MELO3C025021 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025021
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Tyrosine-protein kinase ABL1
Location	chr3 : 16808870 .. 16809440 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTAAACCACATCAACACTCTCACGCTTCTAAATTATTCATCTATCTATCTAAAATTGCTTCCTTTTAAGCCATGGGAGGCCACAAGCACAAGAAATCTCATTCATCTTTTTCTTTCTTTAGTTTTTTCAAATCCAAATGGAGCAAAAAAGAAGACCATTATGACCACGGTGGCTCATGGCTAGATGATAAGTCGAGATCGGGCAAGGTGTGGCCAAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAAATAATGTGTAAATAATTTTTTTTTTTGCATATAGTATTAGTTCATTAAACTTAGCTTTGTTTAATTAGATGATACCCTAGAAGAAAACTTTATATCAACACTCAACTAATGTGATGTTGAATCCAGTATTGAAAGAGTGATAATAAAATGTCTTCGTGAAAATTATATATGACTTTGTTCTTTACCCTAAAAATAAAAGGCACAACCTTTCCTTC

mRNA sequence

AAACTAAACCACATCAACACTCTCACGCTTCTAAATTATTCATCTATCTATCTAAAATTGCTTCCTTTTAAGCCATGGGAGGCCACAAGCACAAGAAATCTCATTCATCTTTTTCTTTCTTTAGTTTTTTCAAATCCAAATGGAGCAAAAAAGAAGACCATTATGACCACGGTGGCTCATGGCTAGATGATAAGTCGAGATCGGGCAAGGTGTGGCCAAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAAATAATGTGTAAATAATTTTTTTTTTTGCATATAGTATTAGTTCATTAAACTTAGCTTTGTTTAATTAGATGATACCCTAGAAGAAAACTTTATATCAACACTCAACTAATGTGATGTTGAATCCAGTATTGAAAGAGTGATAATAAAATGTCTTCGTGAAAATTATATATGACTTTGTTCTTTACCCTAAAAATAAAAGGCACAACCTTTCCTTC

Coding sequence (CDS)

ATGGGAGGCCACAAGCACAAGAAATCTCATTCATCTTTTTCTTTCTTTAGTTTTTTCAAATCCAAATGGAGCAAAAAAGAAGACCATTATGACCACGGTGGCTCATGGCTAGATGATAAGTCGAGATCGGGCAAGGTGTGGCCAAGCGATGAGGACAAAGCTCATCATTGGGTTGCTGAACCCGGTATTGATCGAAAGGCCAAAGATTACATTGATAGGATCTATCGAAATCGTGTTTTCGAATCCGAGCGTCAAACCGTCACTATACCTACCAATGTGTAA

Protein sequence

MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV*

Homology

[Close]

BLAST of MELO3C025021 vs. TrEMBL
Match: A0A0A0K8V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 8.9e-48
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSF KSKWS+K DHYDHGGSWLD+KSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of MELO3C025021 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.5e-39
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSFFKS+  +K DHYDHGG+WLD+  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MELO3C025021 vs. TrEMBL
Match: A0A0A0K7Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.9e-38
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSFFKSK  +K DHYDHGG+W D+  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MELO3C025021 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.3e-34
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSFFKS+  +K DH +H GS LD+  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of MELO3C025021 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.8e-30
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSFFKSK  +K D Y+HG +W +D   S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of MELO3C025021 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-14
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGG     S   FS FSFFK++ S +    +  GSW DD   + K   SDEDK  +WVAE
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVT 89
          PGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 PGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of MELO3C025021 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.6e-10
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 1


Query: 24 SKKEDHY--DHGGSWLDDKSRSGKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRVFE 83
          +++  H+  +   SW DD   + K W SDEDK  +WVAEPGIDRKA  +I + + +RV E
Sbjct: 3  ARRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSE 62

Query: 84 SERQTV 88
          SERQT+
Sbjct: 63 SERQTL 66

[Close]

BLAST of MELO3C025021 vs. NCBI nr
Match: gi|700190664|gb|KGN45868.1| (hypothetical protein Csa_6G014880 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-47
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGGHKHKKSHSSFSFFSF KSKWS+K DHYDHGGSWLD+KSRSGKVWPSDEDKAHHWVAE
Sbjct: 1  MGGHKHKKSHSSFSFFSFLKSKWSRKGDHYDHGGSWLDEKSRSGKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 94
          PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTNV 93

