MELO3C025008 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025008
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING finger protein 170
Location	chr3 : 17084342 .. 17084629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATATATATATATATAGATATAGATATATTTTTCGACCCAGATACCTGTTTGTACTTTCTGTTGGTTTATTGGTTTCTTATGAATTTGTTTTTTCTGGCTCGACTGTTTATGTGCAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCAGTACTTTATAATCGTCACGGAGGAACTTGA

mRNA sequence

ATGGTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCAGTACTTTATAATCGTCACGGAGGAACTTGA

Coding sequence (CDS)

ATGGTTCTAAGTGTAGTCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCAGTACTTTATAATCGTCACGGAGGAACTTGA

Protein sequence

MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT*

Homology

[Close]

BLAST of MELO3C025008 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.8e-08
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 4   SVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGG 54
           ++ Y VSP+D +PE +LGL G +DD  ++L+ F+YI+ MYR V+  R  G
Sbjct: 217 ALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQRLAG 266

[Close]

BLAST of MELO3C025008 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-08
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1


Query: 4   SVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 51
           +++Y VSP+DIIPEAL G+ G +DD+ +L +  +YI+ MYR V+  R
Sbjct: 208 ALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of MELO3C025008 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 4   SVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 51
           ++ Y VSP+DIIPEA+ GL G +DD  +L +  +YI+ MYR V+  R
Sbjct: 208 ALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of MELO3C025008 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-06
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 7   YTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 51
           Y +SP+D +PEAL G+ G +DD  ++ +  +YI+ MYR V+  R
Sbjct: 213 YLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 256

[Close]

BLAST of MELO3C025008 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-06
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 1


Query: 7   YTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNR 51
           Y +SP+D +PEAL G+ G +DD  ++ +  +YI+ MYR V+  R
Sbjct: 212 YLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255

[Close]

BLAST of MELO3C025008 vs. TrEMBL
Match: U5FS44_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11010g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.6e-15
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 1  MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
          MVLS VY +SP+DIIPE +LG+ GL+DD+LI+LICFL++AA+YRSVLY RHGG+
Sbjct: 34 MVLSAVYIISPVDIIPEGILGIVGLLDDLLIVLICFLHVAAIYRSVLYYRHGGS 87

[Close]

BLAST of MELO3C025008 vs. TrEMBL
Match: A0A067GW82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-15
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGG 54
           M+ S VY  SPIDIIPEALLG+ GL+DD+LI L+CFL++AA+YR+VLYNRHGG
Sbjct: 100 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGG 152

[Close]

BLAST of MELO3C025008 vs. TrEMBL
Match: V4T8S4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002598mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-15
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGG 54
           M+ S VY  SPIDIIPEALLG+ GL+DD+LI L+CFL++AA+YR+VLYNRHGG
Sbjct: 134 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGG 186

[Close]

BLAST of MELO3C025008 vs. TrEMBL
Match: A0A067H8R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-15
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGG 54
           M+ S VY  SPIDIIPEALLG+ GL+DD+LI L+CFL++AA+YR+VLYNRHGG
Sbjct: 134 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHGG 186

[Close]

BLAST of MELO3C025008 vs. TrEMBL
Match: Q8LDL6_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At1g22510 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-14
Identity = 36/54 (66.67%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           ++LS +Y +SPIDIIPE +LG+ GL+DD+LI LICFL++AA+YRSVLY+RHGG+
Sbjct: 132 LILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 185

[Close]

BLAST of MELO3C025008 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 85.9 bits (211), Expect = 8.5e-18
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           ++LS +Y +SPIDIIPE +LG+ GL+DD+LI LICFL++AA+YRSVLY+RHGG+
Sbjct: 150 LILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHGGS 203

[Close]

BLAST of MELO3C025008 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 83.2 bits (204), Expect = 5.5e-17
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           M+LS VY +SPIDIIPE +LG+ GL+DD+LI LICFL++AA+YRSVLY RH G+
Sbjct: 132 MILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYFRHAGS 185

[Close]

BLAST of MELO3C025008 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT
Sbjct: 132 MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]

BLAST of MELO3C025008 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-21
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           MVLSV+YTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT
Sbjct: 132 MVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]

BLAST of MELO3C025008 vs. NCBI nr
Match: gi|1012179668|ref|XP_015967830.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis duranensis])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-15
Identity = 39/54 (72.22%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           M+LSVVY +SPIDIIPE +LG+ GL+DD+LI+LICFL++AA+YRSVLY RHGG+
Sbjct: 134 MILSVVYIISPIDIIPEGILGIVGLLDDLLIVLICFLHVAALYRSVLYLRHGGS 187

