Cucsa.377760.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.377760.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaA01g05330D protein
Location	scaffold03806 : 245805 .. 246363 (+)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTCATCCATATACGTTTTTATGTAAATTCTTCCAATAATTATGTGCCTAATTTTTCACTATTCAAATATTCTTTTTtATTTGAATCTATTTTTAGTTAGCATCTACTTTTGCAGAAGCTTACGTAATAGTAAAATCACATTTTGTGATCAAGTGACAATTTTTTTTtATTATTATTATTCTTTCGAGTTTTAACCAACACTTCAAACATAGACGTTAGATATTACACAATCGTTTATAACAATAATGTTATTTGTTGGTGTTTTGAGTATAGGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCccTTCATTGCCACATGA

mRNA sequence

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCCCTTCATTGCCACATGA

Coding sequence (CDS)

ATGGAAGATAAAGGAAACAGCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGAGGTTTATCGAGATACTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCCGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATATCAAAGAAATAATAATCAATGTTCCTCCCTTTCATTGTCGACGAGTTTCTTCTCACTGTTCCGTTCccTTCATTGCCACATGA

Protein sequence

MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT*

Homology

[Close]

BLAST of Cucsa.377760.1 vs. TrEMBL
Match: A0A0A0K2B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of Cucsa.377760.1 vs. TrEMBL
Match: A0A061E0R1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]

BLAST of Cucsa.377760.1 vs. TrEMBL
Match: M5VHW2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011560mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-25
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of Cucsa.377760.1 vs. TrEMBL
Match: W9S8L8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027415 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.0e-25
Identity = 60/94 (63.83%), Postives = 77/94 (81.91%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHP-DAKK 60
          M+ +  ++M+FDMGSLRTNLP KRGLSRYYSGK+RSF C+ADV +VEDLKKP+HP DAKK
Sbjct: 1  MKTESENVMSFDMGSLRTNLPMKRGLSRYYSGKSRSFTCMADVHNVEDLKKPEHPQDAKK 60

Query: 61 RKKHSDIKEIIINV-PPFHCRRVSS--HCSVPFI 91
          RKK+S+  + ++NV PP+ CRRVSS   C+ P +
Sbjct: 61 RKKYSERNKELLNVIPPYPCRRVSSTNQCATPCV 94

[Close]

BLAST of Cucsa.377760.1 vs. TrEMBL
Match: A0A151TCX4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_019525 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-22
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 1


Query: 9  MAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKE 68
          + F+MGSL T+ PQKRGLSRYYSGK+RSFAC+ DV S+EDLKKP+HPDAKKRKKH  +KE
Sbjct: 8  LIFNMGSLGTSFPQKRGLSRYYSGKSRSFACMEDVHSLEDLKKPEHPDAKKRKKHLHMKE 67

Query: 69 IIINVPPFHCRRVS-SHCSVPFI 91
           + N+PP+ CRRVS +  + P++
Sbjct: 68 -LRNLPPYPCRRVSCTQLTTPYV 89

[Close]

BLAST of Cucsa.377760.1 vs. TAIR10
Match: AT5G24890.1 (AT5G24890.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 21/49 (42.86%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++ SV+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]

BLAST of Cucsa.377760.1 vs. TAIR10
Match: AT3G03170.1 (AT3G03170.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.3e-06
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 23  KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDIKEIIINVPPFHCRRVS 82
           +RGLS++Y GK++SF  +A+  +VEDL KP++P   K K+  +           HCRR+S
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP---------HCRRLS 106

[Close]

BLAST of Cucsa.377760.1 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 47.8 bits (112), Expect = 4.4e-06
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 1


Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+S+EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]

BLAST of Cucsa.377760.1 vs. NCBI nr
Match: gi|700187921|gb|KGN43154.1| (hypothetical protein Csa_7G004070 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

[Close]

BLAST of Cucsa.377760.1 vs. NCBI nr
Match: gi|659094470|ref|XP_008448077.1| (PREDICTED: uncharacterized protein LOC103490363 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-42
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGN+MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNNMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 93
          KKHSD KE I NVPPFHCRR SSHCSVPFIAT
Sbjct: 61 KKHSDCKE-ITNVPPFHCRRASSHCSVPFIAT 91

[Close]

BLAST of Cucsa.377760.1 vs. NCBI nr
Match: gi|595791483|ref|XP_007199490.1| (hypothetical protein PRUPE_ppb011560mg [Prunus persica])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

[Close]

BLAST of Cucsa.377760.1 vs. NCBI nr
Match: gi|590685432|ref|XP_007042100.1| (Uncharacterized protein TCM_006830 [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDIKEIIINVPPFHCRRVSS--HCSVPFI 91
          KK+S+ KE+ +   P+ CRRVSS  HC+ P I
Sbjct: 61 KKYSNKKEMQL-YTPYPCRRVSSCTHCAAPCI 90

[Close]

BLAST of Cucsa.377760.1 vs. NCBI nr
Match: gi|645262847|ref|XP_008236950.1| (PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 4  KGNSMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G++M AFDMG+LRT+LPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTSLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDIKEI-IINVPPFHCRRVSS--HCSVPFI 91
          HS+ K   +   PP+ CRRVSS   C+ P +
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAPCV 92

The following BLAST results are available for this feature:

BLAST of Cucsa.377760.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2B1_CUCSA	3.7e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004070 PE=4 SV=1	[more]
A0A061E0R1_THECC	2.1e-25	70.65	Uncharacterized protein OS=Theobroma cacao GN=TCM_006830 PE=4 SV=1	[more]
M5VHW2_PRUPE	2.1e-25	68.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb011560mg PE=4 SV=1	[more]
W9S8L8_9ROSA	8.0e-25	63.83	Uncharacterized protein OS=Morus notabilis GN=L484_027415 PE=4 SV=1	[more]
A0A151TCX4_CAJCA	1.7e-22	65.06	Uncharacterized protein OS=Cajanus cajan GN=KK1_019525 PE=4 SV=1	[more]

BLAST of Cucsa.377760.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24890.1	2.0e-06	42.86	unknown protein	[more]
AT3G03170.1	3.3e-06	40.00	unknown protein	[more]
AT5G56550.1	4.4e-06	50.00	oxidative stress 3	[more]

BLAST of Cucsa.377760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700187921\|gb\|KGN43154.1\|	5.3e-46	100.00	hypothetical protein Csa_7G004070 [Cucumis sativus]	[more]
gi\|659094470\|ref\|XP_008448077.1\|	3.6e-42	94.57	PREDICTED: uncharacterized protein LOC103490363 [Cucumis melo]	[more]
gi\|595791483\|ref\|XP_007199490.1\|	3.0e-25	68.13	hypothetical protein PRUPE_ppb011560mg [Prunus persica]	[more]
gi\|590685432\|ref\|XP_007042100.1\|	3.0e-25	70.65	Uncharacterized protein TCM_006830 [Theobroma cacao]	[more]
gi\|645262847\|ref\|XP_008236950.1\|	1.1e-24	67.03	PREDICTED: uncharacterized protein LOC103335701 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.377760	Cucsa.377760	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.377760.1	Cucsa.377760.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.377760.1.CDS.1	Cucsa.377760.1.CDS.1	CDS
Cucsa.377760.1.CDS.2	Cucsa.377760.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 11..83 score: 1.5
None	No IPR available	PANTHER	PTHR33172:SF7	SUBFAMILY NOT NAMED	coord: 11..83 score: 1.5