ClCG08G002480 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002480
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RING finger protein
Location	CG_Chr08 : 5265408 .. 5269024 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCCAGCGATGGTGCTTGAAAGACGATCCCGCAATGGCGCTAGGGTGGACAGCAGACACGGACCTCATTATCAGTGCTAGGGTTGAAGGATTAGCAGCGGTGGCGATGAGTTGGTGACCTAGACAGCGGCAACGGATGGCTCCATCGGCGTCGGTAGGTTTGAAACATCACAGCAGTGGTGGAGCTAGGGTTACGCGATGGCGGCGACGCTAGGGTTCAGTGACCTGAGGTACTGGTCGACAACTTCTTGGATGCGGACCCCGCGGCAAATCTTGCCTAGAATCATTTTCGTCGACGACAACGAGGGCTTCTAGGGTTTCGCCACCACGCTCTGATACCATATTGAAATTAGGAGAAAAAAGAAATACTAGGTTTACGTGAAAAAACCCTTGTAAAGGAAGAAACTTCACGATTTAATTTTTCTCTTATAATTTTGATACACAATAATGTTACAAGAGGTGAAAATAAATAGAGACTCTAAAGAGCCCTAAACAATACAAGGAAAGAATATTAGGGAACATAAAAGGAAAAAATACACAGTATAAAATCTACAAAAAAAAGTCTCCAAATATCTTCTCTTATTTTTCTCAAAGCCTCTTGAATTCTGTCTTTGAGTTTTGTCAACCTACACGAAGAAAGTAGGAAACGCAAAGAGGAATGTCTTCTTTTGGAAATTGCATATTTTGACAATAAATCAGAATTGGATGCTTTGTCTTCTCATGAACTTCAACTTCTTTCATATGCAAAAAGTGAGCTAATGGGTCTTTATTTGGCTGAGGGGAGAAACATGATTCTGAAAGTTCCAATGGCTCCAGGTAGGTGATGGAAATACAGTCTCATTTCATTAATTCAACAAAAAGACTTGTTTCTGTTTAAGAAAAAAGTAGGTGATGAAAATACGAAATTCTTCCACTGTTTTTTGGCAGAAAAGAAAAGGAAATTGTTAATTTCAGAACTCAGATGGTTGCTCTTTTTGTTCATTTGGAGGAATTATAGTTGAAATTCTTGGCCTTTTCAAATCATTATATTAGAAATTTCCTTCAAATCATTATATTAGAAATTTCCGGTGGGTTTTCTCCAAATCTTTCAAGGGTAATGTTCTTCAGTTACTAATTGGCCTACCATTGGCTCCAAATATCAAAGTTTTGTGGATTAATGCAATTGAAGTACTTTCTGAATTTTAGCTGAAAAGATTCCAACGGATCTTTCATAGAAAACATATCTCTTGACTTGACCGTGTCGTATCAACTCGCCTTATGACTTCTTTTCTGGTTTCTCTTTCTAAGCCTTTTGTTGATTTTTCATTATAAATTTATAAGATACATGTCTTAACTGGATTGCATTCTTTCCTCCTTTGTAATTTATATTTTTCATTAGCTTGCTTTTATTATTTTTGTTTTCACTCTTTGGTGGAGCTTATATCTTTTAAGCATTAATCATTTTTCATTTCATCAATGAAAAATTTCATAACAACCTAGGGAATGGGGATAGAGGGGAGCCCTGCCCAAAGAAGTAACATTTGCCTTCCCCTCGTTAGTGATCATTACAAAGACTGTAATTAGAAAAGAATTTGGGATGGTTTGGGTACCACCAAAATGTGGTAAGTTTCATACTATTACAAAAGGATTTTAAAGTAAAAAATTTATACTCAAATGATTTCTTTTACTCCGGATATGCCATAGGAGGCCTTCAGCTGTGCAGCTCCACAGGGTTTTGGTCTTCCCTTTGATATTCCAACCTCTTAGAGCTTCTGCAGTCCAATCCTCAATTCTGTCGGGAAGACAACATAGCTCCCCCGCTTCATTAAAAAATAAAGTTCCAACTACCTGCTGCCAAAGGGCAGTGGAGAAAGAGGTGGTCCAAAGACTCACTCTGCTCTCTGAAGCAACAACAGGAAATGATGGGTGAGATTCTTACTGGATTTTTTTTTGCAATCTATCCATGGTATTTAGGCATCTGTATGCTAGACAGTAAACACCACTAGAATGCATTTGCTTTCTTTGGGATTTTAAAATTCCAGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGGTTCAAAAGCACTGATCTGGAAGAAAAAAGGCCTGATTTATCTAGGGTCTACGTGATTTTGTCTTGCTCAGTCCCCATAATGGATAAAAAGAGGAGCTCATCTTCTCAAACAACGCCAGTCAACTACCCACTTCATAGTCAAATAGACCTCTTCTTAAATTGAGATCTCAGGTTTGCTGAAAAGCCACTCAGCAATCAGAAAGGGAAGCTTCCATTCTTAGTGCGCTGTTCCTTTGAAAAGTGACCTCTCTGAAGGCCTCAGCAAACTGTAGAACGAGGAGACCTCCATTTAACAAGGCGTGAGATCTATTATTGAGATATTCTATGCATACCGTTATATGTAATGCATTTTGCATCTAGGCTATGGAGTGTTTTGTTCTTAAAAATATAGGGTGGCATATGTTAACAGGCGCTACTTTGTAAGTTGATAATTATGTTCTAAGAAAAAGCAATAATCTCTGATGTTTGTGAAAGAAACTTGTAAAGAAATAAAACCATTAAACTAATGGTTTAGATCAATTTACGTTTCTTTTTTACTAAGATGATTTTTTAAAAACTTTAATGGGGCTTTTGGTATTCAGTTGTGGTAGTTAGTGTGGTTTGTTCAAATGGTATTTACAGAATGTTAGATTTTTATTTATTTATTATCTAAAATCTAGCTATAAGATAATTAACTGTGTTTAGTTAAATTAAGTTAAATTTTCTTACAATAATTTCTTTGATAAATCAATATTCAGAAGTAATAAACGCAGCCTAAGACACTGAACTACGTTTTTCTCTTCTCCACAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAGTTAAGTGAATAGCTCAACTATCTGGTTGATTTAATGTCAAACTGTTGTCCTTGTTCCTCCTCCTTACAAATTATAACTGCTGTAATATGTTTACAGATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATACACACACACAGATATATATATTCTCCCCAGATACCTGTTTGTACTTTCTGTTGGTTTATTGGTTTCCTTATGAATTTGTTTTTTGTCCCTTTTGGCCTGAATGTTTATGTGCAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGAGTTATCTTTGGCAACTTTTCCACTTTGTTTCCGTCCTGTTTTGCTTGTAAAGCTAAACTCTTTTTTAATGTCTATTGTATATTGAAATTTTCAAAGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACCACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAGGCTTCACTGTGATGAAGCATTTGACACATCACTAACTTTAGATTAAAGTGATTTG