[Close]

BLAST of MELO3C025021 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSFFKS+  +K DHYDHGG+WLD+  RS KVWPSDEDKAHHWVAE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MELO3C025021 vs. NCBI nr
Match: gi|700190666|gb|KGN45870.1| (hypothetical protein Csa_6G014900 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.1e-38
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 1  MGGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAE 60
          MGG++ KKSHSSFS FSFFKSK  +K DHYDHGG+W D+  RS KVWPSDEDKAHHW+AE
Sbjct: 1  MGGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          PGIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 61 PGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MELO3C025021 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-34
Identity = 70/91 (76.92%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 61
          G ++ KK+H+SFS FSFFKS+  +K DH +H GS LD+  RSGKVWPSDEDKAHHWVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIYRNRVFESERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of MELO3C025021 vs. NCBI nr
Match: gi|700190669|gb|KGN45873.1| (hypothetical protein Csa_6G016905 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-30
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 1


Query: 2  GGHKHKKSHSSFSFFSFFKSKWSKKEDHYDHGGSWLDDKSRSGKVWPSDEDKAHHWVAEP 61
          G H+ KK+HSSFS FSFFKSK  +K D Y+HG +W +D   S KVWPSDEDK + WVAEP
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNW-EDVPSSSKVWPSDEDKGYRWVAEP 62

Query: 62 GIDRKAKDYIDRIYRNRVFESERQTVTIPTN 93
          GIDRKAKDYIDRIY+NRVFE+ERQTVTI  N
Sbjct: 63 GIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

The following BLAST results are available for this feature:

BLAST of MELO3C025021 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V3_CUCSA	8.9e-48	95.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014880 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	7.5e-39	82.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2_CUCSA	2.9e-38	81.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	4.3e-34	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	3.8e-30	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of MELO3C025021 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	3.4e-14	48.86	unknown protein	[more]
AT5G26620.1	6.6e-10	48.48	unknown protein	[more]

BLAST of MELO3C025021 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190664\|gb\|KGN45868.1\|	1.3e-47	95.70	hypothetical protein Csa_6G014880 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	1.1e-38	82.61	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]
gi\|700190666\|gb\|KGN45870.1\|	4.1e-38	81.52	hypothetical protein Csa_6G014900 [Cucumis sativus]	[more]
gi\|700190665\|gb\|KGN45869.1\|	6.1e-34	76.92	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190669\|gb\|KGN45873.1\|	5.4e-30	71.43	hypothetical protein Csa_6G016905 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025021T1	MELO3C025021T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..87 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025021	ClCG08G002280	Watermelon (Charleston Gray)	mewcgB297
MELO3C025021	Cla97C08G146310	Watermelon (97103) v2	mewmbB304
MELO3C025021	Bhi04G001779	Wax gourd	mewgoB347
MELO3C025021	CSPI06G02460	Wild cucumber (PI 183967)	cpimeB468
MELO3C025021	Cucsa.365970	Cucumber (Gy14) v1	cgymeB592
MELO3C025021	Cucsa.325700	Cucumber (Gy14) v1	cgymeB537
MELO3C025021	CmaCh09G012710	Cucurbita maxima (Rimu)	cmameB026
MELO3C025021	CmoCh09G012270	Cucurbita moschata (Rifu)	cmomeB015
MELO3C025021	Lsi08G002140	Bottle gourd (USVL1VR-Ls)	lsimeB471
MELO3C025021	CsGy6G002500	Cucumber (Gy14) v2	cgybmeB409
MELO3C025021	CsaV3_6G002620	Cucumber (Chinese Long) v3	cucmeB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025021	Cucurbita pepo (Zucchini)	cpemeB512
MELO3C025021	Cucurbita maxima (Rimu)	cmameB410
MELO3C025021	Cucurbita moschata (Rifu)	cmomeB401
MELO3C025021	Cucumber (Chinese Long) v2	cumeB415
MELO3C025021	Watermelon (97103) v1	mewmB312