Carg19397 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19397
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Oxidative stress 3
Location	Cucurbita_argyrosperma_scaffold_096 : 377897 .. 378160 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACTACAGTGGATTTATCAGTTAATTGTTATGATGATGTTGTGTTCGAGTATAGGAGAGGTCTATCTCGATACTACTCGGGAAAATCTAGGTCATTTGCTTGCATAGCTGACGTTCGATGCGTAGAAGACTTGAAGAAACCGAAGCATCCAGAAGCTAAGAAAAGGAAGAAACAATCGGACTGCAAAGAAATTCACGTCCCTCCTTATCACTGTCGAAGAATTTCTTCTCAGTGTTCCATTCCGTTCTTTACTGCATGA

mRNA sequence

ATGGGCACTACAGTGGATTTATCAGTTAATTGTTATGATGATGTTGTGTTCGAGTATAGGAGAGGTCTATCTCGATACTACTCGGGAAAATCTAGGTCATTTGCTTGCATAGCTGACGTTCGATGCGTAGAAGACTTGAAGAAACCGAAGCATCCAGAAGCTAAGAAAAGGAAGAAACAATCGGACTGCAAAGAAATTCACGTCCCTCCTTATCACTGTCGAAGAATTTCTTCTCAGTGTTCCATTCCGTTCTTTACTGCATGA

Coding sequence (CDS)

ATGGGCACTACAGTGGATTTATCAGTTAATTGTTATGATGATGTTGTGTTCGAGTATAGGAGAGGTCTATCTCGATACTACTCGGGAAAATCTAGGTCATTTGCTTGCATAGCTGACGTTCGATGCGTAGAAGACTTGAAGAAACCGAAGCATCCAGAAGCTAAGAAAAGGAAGAAACAATCGGACTGCAAAGAAATTCACGTCCCTCCTTATCACTGTCGAAGAATTTCTTCTCAGTGTTCCATTCCGTTCTTTACTGCATGA

Protein sequence

MGTTVDLSVNCYDDVVFEYRRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISSQCSIPFFTA

Homology

[Close]

BLAST of Carg19397 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_7G004070 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKE--IHVPPYHCRRIS 79
          +RGLSRYYSGK+RSFACIADVR VEDLKKPKHP+AKKRKK SD KE  I+VPP+HCRR+S
Sbjct: 23 KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 82

Query: 80 SQCSIPF 85
          S CS+PF
Sbjct: 83 SHCSVPF 89

[Close]

BLAST of Carg19397 vs. NCBI nr
Match: XP_025011985.1 (uncharacterized protein LOC8284330 [Ricinus communis])

HSP 1 Score: 102.4 bits (254), Expect = 7.7e-19
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS- 79
          +RGLSRYYSGKSRSF C+ADV C+EDLKK +HP+AKKRKK S+ +++HVPPY CRR+SS 
Sbjct: 22 KRGLSRYYSGKSRSFTCMADVHCLEDLKKKEHPDAKKRKKYSERRDLHVPPYPCRRVSST 81

Query: 80 -QCSIPF 85
           QC+ P+
Sbjct: 82 TQCATPY 88

[Close]

BLAST of Carg19397 vs. NCBI nr
Match: PNT20948.1 (hypothetical protein POPTR_009G120300v3 [Populus trichocarpa])

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS- 79
          R GLSRYYSGK+RSF CIADVRC+EDLKKP+ P+ KKR+K SD   +HVPPY CRR+SS 
Sbjct: 23 RGGLSRYYSGKARSFTCIADVRCLEDLKKPERPDPKKRQKYSDRNGLHVPPYPCRRVSSS 82

Query: 80 -QCSIP 84
           QC  P
Sbjct: 83 TQCFSP 88

[Close]

BLAST of Carg19397 vs. NCBI nr
Match: OAY37302.1 (hypothetical protein MANES_11G091000 [Manihot esculenta])

