CmoCh01G009520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G009520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING finger protein
Location	Cmo_Chr01 : 5884529 .. 5894965 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACTTGGAAGATTAGATTAGGCAATAATAAAATTTAGAATCTATGGGCAGTTCTTGTACATCAAACACGGATTGAAACTTCATCGGTAAGAAAAGAAATCACGGCTCTGAAATTGGTCTCAAGGAACACGCCTCAGGTTTGAAATTCCAAGTTTGGAATACGTTCATACTCTCGACAAATCAGAATTGGAAGATTTTGATACACAATATGGACGGCCCCCCTGCGGGCGATATCTGTTCGATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAACTGCTCGCACTGGTTCTGCGGTTGGTTCCCTTCTCATATTCTTTTCATAATTCCTCCATTTTTTTTGTTCATCAGTTTCGTATTCGCGTTTCGTTTCTTTTCACTGTCACTAGATTTTGTTGGGATTTCCGAAGTGTCTCTTTTAGCTACCTTGTTTTTGCCCACGTATAAGTAGTCAACAGACGGACAATTTCTCTTCCAGGCCTTGGTAACATGTCTTAGACCTTCAGGACTTCCACGAATGGTTAAATTAAACCAACACCTGAAGTAGAGGTTGTTCTGTTTTCACCAGTAATAGTTGAACAAGAACTACCTAAGAACAAGAACAATGGAGACAATCCCATCAAATTAAGTGAGAGTAAGTCTAGTTTGTCGGATCAGAAAAGGAATTTCATCGTCTCTGGAACTGTTGCTTTACTTGAATGATTACTCGCTTTGGGAAGTTGATATGTAAAAGTGCATTAAATCATGAGATAGGCCTGAAATATTTCAGTGTTGGAAGAAAAAGTGCTGTCTATACCCACCCTTATATTTGTTAATCGTTAGTTATCTTAATGTAACCTTTATGAGGTTTGTTTGTAAAAGATTTAAGATGAAAAACACATGTAAATCTTCAAGTTTTAGTTTCTTTCATTAATCCTTTTAAAACATTGACTTGAGGACTGAATTTGAAGTGGAGGTACTATGATTATATATGTTTTTTCTTCCTAAAGTCTTGAATTTAATTCTTCTTTAGAAAACTATGTTCTTAACTATTTCCCTCTTGTCAAGACGTTGGATTGAGTTTCATTGTTTGAAAAAAGATACCTTTCATTTGCATTTATTGAGGGAAAGAGCCTTCATGTGAGTTTAAACAAAACTCTTCTGGGCTTTATTTTACTGGAATTCATCTTTTGTACGGTCTTAGGCTGTGATGTTCTTTTCTAGACTCACATTATTGAGCTGTGTTTTTTTAAGATAGTTGATATCTTCTTTCTTCCCTGTCTTCTCGGAAGCTCACTGAATTTGGTGCTTCCCTGTATGCAGGAAGGTGCATAATGCTTGTTTGGGATCATGGATCACCACTGCAGCCATGTAAATGCCCCTTATGTCGCCGACAGATCACTTTATTGGTTCCTTCTGAGGCTTCAGCAACGCAGCAAAGTGACCCTGAGGTTGCTCGTGTTCTTAACAATATAAGGAATTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAATCAGGTGGCTTTCTTCTTTACATAATTGCTTTAATGAAAATGCTAGTTGAAGTTATTGTTGAATTTTGGAAATTTTTTCTAGATATTTTTTGGTTGATATCTTATGCAAGATTGACAAGTCATGGATTTCTGTAAATATTGATTGTTTCAGTGACTTATCAACTAAATAAATGGCAGTTTCATCATTTTGTCTGAAGATAATTTTGCTTCTTCAAAATTCTGTTTGCATAAAACTTGAAAGAGGCTTGGTTGATGAGGATTTGAGAGTAAAAAAAGTCGTAACTAGAGCTTTCTCTCTCCCCACCCCCTCTCTCAGCCTTCAATGTGTTCTTTTCTCTCTTTAAATATATCTTTAATTTTTGTTTCTTTCTTCGTTTTTTTAAGGGATTTTATTTACAATTATGGCCTCCCTTAACTCCTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAGAGAATAAGAAAAAGAAATGAATCACTCTAAAGAAAAGACCTCCAACCAAGCAAAATAAGACCTAATGGGTAATTTAAAAAGGTTTAACCATGGAGATCCACCCAGACATGTTGAACCTAATAAGGTCCCACACGTTTCCCTAAGATCTTTCAAGCCCTTCTAAAAGTTCTATTATATCTCTCCCCCCACAAACTCCACAAGATAGCACACTCCCCAACCCACCACAAAAAACACTCATATCACATGAAAATGAGGATGAATAAGGAACTCCCCAGTCATCTATTTGCAATCTCGATGCCTAGCCAAGCTAATGAAAACTTCTCAAAGAAACAACTCCAAACAATGTAGGCTAACTCACAACCTGAAAGGATACGATCAAGGTCCTCAGCTACCAGCCTACGATGGATGCAACACAACAACCCAGCTACATTGAGCAACCTCCTCAAAAGTTGATCGAATGTGGGGAACCTGCCTCACAAAAAAGCTTAACCTTATGATTTGTGGACTCACAAGAAGCTTAACCTGCCTCTCCACCGAATGGCATCCCCTAACCCGTTTTACTTGATACACATTTATGATTTGTGGCCTTCTCTTTACATTTGAAGGGCATGCCTCAAAATAGATCAAAGATATCACTTCAACACAGAAATTGTTAAAAAAAAAATTAAATATAATTTTAACTCCATCTAAAATAAGCCATTTAAGAACCAACCAAATGAGCCTAGCTCATTAACCTAATAACCTTGCAAATAATTTCACGAAAAATGATGTCATTTGTAGAAGGAACCCTCACATTTGAATTCAATGATATACCGTCATTGCTTTGTTGAAGCTGCAAAAGGAACCCTCACTACTTGAATGTTTTTCATCATGGTTTGTTGTAGCTGTTGCATTGAAAAGAAGTATTTCTGCATTTGGCTTGAAAAATAAGTGGTTTTATGTTGAAGATATGGATCTTAGGTTCGTCATTCCTCTTTCTTTGCTGCGAGTATTTTGGTTTGAGAAATCTTTGATGGAGCTAATGTATTGTCCTATTACGATTTTCTCCAAGGAAGAGATGGATGCGGTACTTCTTGAATTCAAAAGGGAAGATTTTATTTTGGTTGGCTTATTGAATGTGTAGTGTGGCTAATCATGGGTGGAAGAAAGGTGATTAGAGTGTCAGTTGGTTGTTTTAAGATGGCTCACCTTTTAGAATATATTGAAGGATTTTTTTTTTCCACAAAATATGAGATATCCATCTCAGATTCTCAGCCCAAGGCAAAGCATTTACCCCCAATCCCCTCATCCGACCATTTCTTTCCCCTATTCTTCATCATGGTAATCCCTCTATACCTCATAATTCTTATTGGAATCGAAAAGATAAAGATGTATTAGAATTATGTTGGGGTTTCTTCATGGTAATTTCCAGGTTGATGCACATGATGATTGGAACGAAATTAAGTTGCCTATTGTAATTCAGGTTGAGGCTACCTTTGTGCTCAACCCTTTTTGGGTTGATAAAGCTTTGTTTCAAATGGAGGATGGAAGAATTCGTGGGGACCTCAGTTCAAAAGGGAAATGGATGCACATTGGGATTTTCCATCTGAAATTTGAAGCTCGGGATCACGAGAAACCTAGCAAACCAGAATTTGGTGTAAGTGATGGCAGATGGATTAAAATTATGAACATGCCACTCCAAGAATTTGAGAACCTTCAAAGTGATTGGAGTGTATTTTGGGGGTTTGATTAGTGTTTCTTCTAAGACTCTAAACATGTTGGATTGTTGTTCTGCTTGCATAGAGGGGAAGAAGAACGCTTATGCATTCATTCCAACTTCAATTGAAATGGAGGACAAGAAATTGGGCACTTCGTTTCTAGGTTTGAGGATTTAATATCTATTGAACCTTTTTCGGTTGAGAATTTTTGTAAAAAGAATTTGGTCCATAGTGACTTTCAAATCCATTGGATGTTGAGCGTGTAAAAATGGTTGTAGAAGATGGAAAGTCCACTTGGTTTTGCCCTTTTTTTCTTTTGCCACCTTCCCCTTTTTTCTTTTGCCACCTTCCAAAAGTGGAAAATTGAAGTTGAAAATCAGTTTGCCTTTCAAATGCAGGAGGAGAGTACGACAAGTCAGAATTCAAAGTATTTTGTGTAGTTGAGGAAATTAGATTAATGAAGACAGTTTCCGGTATGGTAAGGCAAAATGGTATTGCTGAAAGGATGAACAGAACATTGAATGAGCGGGTGAGGAGTATGAGGATTCATTCTGGATTGCCAAGAACATTTTGGGTCGATGCTATAAATAGAGTAGTCTACTTGATCAATAGAGGGCCGTCAGTACCCTTGGAGTTTAAGTTGTCAGAAGAGGTATGGACAGGAAAAAAAACTCAAGTACTATCACTTGAGAACTTTTGGTTACACTATGTACATTCATGGTGATTCAGAGAAGAGAGATTGACACTGAGGTTGTGAAGTGCTGCTTCATAGGCTATAGTTCAGACATGTTCAGGTACAAGTTTTGGGATGACAAAAATAGAAAAAACCTGAGACATTGTGACGTATCTTTTGATTAAAATGTCTTGTACAAGGACAAAGAGAAGAAAGGTTCCGAGACAACGAAACAAGTGGGAGTTGAGGTTGAGTTGTAGAAATTCACGTAGTGATGCAGCAGATACTCGAGAAACTTCTGAGACCGTTGCTAAGGAACCAGAGGTGAAGCAAGTGACACCTGAGCAGGTGTTGAGAATATCCAAAAGTATCAGAGTAACAGACAGGTATTCACCTTCATTACACTATTTGAAGCTGATTGATGAAGGGAAACCAAAGTCATTTGATGAGGTCCTATAGTTTGGAGGATACAACCAAGTGGGAGCAAGCCATGGATGATGGGATGAGTTGGATGTCTAGGCTTCAGAATTGTGTTGTTCTTTTATCTATTGAAGCTGAGTACGTGGCAGTAACTGAAGCTGAAAAGGAGATGATATGGATGACAGACTATCTAAAAGAATTAGGCAAGAAGTAGTGTGAGAAGATCCTTTATACAGATAATCAGAGTGTCATACAGCTAGTGAAGAACTCGGTCTATCATTCAAAGACAAAACACATCAAAAGACGATACCATTTCACTCGCAGGATAGTGGAAGAAGGTGATATGTGTTTGAAGAAGATAGAGGGTGCAAAGAATCCAACAGACATGTTAATAAAATGTGTTGATGTTGGAAAATCGAGGTTGTGTAAAGCCTTAATTAGTCTAGTGCAGTGAAGATATTGATGGTCGTTTGAGAATGAAATTCTTGGTTCACGTGATCAGTCTCAAAGTGGGAGAATTGTTAGGTTATGGAATCTGGCTTATTTATAGCTTACTCAAAGGAAAAATATATATGGTAAATTACATATAAAGTAAATGGTCATATATAGTAAACAACTATGTCTGATATATAAAGGAAATTGAACCATATATATATATATGGTAAATCTCTAGCCAATATTCCTCATTGTATTTTCTCTCTCCTGTTTTTTGTGTTCATCTAGATTGAGTGTGTGTTGTTGTGTGATCCTAACAATAATAATAAATCTTAGGAAATGTATGCTTTATGTTAAGGAGTATTTCTTTCGATTTATGTACGGTTCATGTTTTGTTAAAGTGGAAAACCGTATGTGTTGATGATTTGGGTGTTCCATTTTTGTTTTACTGCATACTGGAATATCATCAAAGTATACATCCATGAATTTATTAAGATAGGGTGGTAAAACGTGGGTCATAAGTCTCATAAAGATACTTGGCGCATTTGATTACCCGAATGGTGTGACAAACGCGCATATGCCAACTTTCATCTTTTTATGGAGTAAGAAGTACTGGTACTGCACATGGACTTAAACTTGGTTGAATGTGTCCTTTATCGAGTTGTTCTTGAAGGATAGGATACTCTTTAGCACTCATCCTATAGTGTGGCAAATTGGCTAGAGTGGCTCTTGGATAAAAGAAATACTGAACTAATGGTTTTGATCAATTTAATCTTCGTTTTTACTAGGAAAAGTTCAATTTCTTTTAGTTAATAAATATCACAAAAATTCAAATCCCTTTTAGTCTGGATCTCAGGCCAGTGTCATTTGATAATAATTTTGTTTTTTCTTTTTTAATTAGACTTGTTTTCTCACAATTTTATATTTCTAGAGTCATCTGAATTCTTAACCAAATTGAAAAATCAAAACAAGCTTTTATCTACAATTTTTTTTTAGCTTTTAAAATTTGAGTTGAATTCTGAAAACATTTGTAAAAGGTAATTAACAAAACAGAGAAACTCGTTAGTGTTCATGAGCTTAATTTTCAGAAACTTTTATTTATTTATTATTTTTTCCTTCTCTACAGCGACTGCAGGACCTTCCTTTTCTCTTACGGAGATTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACACTGCAGTTAAGTGAATGACTCAACTTTCTTAACATTAACTATTGCTTAGAAATTATCATTTTCTAACTATTCTGTTTTTATTACCACAAAAATCTTGTTTGTGAGTTATTTTTGTATTCCCTGCTTTCATCTTGGCCCTTTCTGTTTCGTGGGCTTTTATTGTTATTATTATTCTTTCATGAAAAATTGCTTTCAATCAGTGTGAAAAGCAAGAGACTATTCTGGTGAATTGAATGTCAAGCAGCTGTAGTTGTTCCTGATTATAAATTGTAACTGCTGTAATTTGTTTACAGATGTTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCCGAAGGTAAATCTTCTCCCCCCCATCGATAGTGAGTCTAGCCTATATCAAATGTCAGCATTTTAGTGTAATCATTGATTTCCTAATGGATTTCCTTTTGGCTTGAATGTTTATGTGCAGCATTACTAGGGTTATTTGGACTGATGGATGATGCCTTTATACTGCTCATCTGCTTCCTTTATGTTGCTGCTTTATACCGATCGGTACTCCATAATCGCCATGGAGGAACTTGAGTTGTCCTTGCAGCTTTGCCATAACTGTAAGAAAGTAGAGTAGCCATTTTTTTTGTTCTTTTATACACTTCGTTTCCATCCTGCTTAACTTGTAAGGCCAAACTTTTATTTGAATCTTTCTTGCATATGGAATTCACTTGTGTTGTGTTCATTTTGTGTTTGGGAATATGAAGCTTAAGAACCACAAAAATTGTGTTTTCAATTAATATTATATATACATATGTTCGTATCCTTTCTAAAAATAATGAGTTTTGTTCTGCTTTCTTTTTCGATCTTTTTGAATCTTGTGTGGAGTTCGTTATTTTTTAAATTTATAGTTTTAGATTTTAGTACAAAATTGAATTCAAATATAATATAATTTAGTACACTGTATAATCTTATTAATAGTATTTTCTAAATATATTAAGATTGACCTCTTGTCTAGAATCCAGAGCCTAGGAAACAGAAAAAAAATGGTCCTTCAATGCACGAGCTATCTTGTCTAGAATCCAAATCCCAGTAAATAGTAGTTGGTCCTTGAATGCACGTTAGGGCGTGATGCTCAGTTTTGCTCCTAGATTTTGCACTCATGAAGTAGAAAATTTGTCAGGAATTGTTTCCTTCAGTTTCCTAGAGGAATTCAGTCAATATGAACATCCTATGATCGTTAAGTACAATACGGATCCAAGGGATCTTTTAGGAGGCTCATAAAGAGCATAAGAGCTAGCTACCTTCTGGAACTTGAAAAAGTAGATGATTCAGGTTATGCTAGATGTCTAACCTTGTTTTATAACCCGTGATCAATAGTTTCAACAAATTTCCTTACGGAGACTGTGAAGGGACTTACCACTTAACTCCTTATCATGAACTCGTCCTGCGGGGGGGGTGAAGATCATTTATGGGCCACCCCTATATGTGTTCTATGATGGTGTAGGGATTAGTAGTCAAGTCAGTAGCTTCTATTATTGAACCTATCCGGTCTACATTCTTTAATAGTAGATTTTTAAGAGATTAGTCAGGGTTTGCTCTGAACACAATTGTGCCAGAAACACACCTTATATGGAAAGATCGATAGGATAATCTCCCTCACAAGCGCTCTAAACATAATTGTGCCACAAACACACCTCATATGGGTAACAAGTGCTCTGTACACAATTGTGCCACAAACACACCCCATATGAGAAGATCAATAGGATAATCTCCCTAACAAAGCTTGCACAAGAGAACTGAGCTAAGACTAAAGCGCTAGAGCTAGAACAGTTTCAAGTTGACCTAGGATAGTACGTTTTTAGTAAATCGAGCACCCTAAGGTTGTGAATGACAATTAGAGATTGAGACCCATGTGTACCTAAAGAATGGATTAGCTCGAGAAGTTAGTCTTAAACATCCTTGAAAAGAGACCAGATTCAAACTGCTTAAATGCCCCTAAGAACTTAGTAGACTTTCACGGCTTCAAAGGACCACCAAAGAAGCTTTCTAGGCTATAAGCAGGATGAACAGTGTCATTAGACTCTCCACTATTTTTTCCACTTCGATAGTAGTACTATTGAGTTAGGCATAGGCAAGTTAGGGTAGTGCGTGCCCTAACCTTGTGGAAGTGGCTAGGGATCTCCTAAACAAGGGCACTGTGTTATAATCCCGCACCTAAGAGGGGAGTGTGAGACTATGTAGGTTATCCTAGTAGTGGGGATCACATCCTCCAAACTTCGATGACTTTATGGTCCTATAGGAGGGTTTGCTAACTAACATTACATGGATGATGTTTAAACTAGAAAATACCATATTATCTCATCATAACTTAATGAGGTAACGCCTCAACCTAGATCGCTAGTTATTCACTGCGTAAGCAAAGCAAGCTACGTAAGTTAAATGACAGAAAGGTTAAAAAAAACATGTACCCTTGGGGGTAAGCTTTAGATCAGAAATGCTCGAAACTTCGAGACATCTCAAATGCTCAAATAGGAGTAAAGACTAGACCCAAACTTTATAGACCCTAGAGAAAAACTTGTGGAATACCTACTAGGATGAGAATGCAATGAGAGCATATAAGTTGATTCGTTACCAAGTCTTTTTTATATTCACTCATTTTCCTTTTTTTTTCTCAGGATTTGTAGGTTGCTGACCGAGGGGGGAAGCGTTCAAGAGCTATGCGATTGCAGAGAGGGTCGTTTTGAAGCAGTCGTCCATTTTTATATTTTGAGTCGTTTGTATTTCGTTTTGTAATTGTATCCCCAACCCATTTTTTTTATTTGTAATAAAATTGAACAAGATAGTCTTATAATTGAATTTTACTTTGATTTGGTGTTGTTTGTTGATCTTTAATTTGATTTTAAT

