Cucsa.365920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.365920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING finger protein
Location	scaffold03611 : 3797144 .. 3802926 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGTTGATTCTCTTTCTTCAATTCATTTTCTCTTTTGATGCTGCCTTTTTTTTTtCTTTTTAAATTTTTATAATTTAATCTCTCTTTGAATGATTCTGTTCCTCCATTTCATTTTCGTATTTCATTTCTTTGCAACTGTCGACTAGGTTTGTTTCTTGGAATTTGGAATCTGGTTGCTGTTTTTtCCTTTGTCCTGATTAGTCACATTAATCACGGCTTAGTTATCCGATATCGTGAATTGTAGTCTCTTCGAGCTATTTTTTACCGATGGACAAGTCTTGGATGAAATTTCTGTTTCTTGGTAACGTGTTCTCGAACCTCTGCATCTCAACAAATGGTCAAATGAAACTAAAATCTGAAACAGAGGCTGAGATTGAATTGCATCTCTTTGAGATTATTTGCTTCCAGCTGGAAATAACTGCCTAAATGATTGAGGGTGGTCACTGGAGTTAATCCTGTACAATTAAGAGAGAGTTCATCTAGTTTTTGGATCAGAGAAGGAACTTCGTGGTTTCATTTTCAACTTTAGGAACTTGTTGTATAAGAAATGCATTAAATCATGAGATGTGCATGAACATTTTTAATGTTGGAAGACAAAGTTCTGCTTGCTAGTTGTATTAATATCCCTTTTATGAGATTTGTTTGTAAAATATTTAAACAAAAGAAAAaGAAATGTTCATCTATGAAGCTCACTGCATTGTCTGCTTCCCTATATGTAGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGGTATTTCTCTTTTTTACATAATTTCTCTGATGAACTGCTAGTTAAAAGTGATTGTTGAATATTCTTTGGAACATGAAAAAGGATTTTCCATGAAGAATTGACCATAGAGAGTGAGCATTGATTTGCTAGGGCAGGAAGAAGGCAGGAAGCATTATTCCATGTCCAGTGAGAACAATTAGGACCAAGAAACTGAAGTTAATGGCCTAAATATGTCTCCTCGTATGAGAAGATAATGATAGTTTCATCAACAAACTGAACGTAGGAATTAGGAAATGGACATTGGACATAGCATGCCGATCATTCCCCAATTCAAAGCCTTTAGTCTAAGTTCTGTTTTCAGCAAGATTCAACGTTCTACTAAGGCAATTCAACACAAGAATAGTGAATAAAAAGGAAGGGGATAATGGGGCACCATGCCCAAGCTAACACTCTTCTCCACAAAGGCTACTACCTGAATTCCTCCTAACACACCATCATTCCCTGCCACATGTACTCTCAAATCATGTCCCACTTCTCTAACTAACCATCAGGTGTACCAGTTCCCTTTCTGCCCTTCCTACTATAAGTTTTTGTCACTTGGGGCTTCACATTTTTCCTTTGATGATAATGGATAAATTAGCTGAAGAGAGACAGCCTATAATTTACTAGAATATTGTTGACAATGTTCTAATCAGCTTTATTACAATCCTTCTTTTTTTTTGTGCTTCCACTCATCAATTAATTCATATGCAATAAGAGATGCATTGATTTGATGACCGATTGCAAAAATGGATTGATTttCTGTGATGGTGGATGGAAGAACTTGTTTAGTCTCTCTGATAAATCTCTAGGAATGATCTTATAGAGAAAAGTGGTGAGGCGAATGGCCTAAACCTACTGATTTGGCATCAGTCTTTTTGGGGATGAGGCAGAGGCAAGTTTTGTTGAGGCTAGCATTGGTAATATCATTCTCAGAAAAATCATTGAACACCCTCTTGATGCCATCCTTGAAAGTGTTCCAGGAGATTTTTTATTGAACAAATCGTAAAATGAATTTTCTAGTCTGAGAAAGGGAGTTCTAGCATCGTGCTTGTAATGAGGCAGCAATTAATGGAATGTGGCAGAAATCTGTTACCAACTTTTTGAGAACAAAGTTGGTAGTAAAAATCAACAAAAGACTTTTACAAACTCAGCTTCTATGTCACTGACAGCAAGGACACTAACCGTTCTGTGAGGGCATGTTTGGCTCAAGGAGTTTGAAAGTAGGAGTTGAGAAGTAGGGATTTTTGAACACCACTCCTTGTTTGGTCCCAGGAGTTTGTGAGTCTCACCACTAAAAGACATCAATTTTATACATTATCAACTCCTTACATAGTGCGCTCTAGGAGTTCACAACTCCGTAAACTTCATAACTCTTTACTTCTCAATATTCAACTCTTTACCTGAAACACCCCCTAGAGGATTTCAACGGTTGTGTTCTTTCTATATTTTGCAACAATAAGACAATGGAAGAATGAAATTTCATCACCATCAGCTTGCCAATTGGATTTACAGTGCTGTCTCTGCATAATCTCTTCATTTGCAGCAATGGGGAAATTGTCAGATCTAGTAGCTATGCGCCTGTGGATGGAATAATATCTAAAGGCCCATTTTCCTCATTTGGGTCAATGACTTATTATGCACTATCTGAAGCTGACTTTTGTAGTTAGAGTCAGTGGATGAATTCCAGTCCGTGAGAGATAATTTCAGGCATTTCAATCTCTGCATAAAACCACGACCCATCCAACCCACCATGCTGTTTTTGGTTCACCAATGAAACATCAGAACAGAATCATGATATGTTTCAGCCACGTATTAGCAAATTTGAATGAAGTAGGACCCCCTTTCTCTTCTCCAGCCTATGGGTAAATGGGAAAACTTTTTTAGGCAATTTGTTCCAGCCTTTAACCGATAGAAAGTCAAATTTAGATAAGATTCCATCCAAAATGAGAAATTTATCAATAAAGGTGTCGGAACCAAATTCTCTGCTACTGTACCATGTGAGAGGACTGTTTTGCAGTGGCAGTAAAGTGATTAATAGGATACTGATAGAACACCACTTCCTAACAAGAACCGAAATTTGAAATATATTGAGAATTAATGAAGAACTACAATATGATCCAAGTTTATGGTACTTGGGACCCCCTCTCTTGAGAATACTACTCAACCACCTCCCCcTTCTTCACTCACCCACTTCTTATTTGTAACCACTGCTATTAGTAACTGCCTAAATATCTAATTACCCTTATACCCCTAACCCATACTAATCTAGGTATCTAACAAATACATGGCTCTACAAATCCACTCCCCTTTACTATCAACATTAAAGTCTTCACTGAGGATCTAGTTATTGCCACAGGTACGATAAAACATAAAGCTCTTGCCAATAAGAAACATGGTTAGATGATGAAGATGGGCCATAAATACCCGATGACCAAAAGCTAAAATCATCAGCCAGATTGATGCGTAGGGAAAGGGTTTATGCACCTTCAATAGCATCCAAAACACCCAAAGATGGATCATTCCAAAGGATGAGAATACCACCAAAGAGCTTACAACATTTAGTGGAAGACCAACCACATCCTTAGAATTCCAAAGTGACTTAATGAATCTCTTATTGATAGAGGATTATTTAGTTTCCTGTAAAATCAAATCACAAAAACACAAATTCCCTTCTAGCCTGGATCTGATTTTTTAGAACCTTAAGGGGCCGTTTCTTTTGTGGGTAAAGAAGGTGGGAATAGGTATGGGCTTACAAAGGTTGATGGATATATTTTTTTtACCTTGGAAAAGATATTTCCCAGGGTTTATTATTCAACACAAGTGGAGGATTTCCAATGCCCTTGAGAAGGGAAGGTTTGCAATTCCTTCCCTCAAACTCAGGGTGATATCGGGGCAACTTTGCCCTAAGTTTCAAAATCTAAATCATTTTGTTTTTCAACTTGTGGCATCTCGGAGGAACTTTTGTCCAAAGTTTTAAAATCTAAATCCTTCTATTTTCATTATGGGGCATCTCGAGGCAACTTTGCCCTAGGTTTTAGAACATTTTCCTTTTGTTATTTCATTTCGGGACATTTCAGGGAAACTTTGCCCCGAGTTTTAAAATCTAAATCCTTCTGTTTTTCATCTCGAGGCATCTCATAGGAAATTTGGCTCGAGTTTGTCCCTTGACTATTTATTTTTTATTATTTATTTATTCCCATACATTCTTAATACCATTTCCATGCACAACCAAACACAAACATCTTTAATTCCCAGCAATCTAATTCTCAGACTTGTTATTCTCAGGCATCATTAATTCTCTGTAATGTTATTCCCATTTCAATTCCATCAATCCAAACAGCCCCTAATGGGGCTTTTGGTAATCTGTTGCGGTAGTTAGTATGTATGAATGGTTTGTTGAAACGATATTTACATAACAGAATCTTATTAGTTTAGATTATTAATTTATTTATTATCTAAAATCTAACTACAAGATGTTTACATTTTTTTTTTttATATTCGTGAGTGTTCCGACCAGTTTACGTGCACCTCGACTAATCTCACGGGAACAATATGTTTACAAGTTATAGCAAAAAGTTTACATTCCTTATAGTCCATATAGATATTGAGAGAGTCAATAATAGAAACTAATACAAGTCTATCATTGATAGACTAATGTCTATCAGCTATAGAAATTAATAGAGGCTGTATCATTTATACTATATAAGTGATAGAAAGTGATACAAGCCTATCATTACTAGAGGTTGATAGAAGTCTATCAGTGTCTATCAATGCTCTTTTTGCTACTTCTATAAATAGTTTGACATTTTTTCTATTTGTGAAAATTTATCATAAATTTAGTTACAATGGTTTTTATTTAATAAATCAATATTCAGAATTAATTAATGCAGCCTAAGATACTGAACTGCGTTTtTTtCTTCTGTACAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAGTTAAGTCAATGCCTCAACCCAACTTTCTCAACATCAATTACTACTTATTTAAGTTATTTTAAATTAAAGTTAACTCGTAAATATCCTCTGTTTTTATTGTTCTTTTATTTATCTGAATGAAAAAATTGCTTTCCCATAAGAAGTCTGAACAATCAAGAGAGACACATAACTGAATTCTGGTTGATTGAATGTCATTATATCTGCTTTAATTTGTAATTTGTAATTTGTTTACAGATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATATATATTTTTCACCCCAGATTACCTGTTTGTACTTTCTGTTGGTTTATTGGTTCCTTATGAATTTGTTTTTTtCTGTTTTGGCTTGACTGTTTATGTGCAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTtAATTTtACA

mRNA sequence

CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTTAATTTTACA

Coding sequence (CDS)

ATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGA

Protein sequence

MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT*

Homology

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BLAST of Cucsa.365920 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.9e-32
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1


Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVP----SEVS 69
           C +C  +  +P + NC H FCG CI+  W +G+ L    CP+CR+ +TLL P    SE S
Sbjct: 88  CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQS 147

Query: 70  PIQQSDP-EVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVI 129
            +    P E   +L +I  YNR F G    L  RL+D+P LLR   RE+ +    L  + 
Sbjct: 148 AVAADSPVEPTLILTDISDYNRRFSGQPRSLLDRLRDVPTLLRHAFREMFSVG-GLFWMF 207

Query: 130 RTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGG 185
           R R+ + +  ++ Y VSP+D +PE +LGL G +DD  ++L+ F+YI+ MYR V+  R  G
Sbjct: 208 RVRILLCVCGALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266

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BLAST of Cucsa.365920 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.3e-31
Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = 1


Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C +C  +   P + NC H FCG CI+  W +G+ L    CP+CR+++TLL P   +  Q+
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPLFGATDQE 146

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVY 129
              +   +L     YNR F G    L  R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 147 ---DAQNILQEATGYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIV 206

Query: 130 IAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 182
           + ++ +++Y VSP+DIIPEAL G+ G +DD+ +L +  +YI+ MYR V+  R
Sbjct: 207 LCLLGALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254

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BLAST of Cucsa.365920 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 7.4e-31
Identity = 63/172 (36.63%), Postives = 99/172 (57.56%), Query Frame = 1


Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + ++P + NC H FCG CI+  W +GS L    CP+CR+++TLL+P  V     
Sbjct: 88  CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLP--VFGEND 147

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVY 129
              +V  +  +I  YNR F G    + +R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 148 QSQDVVSLHQDISDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFS-VGGLFWMFRIRII 207

Query: 130 IAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 182
           + ++ +  Y +SP+D +PEAL G+ G +DD  ++ +  +YI+ MYR V+  R
Sbjct: 208 LCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 256

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BLAST of Cucsa.365920 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 64/172 (37.21%), Postives = 98/172 (56.98%), Query Frame = 1


Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+++TLL+       Q 
Sbjct: 87  CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 146