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS 79
          +RGLSRYYSGKSRSFAC+ DV+C+EDLKK +HP+AKKRKK S+ +E H+PPY CR++SS
Sbjct: 22 KRGLSRYYSGKSRSFACMEDVQCLEDLKKKEHPDAKKRKKFSERRESHIPPYQCRKLSS 80

[Close]

BLAST of Carg19397 vs. NCBI nr
Match: EEF49456.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRIS 78
          +RGLSRYYSGKSRSF C+ADV C+EDLKK +HP+AKKRKK S+ +++HVPPY CRRI+
Sbjct: 22 KRGLSRYYSGKSRSFTCMADVHCLEDLKKKEHPDAKKRKKYSERRDLHVPPYPCRRIA 79

[Close]

BLAST of Carg19397 vs. TrEMBL
Match: tr|A0A0A0K2B1|A0A0A0K2B1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKE--IHVPPYHCRRIS 79
          +RGLSRYYSGK+RSFACIADVR VEDLKKPKHP+AKKRKK SD KE  I+VPP+HCRR+S
Sbjct: 23 KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 82

Query: 80 SQCSIPF 85
          S CS+PF
Sbjct: 83 SHCSVPF 89

[Close]

BLAST of Carg19397 vs. TrEMBL
Match: tr|B9RH94|B9RH94_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1448810 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRIS 78
          +RGLSRYYSGKSRSF C+ADV C+EDLKK +HP+AKKRKK S+ +++HVPPY CRRI+
Sbjct: 22 KRGLSRYYSGKSRSFTCMADVHCLEDLKKKEHPDAKKRKKYSERRDLHVPPYPCRRIA 79

[Close]

BLAST of Carg19397 vs. TrEMBL
Match: tr|B9HRJ5|B9HRJ5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G120300v3 PE=4 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS- 79
          R GLSRYYSGK+RSF CIADVRC+EDLKKP+ P+ KKR+K SD   +HVPPY CRR+SS 
Sbjct: 23 RGGLSRYYSGKARSFTCIADVRCLEDLKKPERPDPKKRQKYSDRNGLHVPPYPCRRVSSS 82

Query: 80 -QCSIP 84
           QC  P
Sbjct: 83 TQCFSP 88

[Close]

BLAST of Carg19397 vs. TrEMBL
Match: tr|A0A2C9V1A5|A0A2C9V1A5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G091000 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 42/59 (71.19%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS 79
          +RGLSRYYSGKSRSFAC+ DV+C+EDLKK +HP+AKKRKK S+ +E H+PPY CR++SS
Sbjct: 22 KRGLSRYYSGKSRSFACMEDVQCLEDLKKKEHPDAKKRKKFSERRESHIPPYQCRKLSS 80

[Close]

BLAST of Carg19397 vs. TrEMBL
Match: tr|A0A2I4E7G3|A0A2I4E7G3_9ROSI (uncharacterized protein LOC108986971 isoform X1 OS=Juglans regia OX=51240 GN=LOC108986971 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-17
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 20  RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISS- 79
           RRGLSRYYSGKSR+F C+ADVRC+EDLKKP+HPEAKKRKK S+ K+I+  P  CRR+SS 
Sbjct: 50  RRGLSRYYSGKSRTFTCMADVRCLEDLKKPEHPEAKKRKKYSERKDINHSP--CRRVSSS 109

Query: 80  -QCSIPF 85
            QC+ P+
Sbjct: 110 TQCATPY 114

The following BLAST results are available for this feature:

