EOX97931.1	2.2e-24	70.65	Uncharacterized protein TCM_006830 [Theobroma cacao]	[more]
PQM35731.1	4.9e-24	68.13	uncharacterized protein Pyn_26945 [Prunus yedoensis var. nudiflora]	[more]
XP_008236950.1	8.4e-24	67.03	PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume]	[more]

BLAST of CsGy7G000160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56550.1	4.3e-06	50.00	oxidative stress 3	[more]
AT5G24890.1	5.6e-06	42.86	unknown protein	[more]
AT3G03170.1	8.1e-05	39.66	unknown protein	[more]
AT5G21940.1	1.8e-04	36.84	unknown protein	[more]
AT4G31510.1	5.3e-04	42.55	unknown protein	[more]

BLAST of CsGy7G000160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy7G000160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2B1\|A0A0A0K2B1_CUCSA	2.6e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1	[more]
tr\|M5VHW2\|M5VHW2_PRUPE	1.5e-24	68.13	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1	[more]
tr\|A0A061E0R1\|A0A061E0R1_THECC	1.5e-24	70.65	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1	[more]
tr\|W9S8L8\|W9S8L8_9ROSA	5.6e-24	63.83	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027415 PE=4 SV=1	[more]
tr\|A0A1R3HZ76\|A0A1R3HZ76_9ROSI	3.6e-23	71.76	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_25993 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G000160.1	CsGy7G000160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 3..84
None	No IPR available	PANTHER	PTHR33172:SF7	SUBFAMILY NOT NAMED	coord: 3..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G000160	Cla015905	Watermelon (97103) v1	cgybwmB566
CsGy7G000160	Csa7G004070	Cucumber (Chinese Long) v2	cgybcuB324
CsGy7G000160	ClCG02G004770	Watermelon (Charleston Gray)	cgybwcgB506
CsGy7G000160	CSPI07G00180	Wild cucumber (PI 183967)	cgybcpiB332
CsGy7G000160	CmaCh11G010920	Cucurbita maxima (Rimu)	cgybcmaB900
CsGy7G000160	Lsi11G011230	Bottle gourd (USVL1VR-Ls)	cgyblsiB462
CsGy7G000160	MELO3C029051.2	Melon (DHL92) v3.6.1	cgybmedB466
CsGy7G000160	CsaV3_7G000150	Cucumber (Chinese Long) v3	cgybcucB348
CsGy7G000160	Cla97C02G031750	Watermelon (97103) v2	cgybwmbB502
CsGy7G000160	Carg24679	Silver-seed gourd	carcgybB0188
CsGy7G000160	Carg19397	Silver-seed gourd	carcgybB0326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G000160	Cucumber (Gy14) v2	cgybcgybB071
CsGy7G000160	Cucurbita maxima (Rimu)	cgybcmaB944
CsGy7G000160	Cucurbita maxima (Rimu)	cgybcmaB956
CsGy7G000160	Cucurbita maxima (Rimu)	cgybcmaB961
CsGy7G000160	Cucurbita maxima (Rimu)	cgybcmaB968
CsGy7G000160	Watermelon (Charleston Gray)	cgybwcgB495
CsGy7G000160	Cucurbita moschata (Rifu)	cgybcmoB882
CsGy7G000160	Cucurbita moschata (Rifu)	cgybcmoB927
CsGy7G000160	Cucurbita moschata (Rifu)	cgybcmoB940
CsGy7G000160	Cucurbita moschata (Rifu)	cgybcmoB944
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB897
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB910
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB920
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB970
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB974
CsGy7G000160	Cucurbita pepo (Zucchini)	cgybcpeB987
CsGy7G000160	Cucumber (Chinese Long) v2	cgybcuB295
CsGy7G000160	Bottle gourd (USVL1VR-Ls)	cgyblsiB456
CsGy7G000160	Melon (DHL92) v3.5.1	cgybmeB451
CsGy7G000160	Melon (DHL92) v3.5.1	cgybmeB469
CsGy7G000160	Melon (DHL92) v3.6.1	cgybmedB449
CsGy7G000160	Watermelon (97103) v1	cgybwmB571
CsGy7G000160	Wild cucumber (PI 183967)	cgybcpiB303
CsGy7G000160	Silver-seed gourd	carcgybB0970
CsGy7G000160	Cucumber (Chinese Long) v3	cgybcucB318
CsGy7G000160	Watermelon (97103) v2	cgybwmbB492
CsGy7G000160	Wax gourd	cgybwgoB639
CsGy7G000160	Wax gourd	cgybwgoB653