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVY 129
            D  V R+  +I  YNR F G    + +R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 147 QD--VLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFS-VGGLFWMFRIRII 206

Query: 130 IAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 182
           + ++ +  Y +SP+D +PEAL G+ G +DD  ++ +  +YI+ MYR V+  R
Sbjct: 207 LCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255

[Close]

BLAST of Cucsa.365920 vs. Swiss-Prot
Match: RN170_MOUSE (E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 63/172 (36.63%), Postives = 98/172 (56.98%), Query Frame = 1


Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+++TLL+       Q 
Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 174

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVY 129
            D  V R+  ++  YNR F G    + +R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 175 QD--VIRLRQDVNDYNRRFSGQPRSIMERIMDLPTLLRHAFREVFS-VGGLFWMFRIRIM 234

Query: 130 IAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 182
           + ++ +  Y +SP+D +PEAL G+ G +DD  ++ +  +YI+ MYR V+  R
Sbjct: 235 LCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 283

[Close]

BLAST of Cucsa.365920 vs. TrEMBL
Match: B9IQE5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-76
Identity = 134/185 (72.43%), Postives = 156/185 (84.32%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPV D CSICHG FNI CQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++SDP+VA VL  I  YN  FGGN++ L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIR RVYIA+VLS IY +SPIDIIPE +LG+ GL+DD+L++LICFL++AA+YR+VL+ 
Sbjct: 121 PLVIRARVYIAVVLSAIYVISPIDIIPEGILGIVGLLDDLLVVLICFLHVAAIYRAVLHY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

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BLAST of Cucsa.365920 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-76
Identity = 132/185 (71.35%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPPV D CSICHG FN+PCQANCSHWFCG CIMLVW HGS LHPCKCPLCRR ITLLV
Sbjct: 1   MEGPPVNDCCSICHGSFNVPCQANCSHWFCGNCIMLVWHHGSSLHPCKCPLCRRHITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++ +  VA +L  +  YNR+FGG S  L QRLQDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERHNSAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREMTDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVI+ RVY+AM LS IY  SPIDIIPEA+LG+ GL+DD+LI+L+CFL++AA+YRSVLY 
Sbjct: 121 PLVIKARVYLAMFLSTIYIFSPIDIIPEAILGIVGLLDDLLIVLVCFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

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BLAST of Cucsa.365920 vs. TrEMBL
Match: A0A067JVY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 5.2e-76
Identity = 131/185 (70.81%), Postives = 153/185 (82.70%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP  D CS+CHGRF +PCQANCSHWFCG CIMLVW HGS + PCKCPLCRR ITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE S  ++ +PEVA +L  + TYNR FGG +T L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           P VIR RVYIAM LS +Y +SP+DIIPE  LG+ GL+DDI+I LICFL++AA+YRSVLY 
Sbjct: 121 PFVIRARVYIAMTLSAVYILSPVDIIPEGFLGIVGLLDDIIIGLICFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of Cucsa.365920 vs. TrEMBL
Match: A0A0D3D024_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 6.4e-74
Identity = 131/185 (70.81%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR I+LLV
Sbjct: 1   MNGPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRPISLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P+E +   +SD  V+ VL N+ TYNR+FGG ST L QR+QDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PTEDTIRNRSDSSVSEVLANLETYNRYFGGRSTSLIQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIR RVYIAM+LSV+Y VSPIDIIPE +LG+ GL+DD+LI LICFL++AA+YRSVLY 
Sbjct: 121 PLVIRARVYIAMILSVVYIVSPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYF 180

Query: 181 RHGGT 186
           RH G+
Sbjct: 181 RHTGS 185

[Close]

BLAST of Cucsa.365920 vs. TrEMBL
Match: A0A0D3D7B9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.4e-74
Identity = 129/185 (69.73%), Postives = 157/185 (84.86%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+ PP  ++CSICHG F+ PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MNQPPENEVCSICHGNFSAPCQANCSHWFCGNCIMLVWRHGSTLRPCKCPLCRRPITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE +   + DP V+ VL++++TYNR FGG ST LSQR+QDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PSEDTSRGRDDPTVSEVLSDVQTYNRVFGGQSTGLSQRIQDLPFLLRRLLREIMDPQRTL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVI+ RVYIA++LSVIY +SPIDIIPEAL G+ GL+DD++I LI  L++AA+YRSVLY+
Sbjct: 121 PLVIKARVYIALILSVIYIISPIDIIPEALFGIIGLLDDVIIALIFLLHVAALYRSVLYS 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of Cucsa.365920 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 277.7 bits (709), Expect = 5.2e-75
Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR I+LLV
Sbjct: 1   MNSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE +   ++D  V  VL N+ TYNR FGG S+ L QR+QDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIR RVYIAM+LS +Y +SPIDIIPE +LG+ GL+DD+LI LICFL++AA+YRSVLY 
Sbjct: 121 PLVIRARVYIAMILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYF 180

