Cucsa.365970 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold03611 : 3867616 .. 3867859 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTCAAATCCAAAAGAGGTAGGAAAGGAGATGTTTATGAGCATGGTACCAATTGGGAGGATGTGCCAAGCTCGAGCAAGGTGTGGCCAAGCGATGAGGACAAAGGCTACCGTTGGGTTGCGGAGCCGGGGATCGATAGAAAGGCCAAAGATTACATCGATAGGATTTATAAAAATCGTGTCTTCGAAACCGAGCGTCAAACTGTCACTATTCATCCCAATGGACCTAATTCCAATGTGTAG

mRNA sequence

CTTTTTCAAATCCAAAAGAGGTAGGAAAGGAGATGTTTATGAGCATGGTACCAATTGGGAGGATGTGCCAAGCTCGAGCAAGGTGTGGCCAAGCGATGAGGACAAAGGCTACCGTTGGGTTGCGGAGCCGGGGATCGATAGAAAGGCCAAAGATTACATCGATAGGATTTATAAAAATCGTGTCTTCGAAACCGAGCGTCAAACTGTCACTATTCATCCCAATGGACCTAATTCCAATGTGTAG

Coding sequence (CDS)

CTTTTTCAAATCCAAAAGAGGTAGGAAAGGAGATGTTTATGAGCATGGTACCAATTGGGAGGATGTGCCAAGCTCGAGCAAGGTGTGGCCAAGCGATGAGGACAAAGGCTACCGTTGGGTTGCGGAGCCGGGGATCGATAGAAAGGCCAAAGATTACATCGATAGGATTTATAAAAATCGTGTCTTCGAAACCGAGCGTCAAACTGTCACTATTCATCCCAATGGACCTAATTCCAATGTGTAG

Protein sequence

FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV*

Homology

[Close]

BLAST of Cucsa.365970 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.4e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR 60
          FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR
Sbjct: 19 FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR 78

Query: 61 VFETERQTVTIHPNGPNSNV 81
          VFETERQTVTIHPNGPNSNV
Sbjct: 79 VFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cucsa.365970 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-29
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKSKRGRKGD Y+HG  W D +P S+KVWPSDEDK + W+AEPGIDRKAKDYIDRIY+N
Sbjct: 18 FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 78 RVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cucsa.365970 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-29
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKS+RGRKGD Y+HG  W +++P S+KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 18 FFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 78 RVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cucsa.365970 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEH-GTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKS+RGRKGD   H G+  +++P S KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 19 FFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 78

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 79 RVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Cucsa.365970 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-23
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          F KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 18 FLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPN 75
          RVFE+ERQTVTI  N
Sbjct: 78 RVFESERQTVTIPTN 92

[Close]

BLAST of Cucsa.365970 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 14 EHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNRVFETERQTV 70
          E   +W+DV  + K W SDEDK Y WVAEPGIDRKA  +I + + +RV E+ERQT+
Sbjct: 12 EADASWDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of Cucsa.365970 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR 60
          FFK++R  +    E   +W+D   + K   SDEDK Y WVAEPGIDRKA  +I + +  R
Sbjct: 18 FFKTRRSHR---VEADGSWDDFGYTRKAMASDEDKRY-WVAEPGIDRKASAFIAKFHATR 77

Query: 61 VFETERQTVT 71
          V E+ERQT++
Sbjct: 78 VSESERQTLS 83

[Close]

BLAST of Cucsa.365970 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR 60
          FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR
Sbjct: 19 FFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKNR 78

Query: 61 VFETERQTVTIHPNGPNSNV 81
          VFETERQTVTIHPNGPNSNV
Sbjct: 79 VFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cucsa.365970 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKSKRGRKGD Y+HG  W D +P S+KVWPSDEDK + W+AEPGIDRKAKDYIDRIY+N
Sbjct: 18 FFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 78 RVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cucsa.365970 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-29
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKS+RGRKGD Y+HG  W +++P S+KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 18 FFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 78 RVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cucsa.365970 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEH-GTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          FFKS+RGRKGD   H G+  +++P S KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 19 FFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 78

Query: 61 RVFETERQTVTIHPNGPNSNV 81
          RVFE+ERQTVTI PNG  SNV
Sbjct: 79 RVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Cucsa.365970 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-23
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1  FFKSKRGRKGDVYEHGTNWEDVPS-SSKVWPSDEDKGYRWVAEPGIDRKAKDYIDRIYKN 60
          F KSK  RKGD Y+HG +W D  S S KVWPSDEDK + WVAEPGIDRKAKDYIDRIY+N
Sbjct: 18 FLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRN 77

Query: 61 RVFETERQTVTIHPN 75
          RVFE+ERQTVTI  N
Sbjct: 78 RVFESERQTVTIPTN 92

The following BLAST results are available for this feature:

BLAST of Cucsa.365970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W0_CUCSA	2.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	1.2e-29	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	2.7e-29	76.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	2.2e-26	74.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	1.7e-23	74.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Cucsa.365970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	2.3e-11	55.36	unknown protein	[more]
AT3G05858.1	1.1e-10	47.14	unknown protein	[more]

BLAST of Cucsa.365970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190669\|gb\|KGN45873.1\|	3.4e-41	100.00	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	1.8e-29	77.78	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	3.9e-29	76.54	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	3.1e-26	74.07	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	2.5e-23	74.67	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365970.1	Cucsa.365970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..69 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.365970	Cla000934	Watermelon (97103) v1	cgywmB656
Cucsa.365970	Csa6G014870	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365970	MELO3C025021	Melon (DHL92) v3.5.1	cgymeB592
Cucsa.365970	ClCG08G002280	Watermelon (Charleston Gray)	cgywcgB627
Cucsa.365970	CSPI06G02460	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365970	CmaCh09G012710	Cucurbita maxima (Rimu)	cgycmaB0989
Cucsa.365970	CmoCh09G012270	Cucurbita moschata (Rifu)	cgycmoB0991
Cucsa.365970	Lsi08G002150	Bottle gourd (USVL1VR-Ls)	cgylsiB591
Cucsa.365970	MELO3C025017.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365970	CsaV3_6G002620	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365970	Cla97C08G146310	Watermelon (97103) v2	cgywmbB633
Cucsa.365970	Bhi04G001775	Wax gourd	cgywgoB733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None