[Close]

BLAST of MELO3C025008 vs. NCBI nr
Match: gi|1021522408|ref|XP_016204594.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis ipaensis])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-15
Identity = 39/54 (72.22%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           M+LSVVY +SPIDIIPE +LG+ GL+DD+LI+LICFL++AA+YRSVLY RHGG+
Sbjct: 134 MILSVVYIISPIDIIPEGILGIVGLLDDLLIVLICFLHVAALYRSVLYLRHGGS 187

[Close]

BLAST of MELO3C025008 vs. NCBI nr
Match: gi|727608758|ref|XP_010477510.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Camelina sativa])

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-15
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 55
           M+LS +Y +SPIDIIPE +LG+ GL+DD+LI LICFLY+AA+YRSVLY RHGG+
Sbjct: 132 MILSAIYIISPIDIIPEGVLGIIGLLDDLLIALICFLYVAALYRSVLYFRHGGS 185

The following BLAST results are available for this feature:

BLAST of MELO3C025008 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN170_DANRE	5.8e-08	46.00	E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1	[more]
RN170_XENLA	7.5e-08	48.94	E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1	[more]
RN170_XENTR	2.9e-07	48.94	E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1	[more]
RN170_BOVIN	1.9e-06	43.18	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2	[more]
RN170_HUMAN	1.9e-06	43.18	E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2	[more]

BLAST of MELO3C025008 vs. TrEMBL


Match Name	E-value	Identity	Description
U5FS44_POPTR	7.6e-15	70.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11010g PE=4 SV=1	[more]
A0A067GW82_CITSI	9.9e-15	71.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1	[more]
V4T8S4_9ROSI	9.9e-15	71.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002598mg PE=4 SV=1	[more]
A0A067H8R0_CITSI	9.9e-15	71.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1	[more]
Q8LDL6_ARATH	1.7e-14	66.67	Putative uncharacterized protein OS=Arabidopsis thaliana GN=At1g22510 PE=2 SV=1	[more]

BLAST of MELO3C025008 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22510.2	8.5e-18	66.67	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G72175.1	5.5e-17	68.52	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

BLAST of MELO3C025008 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126217\|ref\|XP_008463070.1\|	2.7e-21	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
gi\|449441207\|ref\|XP_004138374.1\|	3.5e-21	98.15	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]	[more]
gi\|1012179668\|ref\|XP_015967830.1\|	3.7e-15	72.22	PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis duranensis]	[more]
gi\|1021522408\|ref\|XP_016204594.1\|	3.7e-15	72.22	PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis ipaensis]	[more]
gi\|727608758\|ref\|XP_010477510.1\|	6.4e-15	70.37	PREDICTED: E3 ubiquitin-protein ligase RNF170 [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010652	DUF1232

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025008T1	MELO3C025008T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010652	Protein of unknown function DUF1232	PFAM	PF06803	DUF1232	coord: 1..33 score: 2.
None	No IPR available	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 1..54 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025008	Cla001011	Watermelon (97103) v1	mewmB312
MELO3C025008	ClCG08G002480	Watermelon (Charleston Gray)	mewcgB297
MELO3C025008	Cla97C08G146470	Watermelon (97103) v2	mewmbB304
MELO3C025008	Bhi04G001765	Wax gourd	mewgoB347
MELO3C025008	CSPI06G02530	Wild cucumber (PI 183967)	cpimeB468
MELO3C025008	CmaCh01G009330	Cucurbita maxima (Rimu)	cmameB414
MELO3C025008	CmoCh01G009520	Cucurbita moschata (Rifu)	cmomeB401
MELO3C025008	Lsi08G002360	Bottle gourd (USVL1VR-Ls)	lsimeB471
MELO3C025008	Cp4.1LG02g09420	Cucurbita pepo (Zucchini)	cpemeB512
MELO3C025008	CsGy6G002590	Cucumber (Gy14) v2	cgybmeB409
MELO3C025008	CsaV3_6G002730	Cucumber (Chinese Long) v3	cucmeB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025008	Silver-seed gourd	carmeB0678
MELO3C025008	Cucumber (Gy14) v1	cgymeB592
MELO3C025008	Cucurbita maxima (Rimu)	cmameB026
MELO3C025008	Cucurbita maxima (Rimu)	cmameB410
MELO3C025008	Cucurbita moschata (Rifu)	cmomeB015
MELO3C025008	Cucumber (Chinese Long) v2	cumeB415
MELO3C025008	Cucurbita pepo (Zucchini)	cpemeB721