Query: 181 RHGGT 186
           RH G+
Sbjct: 181 RHAGS 185

[Close]

BLAST of Cucsa.365920 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-59
Identity = 106/155 (68.39%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 31  GKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGG 90
           G CIMLVW HGS L PCKCPLCRR I+LLVPSE +   ++D  V+ VL+++ TYNR FGG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG 108

Query: 91  NSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAMVLSVIYTVSPIDIIPEAL 150
            S+ L QR+QDLPFLLRRLLRE+ +PQR+LPLVIR RVYIA++LS IY +SPIDIIPE +
Sbjct: 109 QSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGV 168

Query: 151 LGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 186
           LG+ GL+DD+LI LICFL++AA+YRSVLY+RHGG+
Sbjct: 169 LGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 203

[Close]

BLAST of Cucsa.365920 vs. TAIR10
Match: AT4G33940.1 (AT4G33940.1 RING/U-box superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 7.1e-32
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 1


Query: 2   DGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVP 61
           + PP  D+C IC G F +PC+ NC HW+CG CI+  W++ +   PCKCP+C R IT L P
Sbjct: 66  ESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSP 125

Query: 62  SEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLP 121
            E S  ++ + EV  VL+ +R YNR F G  T   Q++ +LPFL++R++  + +   +  
Sbjct: 126 -EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQKVHELPFLVKRMVWHMMDTDVNNL 185

Query: 122 LVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYR 176
                R++ AM +S +YT +  + IP     +  + D   I +I  L +  +YR
Sbjct: 186 YFHEVRIF-AMFMSTLYTAAEFNFIPTGGFRIVTVFDYAAIAMILILRLVGIYR 237

[Close]

BLAST of Cucsa.365920 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 4.5e-105
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV
Sbjct: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN
Sbjct: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180

Query: 181 RHGGT 186
           RHGGT
Sbjct: 181 RHGGT 185

[Close]

BLAST of Cucsa.365920 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 378.3 bits (970), Expect = 8.0e-102
Identity = 180/185 (97.30%), Postives = 182/185 (98.38%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP GDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPL PCKCPLCRRSITLLV
Sbjct: 1   MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLL+EL NPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLQELLNPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIRTRVYIAMVLSV+YTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN
Sbjct: 121 PLVIRTRVYIAMVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180

Query: 181 RHGGT 186
           RHGGT
Sbjct: 181 RHGGT 185

[Close]

BLAST of Cucsa.365920 vs. NCBI nr
Match: gi|224146326|ref|XP_002325966.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 293.5 bits (750), Expect = 2.6e-76
Identity = 134/185 (72.43%), Postives = 156/185 (84.32%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPV D CSICHG FNI CQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++SDP+VA VL  I  YN  FGGN++ L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVIR RVYIA+VLS IY +SPIDIIPE +LG+ GL+DD+L++LICFL++AA+YR+VL+ 
Sbjct: 121 PLVIRARVYIAVVLSAIYVISPIDIIPEGILGIVGLLDDLLVVLICFLHVAAIYRAVLHY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of Cucsa.365920 vs. NCBI nr
Match: gi|802716459|ref|XP_012085009.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas])

HSP 1 Score: 292.0 bits (746), Expect = 7.5e-76
Identity = 131/185 (70.81%), Postives = 153/185 (82.70%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP  D CS+CHGRF +PCQANCSHWFCG CIMLVW HGS + PCKCPLCRR ITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE S  ++ +PEVA +L  + TYNR FGG +T L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           P VIR RVYIAM LS +Y +SP+DIIPE  LG+ GL+DDI+I LICFL++AA+YRSVLY 
Sbjct: 121 PFVIRARVYIAMTLSAVYILSPVDIIPEGFLGIVGLLDDIIIGLICFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of Cucsa.365920 vs. NCBI nr
Match: gi|590603943|ref|XP_007020133.1| (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 [Theobroma cacao])