mRNA sequence

ATACTTGGAAGATTAGATTAGGCAATAATAAAATTTAGAATCTATGGGCAGTTCTTGTACATCAAACACGGATTGAAACTTCATCGGTAAGAAAAGAAATCACGGCTCTGAAATTGGTCTCAAGGAACACGCCTCAGGTTTGAAATTCCAAGTTTGGAATACGTTCATACTCTCGACAAATCAGAATTGGAAGATTTTGATACACAATATGGACGGCCCCCCTGCGGGCGATATCTGTTCGATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAACTGCTCGCACTGGTTCTGCGGAAGGTGCATAATGCTTGTTTGGGATCATGGATCACCACTGCAGCCATGTAAATGCCCCTTATGTCGCCGACAGATCACTTTATTGGTTCCTTCTGAGGCTTCAGCAACGCAGCAAAGTGACCCTGAGGTTGCTCGTGTTCTTAACAATATAAGGAATTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAATCAGCGACTGCAGGACCTTCCTTTTCTCTTACGGAGATTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACACTGCAATGTTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCCGAAGCATTACTAGGGTTATTTGGACTGATGGATGATGCCTTTATACTGCTCATCTGCTTCCTTTATGTTGCTGCTTTATACCGATCGGTACTCCATAATCGCCATGGAGGAACTTGAGTTGTCCTTGCAGCTTTGCCATAACTGATTTGTAGGTTGCTGACCGAGGGGGGAAGCGTTCAAGAGCTATGCGATTGCAGAGAGGGTCGTTTTGAAGCAGTCGTCCATTTTTATATTTTGAGTCGTTTGTATTTCGTTTTGTAATTGTATCCCCAACCCATTTTTTTTATTTGTAATAAAATTGAACAAGATAGTCTTATAATTGAATTTTACTTTGATTTGGTGTTGTTTGTTGATCTTTAATTTGATTTTAAT

Coding sequence (CDS)

ATGGACGGCCCCCCTGCGGGCGATATCTGTTCGATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAACTGCTCGCACTGGTTCTGCGGAAGGTGCATAATGCTTGTTTGGGATCATGGATCACCACTGCAGCCATGTAAATGCCCCTTATGTCGCCGACAGATCACTTTATTGGTTCCTTCTGAGGCTTCAGCAACGCAGCAAAGTGACCCTGAGGTTGCTCGTGTTCTTAACAATATAAGGAATTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTAAATCAGCGACTGCAGGACCTTCCTTTTCTCTTACGGAGATTGCTTCGGGAACTCCTCAATCCACAGAGATCTCTTCCTCTTGTCATTAGAGCACGTGTTTACACTGCAATGTTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCCGAAGCATTACTAGGGTTATTTGGACTGATGGATGATGCCTTTATACTGCTCATCTGCTTCCTTTATGTTGCTGCTTTATACCGATCGGTACTCCATAATCGCCATGGAGGAACTTGA

Homology

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BLAST of CmoCh01G009520 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVP----SEAS 69
           C +C  +   P + NC H FCG CI+  W +G+ L    CP+CR+ +TLL P    SE S
Sbjct: 88  CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQS 147

Query: 70  ATQQSDP-EVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVI 129
           A     P E   +L +I +YNR F G    L  RL+D+P LLR   RE+ +    L  + 
Sbjct: 148 AVAADSPVEPTLILTDISDYNRRFSGQPRSLLDRLRDVPTLLRHAFREMFSVG-GLFWMF 207

Query: 130 RARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNRHGG 185
           R R+   +  ++ Y VSP+D +PE +LGL G +DD F++L+ F+Y++ +YR V+  R  G
Sbjct: 208 RVRILLCVCGALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266

[Close]

BLAST of CmoCh01G009520 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-29
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQ 69
           C +C  +   P + NC H FCG CI+  W +G+ L    CP+CR+ +TLL P    AT Q
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPL-FGATDQ 146

Query: 70  SDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVY 129
            D +   +L     YNR F G    L  R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 147 EDAQ--NILQEATGYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFSVG-GLFWMFRIRIV 206

Query: 130 TAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNR 182
             +  +++Y VSP+DIIPEAL G+ G +DD F+L +  +Y++ +YR V+  R
Sbjct: 207 LCLLGALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of CmoCh01G009520 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-29
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQ 69
           C +C  +   P + NC H FCG CI+  W +GS L    CP+CR+ +TL+ P    AT+Q
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPL-FQATEQ 146

Query: 70  SDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVY 129
            D +   +L     YNR F G    L  R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 147 EDSQ--NILREAIGYNRRFSGQPRSLMDRIMDLPTLLRHAFREMFS-VGGLFWMFRIRIV 206

Query: 130 TAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNR 182
             +  ++ Y VSP+DIIPEA+ GL G +DD F+L +  +Y++ +YR V+  R
Sbjct: 207 LCLLGALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of CmoCh01G009520 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 9.0e-29
Identity = 63/172 (36.63%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+ +TLL+P      Q 
Sbjct: 88  CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLPVFGENDQS 147

