Cla000934 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000934
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 12680698 .. 12680997 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTGGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

mRNA sequence

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTGGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAACCGTGTTTTGGAATCTGAGCGCCAAACTGTTACCGTACCCTCCAATGGAACAAAACCCAATATGTAA

Protein sequence

MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM

Homology

[Close]

BLAST of Cla000934 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.9e-42
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRV ESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Cla000934 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-41
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRV ESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla000934 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.5e-41
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRV ESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla000934 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIY+NRV E+ERQTVT+  NG   N+
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cla000934 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-33
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FS  KS+  RKGDH DH  SW +E  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVLESERQTVTVPSN 94
          GIDRKAKDYIDRIYRNRV ESERQTVT+P+N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of Cla000934 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 8.4e-42
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRV ESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Cla000934 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRV ESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla000934 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRV ESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Cla000934 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-33
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVLESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIY+NRV E+ERQTVT+  NG   N+
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Cla000934 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-33
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FS  KS+  RKGDH DH  SW +E  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVLESERQTVTVPSN 94
          GIDRKAKDYIDRIYRNRV ESERQTVT+P+N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

The following BLAST results are available for this feature:

BLAST of Cla000934 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6_CUCSA	5.9e-42	83.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	1.7e-41	81.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	8.5e-41	82.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	1.7e-33	70.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	2.2e-33	74.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of Cla000934 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190665\|gb\|KGN45869.1\|	8.4e-42	83.84	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	2.5e-41	81.44	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.2e-40	82.47	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	2.5e-33	70.71	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	3.2e-33	74.73	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000934	Cla000934.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..88 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla000934	Cucsa.365970	Cucumber (Gy14) v1	cgywmB656
Cla000934	Bhi04G001775	Wax gourd	wgowmB306

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000934	Melon (DHL92) v3.5.1	mewmB305