mRNA sequence

ATGAAATCCCAGCGATGGTGCTTGAAAGACGATCCCGCAATGGCGCTAGGGTGGACAGCAGACACGGACCTCATTATCAGTGCTAGGGTTGAAGGATTAGCAGCGGTGGCGATGAGTTGACGAGATCTATTGGAGGGCTTCACATCCTGGGGGCTGAGTAAGCAATTGCAGGACCTTCCTTTTCTCCTACGGAGGCTGCTTCGGGAACTCCTTAATCCACAGAGATCTCTTCCTCTTGTCATTAGAACACGTGTTTACATTGCAATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGAGTTATCTTTGGCAACTTTTCCACTTTGTTTCCGTCCTGTTTTGCTTGTAAAGCTAAACTCTTTTTTAATGTCTATTGTATATTGAAATTTTCAAAGGTGTTGCTTCATTTTGTGTTCGGGAATGTGAAGCTTGAGAACCACAAAAACTGTGTTTGGAAAATAGCCACTGCAGATGTCTGCTCGCGTTTATCACCTGAGTTTACACACGTAGTTTAGGCTTCACTGTGATGAAGCATTTGACACATCACTAACTTTAGATTAAAGTGATTTG

Coding sequence (CDS)

ATGGTACTGAGTGTAGTCTACGCTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGATTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATATATCGATCGGTACTCTATAATCGCCATGGAGAAACTTGA

Protein sequence

MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGET

Homology

[Close]

BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-08
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 4   SVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNR 51
           +++Y VSP+DIIPEAL G+ G +DD+F+L +  +YI+ +YR V+  R
Sbjct: 208 ALLYLVSPLDIIPEALFGILGFLDDLFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.4e-08
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1


Query: 4   SVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNR 51
           ++ Y VSP+D +PE +LGL G +DD F++L+ F+YI+ +YR V+  R
Sbjct: 217 ALAYLVSPLDFLPEGVLGLLGFLDDFFVILLLFIYISIMYREVVTQR 263

[Close]

BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-07
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 4   SVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNR 51
           ++ Y VSP+DIIPEA+ GL G +DD F+L +  +YI+ +YR V+  R
Sbjct: 208 ALFYLVSPLDIIPEAVFGLLGFLDDFFVLFLLLIYISIMYREVVTQR 254

[Close]

BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 1


Query: 7   YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNR 51
           Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+  R
Sbjct: 213 YLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 256

[Close]

BLAST of ClCG08G002480 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 1


Query: 7   YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNR 51
           Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+  R
Sbjct: 212 YLISPLDFVPEALFGILGFLDDFFVIFLLLIYISIMYREVITQR 255

[Close]