Query: 70  SDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVY 129
            D  V  +  +I +YNR F G    + +R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 148 QD--VVSLHQDISDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFS-VGGLFWMFRIRII 207

Query: 130 TAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNR 182
             +  +  Y +SP+D +PEAL G+ G +DD F++ +  +Y++ +YR V+  R
Sbjct: 208 LCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 256

[Close]

BLAST of CmoCh01G009520 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 63/172 (36.63%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+ +TLL+       Q 
Sbjct: 87  CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 146

Query: 70  SDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVY 129
            D  V R+  +I +YNR F G    + +R+ DLP LLR   RE+ +    L  + R R+ 
Sbjct: 147 QD--VLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREMFS-VGGLFWMFRIRII 206

Query: 130 TAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHNR 182
             +  +  Y +SP+D +PEAL G+ G +DD F++ +  +Y++ +YR V+  R
Sbjct: 207 LCLMGAFFYLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255

[Close]

BLAST of CmoCh01G009520 vs. TrEMBL
Match: B9IQE5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-76
Identity = 135/185 (72.97%), Postives = 156/185 (84.32%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPP  D CSICHG FN  CQANCSHWFCG CIMLVW HGS LQPCKCPLCRRQITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++SDP+VA VL  I  YN  FGGN++GL QR+QDLPFLLRRLLRE+++PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIRARVY A+ LS +Y +SPIDIIPE +LG+ GL+DD  ++LICFL+VAA+YR+VLH 
Sbjct: 121 PLVIRARVYIAVVLSAIYVISPIDIIPEGILGIVGLLDDLLVVLICFLHVAAIYRAVLHY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. TrEMBL
Match: A0A067JVY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.2e-75
Identity = 135/185 (72.97%), Postives = 155/185 (83.78%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS +QPCKCPLCRRQITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           PSEAS  ++ +PEVA +L  +  YNR FGG +TGL QR+QDLPFLLRRLLRE+++PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           P VIRARVY AM LS VY +SP+DIIPE  LG+ GL+DD  I LICFL+VAA+YRSVL+ 
Sbjct: 121 PFVIRARVYIAMTLSAVYILSPVDIIPEGFLGIVGLLDDIIIGLICFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.7e-74
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MEGPPVNDCCSICHGSFNVPCQANCSHWFCGNCIMLVWHHGSSLHPCKCPLCRRHITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++ +  VA +L  +  YNR+FGG S GL QRLQDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERHNSAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREMTDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVI+ARVY AMFLS +Y  SPIDIIPEA+LG+ GL+DD  I+L+CFL+VAA+YRSVL+ 
Sbjct: 121 PLVIKARVYLAMFLSTIYIFSPIDIIPEAILGIVGLLDDLLIVLVCFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. TrEMBL
Match: A0A0D2S8R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-74
Identity = 131/185 (70.81%), Postives = 152/185 (82.16%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSP Q CKCPLCRRQITLLV
Sbjct: 1   MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++ +P VA +L  +  YNR+FGG S GL QRLQDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PGEASLRERHNPAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREITDPQRTL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIRAR+Y AMFLS +Y  SPIDIIPEA+LG+ GL+DD  I L+ FL+VA +YRSVL++
Sbjct: 121 PLVIRARIYLAMFLSAIYVFSPIDIIPEAILGVVGLLDDLLIALVGFLHVATIYRSVLYS 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. TrEMBL
Match: A0A0B0PUN2_GOSAR (RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-74
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSP Q CKCPLCRRQITLLV
Sbjct: 1   MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++ +P VA VL  +  YNR+FGG S GL QRLQDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PGEASLRERHNPAVAEVLEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREITDPQRTL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIRAR+Y AMFLS +Y  SPIDIIPEA+LG+ GL+DD  I L+ FL+VA +YRSVL++
Sbjct: 121 PLVIRARIYLAMFLSAIYIFSPIDIIPEAILGVVGLLDDLLIALVGFLHVATIYRSVLYS 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-73
Identity = 128/185 (69.19%), Postives = 148/185 (80.00%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS LQPCKCPLCRR I+LLV
Sbjct: 1   MNSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           PSE +   ++D  V  VL N+  YNR FGG S+ L QR+QDLPFLLRRLLRE+++PQR+L
Sbjct: 61  PSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIRARVY AM LS VY +SPIDIIPE +LG+ GL+DD  I LICFL+VAALYRSVL+ 
Sbjct: 121 PLVIRARVYIAMILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYF 180

Query: 181 RHGGT 186
           RH G+
Sbjct: 181 RHAGS 185

[Close]

BLAST of CmoCh01G009520 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 220.3 bits (560), Expect = 9.8e-58
Identity = 105/155 (67.74%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 31  GRCIMLVWDHGSPLQPCKCPLCRRQITLLVPSEASATQQSDPEVARVLNNIRNYNRHFGG 90
           G CIMLVW HGS L+PCKCPLCRR I+LLVPSE +   ++D  V+ VL+++  YNR FGG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG 108

