ClCG08G002280 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002280
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribosomal protein S12
Location	CG_Chr08 : 4836101 .. 4836400 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTTCCAATGGAACAAAACCCAATATGTAA

mRNA sequence

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTTCCAATGGAACAAAACCCAATATGTAA

Coding sequence (CDS)

ATGGGAGGCAACAACAGGCAAAAGAAAGCCCACTCATCTTTTTCAATATTTAGCCTTTTCAAATCTAGAAGGGGTCGAAAAGGAGACCACTGCGACCACAGCTGCTCTTGGCCAAATGAGATGCCGAGATCGAGCAAGGTGTGGCCAAGCGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTTGAATCTGAGCGCCAAACTGTTACCGTACCTTCCAATGGAACAAAACCCAATATGTAA

Protein sequence

MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM

Homology

[Close]

BLAST of ClCG08G002280 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of ClCG08G002280 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-42
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002280 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-41
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002280 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.5e-34
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+  NG   N+
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of ClCG08G002280 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-34
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FS  KS+  RKGDH DH  SW +E  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPSN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P+N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

[Close]

BLAST of ClCG08G002280 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-13
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 1  MGGNNRQKKAHSS--FSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FS FK+RR  +    +   SW ++   + K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of ClCG08G002280 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-09
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 26 RKGDH--CDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFES 85
          R+  H   +   SW +++  + K W SDEDK  +WVAEPGIDRKA  +I + + +RV ES
Sbjct: 4  RRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSES 63

Query: 86 ERQTV 89
          ERQT+
Sbjct: 64 ERQTL 66

[Close]

BLAST of ClCG08G002280 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 84/99 (84.85%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGGNNRQKKAH+SFSIFS FKSRRGRKGDHC+HS S  +EMPRS KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG K N+
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of ClCG08G002280 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.9e-42
Identity = 80/97 (82.47%), Postives = 88/97 (90.72%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKS+RGRKGDH DH  +WP+EMPRS+KVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002280 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 1


Query: 3   GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
           G NRQKK+HSSFSIFS FKSRRGRKGDH DH  +W +EMPRS+KVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           GIDRKAKDYIDRIYRNRVFESERQTVT+  NGTK N+
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of ClCG08G002280 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-34
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1   MGGNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVA 60
           MGG++RQKK HSSFSIFS FKS+RGRKGD  +H  +W  ++P SSKVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTVPSNGTKPNM 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVT+  NG   N+
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of ClCG08G002280 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.5e-34
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 3  GNNRQKKAHSSFSIFSLFKSRRGRKGDHCDHSCSWPNEMPRSSKVWPSDEDKPHHWVAEP 62
          G ++ KK+HSSFS FS  KS+  RKGDH DH  SW +E  RS KVWPSDEDK HHWVAEP
Sbjct: 2  GGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAEP 61

Query: 63 GIDRKAKDYIDRIYRNRVFESERQTVTVPSN 94
          GIDRKAKDYIDRIYRNRVFESERQTVT+P+N
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 92

The following BLAST results are available for this feature:

BLAST of ClCG08G002280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK6_CUCSA	1.2e-42	84.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	3.4e-42	82.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	1.7e-41	83.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	3.5e-34	71.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K8V3_CUCSA	4.5e-34	75.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]

BLAST of ClCG08G002280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	5.1e-13	48.35	unknown protein	[more]
AT5G26620.1	3.4e-09	47.69	unknown protein	[more]

BLAST of ClCG08G002280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190665\|gb\|KGN45869.1\|	1.7e-42	84.85	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	4.9e-42	82.47	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	2.5e-41	83.51	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	5.0e-34	71.72	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]
gi\|700190664\|gb\|KGN45868.1\|	6.5e-34	75.82	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002280.1	ClCG08G002280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..88 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G002280	Csa6G014870	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002280	MELO3C025021	Melon (DHL92) v3.5.1	mewcgB297
ClCG08G002280	Cla97C08G146310	Watermelon (97103) v2	wcgwmbB336
ClCG08G002280	Bhi04G001775	Wax gourd	wcgwgoB633
ClCG08G002280	CSPI06G02460	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002280	Cucsa.325700	Cucumber (Gy14) v1	cgywcgB563
ClCG08G002280	Cucsa.365970	Cucumber (Gy14) v1	cgywcgB627
ClCG08G002280	CmaCh09G012710	Cucurbita maxima (Rimu)	cmawcgB031
ClCG08G002280	CmoCh09G012270	Cucurbita moschata (Rifu)	cmowcgB024
ClCG08G002280	Lsi08G002140	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002280	CsGy6G002500	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002280	MELO3C025017.2	Melon (DHL92) v3.6.1	medwcgB297
ClCG08G002280	CsaV3_6G002620	Cucumber (Chinese Long) v3	cucwcgB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002280	Cucurbita moschata (Rifu)	cmowcgB429
ClCG08G002280	Watermelon (97103) v1	wcgwmB410
ClCG08G002280	Cucurbita pepo (Zucchini)	cpewcgB532