BLAST of Carg19397 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43154.1	1.1e-22	80.60	hypothetical protein Csa_7G004070 [Cucumis sativus]	[more]
XP_025011985.1	7.7e-19	68.66	uncharacterized protein LOC8284330 [Ricinus communis]	[more]
PNT20948.1	7.2e-17	69.70	hypothetical protein POPTR_009G120300v3 [Populus trichocarpa]	[more]
OAY37302.1	7.2e-17	71.19	hypothetical protein MANES_11G091000 [Manihot esculenta]	[more]
EEF49456.1	7.2e-17	72.41	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of Carg19397 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19397 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19397 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2B1\|A0A0A0K2B1_CUCSA	7.6e-23	80.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1	[more]
tr\|B9RH94\|B9RH94_RICCO	4.8e-17	72.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1448810 PE=4 SV=1	[more]
tr\|B9HRJ5\|B9HRJ5_POPTR	4.8e-17	69.70	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G120300v3 PE=...	[more]
tr\|A0A2C9V1A5\|A0A2C9V1A5_MANES	4.8e-17	71.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G091000 PE=4 SV=...	[more]
tr\|A0A2I4E7G3\|A0A2I4E7G3_9ROSI	8.1e-17	70.15	uncharacterized protein LOC108986971 isoform X1 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19397-RA	Carg19397-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172:SF7	SUBFAMILY NOT NAMED	coord: 18..79
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 18..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19397	Cla015905	Watermelon (97103) v1	carwmB0305
Carg19397	Csa7G004070	Cucumber (Chinese Long) v2	carcuB0342
Carg19397	ClCG02G004770	Watermelon (Charleston Gray)	carwcgB0308
Carg19397	CSPI07G00180	Wild cucumber (PI 183967)	carcpiB0348
Carg19397	Cucsa.377760	Cucumber (Gy14) v1	carcgyB0372
Carg19397	CmaCh11G010920	Cucurbita maxima (Rimu)	carcmaB0438
Carg19397	Lsi11G011230	Bottle gourd (USVL1VR-Ls)	carlsiB290
Carg19397	CsGy7G000160	Cucumber (Gy14) v2	carcgybB0326
Carg19397	MELO3C029051.2	Melon (DHL92) v3.6.1	carmedB0330
Carg19397	CsaV3_7G000150	Cucumber (Chinese Long) v3	carcucB0347
Carg19397	Cla97C02G031750	Watermelon (97103) v2	carwmbB0324

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19397	Carg24679	Silver-seed gourd	carcarB212

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19397	Melon (DHL92) v3.6.1	carmedB0329
Carg19397	Watermelon (Charleston Gray)	carwcgB0307
Carg19397	Watermelon (97103) v1	carwmB0307
Carg19397	Watermelon (97103) v2	carwmbB0323
Carg19397	Wax gourd	carwgoB0398
Carg19397	Wax gourd	carwgoB0401
Carg19397	Cucumber (Gy14) v2	carcgybB0325
Carg19397	Cucumber (Gy14) v1	carcgyB0368
Carg19397	Cucurbita maxima (Rimu)	carcmaB0440
Carg19397	Cucurbita maxima (Rimu)	carcmaB0441
Carg19397	Cucurbita maxima (Rimu)	carcmaB0442
Carg19397	Cucurbita moschata (Rifu)	carcmoB0431
Carg19397	Cucurbita moschata (Rifu)	carcmoB0433
Carg19397	Cucurbita moschata (Rifu)	carcmoB0434
Carg19397	Cucurbita moschata (Rifu)	carcmoB0436
Carg19397	Cucurbita pepo (Zucchini)	carcpeB0436
Carg19397	Cucurbita pepo (Zucchini)	carcpeB0437
Carg19397	Cucurbita pepo (Zucchini)	carcpeB0438
Carg19397	Cucurbita pepo (Zucchini)	carcpeB0440
Carg19397	Wild cucumber (PI 183967)	carcpiB0347
Carg19397	Cucumber (Chinese Long) v2	carcuB0341
Carg19397	Cucumber (Chinese Long) v3	carcucB0346
Carg19397	Bottle gourd (USVL1VR-Ls)	carlsiB288
Carg19397	Melon (DHL92) v3.5.1	carmeB0320
Carg19397	Melon (DHL92) v3.5.1	carmeB0321