Query: 91  NSTGLNQRLQDLPFLLRRLLRELLNPQRSLPLVIRARVYTAMFLSVVYTVSPIDIIPEAL 150
            S+GL QR+QDLPFLLRRLLRE+++PQR+LPLVIRARVY A+ LS +Y +SPIDIIPE +
Sbjct: 109 QSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIALILSAIYIISPIDIIPEGV 168

Query: 151 LGLFGLMDDAFILLICFLYVAALYRSVLHNRHGGT 186
           LG+ GL+DD  I LICFL+VAALYRSVL++RHGG+
Sbjct: 169 LGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 203

[Close]

BLAST of CmoCh01G009520 vs. TAIR10
Match: AT4G33940.1 (AT4G33940.1 RING/U-box superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-33
Identity = 66/174 (37.93%), Postives = 103/174 (59.20%), Query Frame = 1


Query: 2   DGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLVP 61
           + PP  D+C IC G F  PC+ NC HW+CG CI+  W++ +  +PCKCP+C R IT L P
Sbjct: 66  ESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSP 125

Query: 62  SEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSLP 121
            E S  ++ + EV  VL+ +R YNR F G  TG  Q++ +LPFL++R++  +++   +  
Sbjct: 126 -EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQKVHELPFLVKRMVWHMMDTDVNNL 185

Query: 122 LVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYR 176
                R++ AMF+S +YT +  + IP     +  + D A I +I  L +  +YR
Sbjct: 186 YFHEVRIF-AMFMSTLYTAAEFNFIPTGGFRIVTVFDYAAIAMILILRLVGIYR 237

[Close]

BLAST of CmoCh01G009520 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 1.8e-93
Identity = 167/185 (90.27%), Postives = 173/185 (93.51%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPPAGDICSICHGRFN PCQANCSHWFCG+CIMLVWDHGSPLQPCKCPLCRR ITLLV
Sbjct: 1   MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           PSE S  QQSDPEVARVLNNIR YNRHFGGNST L+QRLQDLPFLLRRLL+ELLNPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLQELLNPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIR RVY AM LSVVYTVSPIDIIPEALLGLFGLMDD  ILLICFLY+AA+YRSVL+N
Sbjct: 121 PLVIRTRVYIAMVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180

Query: 181 RHGGT 186
           RHGGT
Sbjct: 181 RHGGT 185

[Close]

BLAST of CmoCh01G009520 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 5.7e-92
Identity = 164/185 (88.65%), Postives = 170/185 (91.89%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPP GDICSICHGRFN PCQANCSHWFCG+CIMLVWDHGSPL PCKCPLCRR ITLLV
Sbjct: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           PSE S  QQSDPEVARVLNNIR YNRHFGGNST L+QRLQDLPFLLRRLLREL NPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIR RVY AM LSV+YTVSPIDIIPEALLGLFGLMDD  ILLICFLY+AA+YRSVL+N
Sbjct: 121 PLVIRTRVYIAMVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYN 180

Query: 181 RHGGT 186
           RHGGT
Sbjct: 181 RHGGT 185

[Close]

BLAST of CmoCh01G009520 vs. NCBI nr
Match: gi|224146326|ref|XP_002325966.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-76
Identity = 135/185 (72.97%), Postives = 156/185 (84.32%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPP  D CSICHG FN  CQANCSHWFCG CIMLVW HGS LQPCKCPLCRRQITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++SDP+VA VL  I  YN  FGGN++GL QR+QDLPFLLRRLLRE+++PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVIRARVY A+ LS +Y +SPIDIIPE +LG+ GL+DD  ++LICFL+VAA+YR+VLH 
Sbjct: 121 PLVIRARVYIAVVLSAIYVISPIDIIPEGILGIVGLLDDLLVVLICFLHVAAIYRAVLHY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. NCBI nr
Match: gi|802716459|ref|XP_012085009.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas])

HSP 1 Score: 290.8 bits (743), Expect = 1.7e-75
Identity = 135/185 (72.97%), Postives = 155/185 (83.78%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS +QPCKCPLCRRQITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           PSEAS  ++ +PEVA +L  +  YNR FGG +TGL QR+QDLPFLLRRLLRE+++PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           P VIRARVY AM LS VY +SP+DIIPE  LG+ GL+DD  I LICFL+VAA+YRSVL+ 
Sbjct: 121 PFVIRARVYIAMTLSAVYILSPVDIIPEGFLGIVGLLDDIIIGLICFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

[Close]

BLAST of CmoCh01G009520 vs. NCBI nr
Match: gi|590603943|ref|XP_007020133.1| (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 [Theobroma cacao])

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-74
Identity = 132/185 (71.35%), Postives = 152/185 (82.16%), Query Frame = 1