HSP 1 Score: 292.0 bits (746), Expect = 7.5e-76
Identity = 132/185 (71.35%), Postives = 154/185 (83.24%), Query Frame = 1


Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPPV D CSICHG FN+PCQANCSHWFCG CIMLVW HGS LHPCKCPLCRR ITLLV
Sbjct: 1   MEGPPVNDCCSICHGSFNVPCQANCSHWFCGNCIMLVWHHGSSLHPCKCPLCRRHITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++ +  VA +L  +  YNR+FGG S  L QRLQDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERHNSAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREMTDPQRSL 120

Query: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180
           PLVI+ RVY+AM LS IY  SPIDIIPEA+LG+ GL+DD+LI+L+CFL++AA+YRSVLY 
Sbjct: 121 PLVIKARVYLAMFLSTIYIFSPIDIIPEAILGIVGLLDDLLIVLVCFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

The following BLAST results are available for this feature:

BLAST of Cucsa.365920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN170_DANRE	3.9e-32	38.89	E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1	[more]
RN170_XENLA	4.3e-31	37.79	E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1	[more]
RN170_BOVIN	7.4e-31	36.63	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2	[more]
RN170_HUMAN	1.6e-30	37.21	E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2	[more]
RN170_MOUSE	1.6e-30	36.63	E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1	[more]

BLAST of Cucsa.365920 vs. TrEMBL


Match Name	E-value	Identity	Description
B9IQE5_POPTR	1.8e-76	72.43	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1	[more]
A0A061FKC6_THECC	5.2e-76	71.35	RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is...	[more]
A0A067JVY1_JATCU	5.2e-76	70.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1	[more]
A0A0D3D024_BRAOL	6.4e-74	70.81	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D3D7B9_BRAOL	8.4e-74	69.73	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Cucsa.365920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72175.1	5.2e-75	68.65	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G22510.2	1.8e-59	68.39	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT4G33940.1	7.1e-32	36.21	RING/U-box superfamily protein	[more]

BLAST of Cucsa.365920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441207\|ref\|XP_004138374.1\|	4.5e-105	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]	[more]
gi\|659126217\|ref\|XP_008463070.1\|	8.0e-102	97.30	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
gi\|224146326\|ref\|XP_002325966.1\|	2.6e-76	72.43	zinc finger family protein [Populus trichocarpa]	[more]
gi\|802716459\|ref\|XP_012085009.1\|	7.5e-76	70.81	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]	[more]
gi\|590603943\|ref\|XP_007020133.1\|	7.5e-76	71.35	RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR010652	DUF1232
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR001841	Znf_RING
IPR010652	DUF1232
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.365920.1	Cucsa.365920.1	mRNA
Cucsa.365920.2	Cucsa.365920.2	mRNA
Cucsa.365920.3	Cucsa.365920.3	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 10..52 score: 0.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 10..53 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 8..82 score: 2.4
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 25..34 scor
None	No IPR available	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 1..132 score: 3.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 8..59 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.365920	ClCG08G002490	Watermelon (Charleston Gray)	cgywcgB627
Cucsa.365920	CSPI06G02530	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.365920	CmaCh01G009330	Cucurbita maxima (Rimu)	cgycmaB1003
Cucsa.365920	CmoCh01G009520	Cucurbita moschata (Rifu)	cgycmoB1003
Cucsa.365920	Cp4.1LG02g09420	Cucurbita pepo (Zucchini)	cgycpeB0964
Cucsa.365920	MELO3C025008.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.365920	CsaV3_6G002730	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.365920	Cla97C08G146470	Watermelon (97103) v2	cgywmbB633
Cucsa.365920	Bhi04G001765	Wax gourd	cgywgoB733

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.365920	Cucurbita maxima (Rimu)	cgycmaB0989
Cucsa.365920	Cucurbita moschata (Rifu)	cgycmoB0991
Cucsa.365920	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.365920	Melon (DHL92) v3.5.1	cgymeB592
Cucsa.365920	Watermelon (Charleston Gray)	cgywcgB622
Cucsa.365920	Watermelon (97103) v1	cgywmB656
Cucsa.365920	Cucurbita pepo (Zucchini)	cgycpeB0967
Cucsa.365920	Bottle gourd (USVL1VR-Ls)	cgylsiB591
Cucsa.365920	Silver-seed gourd	carcgyB0757
Cucsa.365920	Watermelon (97103) v2	cgywmbB627