Query: 1   MDGPPAGDICSICHGRFNTPCQANCSHWFCGRCIMLVWDHGSPLQPCKCPLCRRQITLLV 60
           M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MEGPPVNDCCSICHGSFNVPCQANCSHWFCGNCIMLVWHHGSSLHPCKCPLCRRHITLLV 60

Query: 61  PSEASATQQSDPEVARVLNNIRNYNRHFGGNSTGLNQRLQDLPFLLRRLLRELLNPQRSL 120
           P EAS  ++ +  VA +L  +  YNR+FGG S GL QRLQDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERHNSAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREMTDPQRSL 120

Query: 121 PLVIRARVYTAMFLSVVYTVSPIDIIPEALLGLFGLMDDAFILLICFLYVAALYRSVLHN 180
           PLVI+ARVY AMFLS +Y  SPIDIIPEA+LG+ GL+DD  I+L+CFL+VAA+YRSVL+ 
Sbjct: 121 PLVIKARVYLAMFLSTIYIFSPIDIIPEAILGIVGLLDDLLIVLVCFLHVAAIYRSVLYY 180

Query: 181 RHGGT 186
           RHGG+
Sbjct: 181 RHGGS 185

The following BLAST results are available for this feature:

BLAST of CmoCh01G009520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN170_DANRE	2.1e-30	38.89	E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1	[more]
RN170_XENLA	2.4e-29	38.95	E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1	[more]
RN170_XENTR	6.9e-29	38.95	E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1	[more]
RN170_BOVIN	9.0e-29	36.63	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2	[more]
RN170_HUMAN	2.0e-28	36.63	E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2	[more]

BLAST of CmoCh01G009520 vs. TrEMBL


Match Name	E-value	Identity	Description
B9IQE5_POPTR	1.4e-76	72.97	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1	[more]
A0A067JVY1_JATCU	1.2e-75	72.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1	[more]
A0A061FKC6_THECC	1.7e-74	71.35	RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is...	[more]
A0A0D2S8R7_GOSRA	3.7e-74	70.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1	[more]
A0A0B0PUN2_GOSAR	3.7e-74	71.35	RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1	[more]

BLAST of CmoCh01G009520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72175.1	1.7e-73	69.19	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G22510.2	9.8e-58	67.74	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT4G33940.1	4.9e-33	37.93	RING/U-box superfamily protein	[more]

BLAST of CmoCh01G009520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126217\|ref\|XP_008463070.1\|	1.8e-93	90.27	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
gi\|449441207\|ref\|XP_004138374.1\|	5.7e-92	88.65	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]	[more]
gi\|224146326\|ref\|XP_002325966.1\|	2.0e-76	72.97	zinc finger family protein [Populus trichocarpa]	[more]
gi\|802716459\|ref\|XP_012085009.1\|	1.7e-75	72.97	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]	[more]
gi\|590603943\|ref\|XP_007020133.1\|	2.4e-74	71.35	RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR010652	DUF1232
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G009520.1	CmoCh01G009520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 10..52 score: 0.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 10..53 score: 10
IPR010652	Protein of unknown function DUF1232	PFAM	PF06803	DUF1232	coord: 130..164 score: 2.
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 7..85 score: 1.5
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 25..34 scor
None	No IPR available	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 1..185 score: 1.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 8..59 score: 2.09

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G009520	Cucsa.365920	Cucumber (Gy14) v1	cgycmoB1003
CmoCh01G009520	CmaCh01G009330	Cucurbita maxima (Rimu)	cmacmoB471
CmoCh01G009520	MELO3C025008	Melon (DHL92) v3.5.1	cmomeB401
CmoCh01G009520	ClCG08G002480	Watermelon (Charleston Gray)	cmowcgB429
CmoCh01G009520	CSPI06G02530	Wild cucumber (PI 183967)	cmocpiB477
CmoCh01G009520	Lsi08G002360	Bottle gourd (USVL1VR-Ls)	cmolsiB440
CmoCh01G009520	Cp4.1LG02g09420	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G009520	MELO3C025008.2	Melon (DHL92) v3.6.1	cmomedB462
CmoCh01G009520	CsaV3_6G002730	Cucumber (Chinese Long) v3	cmocucB0566
CmoCh01G009520	Cla97C08G146470	Watermelon (97103) v2	cmowmbB484
CmoCh01G009520	Bhi04G001765	Wax gourd	cmowgoB0571
CmoCh01G009520	CsGy6G002590	Cucumber (Gy14) v2	cgybcmoB753
CmoCh01G009520	Carg27787	Silver-seed gourd	carcmoB1010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G009520	Watermelon (97103) v2	cmowmbB498
CmoCh01G009520	Wax gourd	cmowgoB0621
CmoCh01G009520	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G009520	Cucumber (Chinese Long) v2	cmocuB473
CmoCh01G009520	Watermelon (Charleston Gray)	cmowcgB379
CmoCh01G009520	Watermelon (97103) v1	cmowmB405
CmoCh01G009520	Bottle gourd (USVL1VR-Ls)	cmolsiB397