BLAST of ClCG08G002480 vs. TrEMBL
Match: U5FS44_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11010g PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.3e-14
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
          MVLS VY +SP+DIIPE +LG+ GL+DD+ I+LICFL++AAIYRSVLY RHG
Sbjct: 34 MVLSAVYIISPVDIIPEGILGIVGLLDDLLIVLICFLHVAAIYRSVLYYRHG 85

[Close]

BLAST of ClCG08G002480 vs. TrEMBL
Match: V4T8S4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002598mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M+ S VY  SPIDIIPEALLG+ GL+DD+ I L+CFL++AA+YR+VLYNRHG
Sbjct: 134 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHG 185

[Close]

BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A067GW82_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M+ S VY  SPIDIIPEALLG+ GL+DD+ I L+CFL++AA+YR+VLYNRHG
Sbjct: 100 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHG 151

[Close]

BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A067H8R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-13
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M+ S VY  SPIDIIPEALLG+ GL+DD+ I L+CFL++AA+YR+VLYNRHG
Sbjct: 134 MIFSAVYIFSPIDIIPEALLGIVGLLDDLLIALLCFLHVAALYRAVLYNRHG 185

[Close]

BLAST of ClCG08G002480 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-13
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M LS +Y  SPIDIIPEA+LG+ GL+DD+ I+L+CFL++AAIYRSVLY RHG
Sbjct: 132 MFLSTIYIFSPIDIIPEAILGIVGLLDDLLIVLVCFLHVAAIYRSVLYYRHG 183

[Close]

BLAST of ClCG08G002480 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-16
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           ++LS +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVLY+RHG
Sbjct: 150 LILSAIYIISPIDIIPEGVLGVIGLLDDLLIALICFLHVAALYRSVLYSRHG 201

[Close]

BLAST of ClCG08G002480 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRH 52
           M+LS VY +SPIDIIPE +LG+ GL+DD+ I LICFL++AA+YRSVLY RH
Sbjct: 132 MILSAVYIISPIDIIPEGVLGVVGLLDDLLIALICFLHVAALYRSVLYFRH 182

[Close]

BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-19
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGET 55
           MVLSVVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVLYNRHG T
Sbjct: 132 MVLSVVYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]

BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 9.3e-19
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHGET 55
           MVLSV+Y VSPIDIIPEALLGLFGLMDDI ILLICFLYIAA+YRSVLYNRHG T
Sbjct: 132 MVLSVIYTVSPIDIIPEALLGLFGLMDDILILLICFLYIAAMYRSVLYNRHGGT 185

[Close]

BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|1012179668|ref|XP_015967830.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis duranensis])

HSP 1 Score: 84.3 bits (207), Expect = 6.9e-14
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M+LSVVY +SPIDIIPE +LG+ GL+DD+ I+LICFL++AA+YRSVLY RHG
Sbjct: 134 MILSVVYIISPIDIIPEGILGIVGLLDDLLIVLICFLHVAALYRSVLYLRHG 185

[Close]

BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|1021522408|ref|XP_016204594.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 6.9e-14
Identity = 37/52 (71.15%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
           M+LSVVY +SPIDIIPE +LG+ GL+DD+ I+LICFL++AA+YRSVLY RHG
Sbjct: 134 MILSVVYIISPIDIIPEGILGIVGLLDDLLIVLICFLHVAALYRSVLYLRHG 185

[Close]

BLAST of ClCG08G002480 vs. NCBI nr
Match: gi|566200595|ref|XP_006376216.1| (hypothetical protein POPTR_0013s11010g [Populus trichocarpa])

HSP 1 Score: 84.0 bits (206), Expect = 9.0e-14
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MVLSVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIAAIYRSVLYNRHG 53
          MVLS VY +SP+DIIPE +LG+ GL+DD+ I+LICFL++AAIYRSVLY RHG
Sbjct: 34 MVLSAVYIISPVDIIPEGILGIVGLLDDLLIVLICFLHVAAIYRSVLYYRHG 85

The following BLAST results are available for this feature:

BLAST of ClCG08G002480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN170_XENLA	4.3e-08	48.94	E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1	[more]
RN170_DANRE	7.4e-08	46.81	E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1	[more]
RN170_XENTR	1.7e-07	48.94	E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1	[more]
RN170_BOVIN	1.1e-06	43.18	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2	[more]
RN170_HUMAN	1.1e-06	43.18	E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2	[more]

BLAST of ClCG08G002480 vs. TrEMBL


Match Name	E-value	Identity	Description
U5FS44_POPTR	6.3e-14	71.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11010g PE=4 SV=1	[more]
V4T8S4_9ROSI	1.4e-13	69.23	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002598mg PE=4 SV=1	[more]
A0A067GW82_CITSI	1.4e-13	69.23	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1	[more]
A0A067H8R0_CITSI	1.4e-13	69.23	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029826mg PE=4 SV=1	[more]
A0A061FKC6_THECC	3.1e-13	69.23	RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is...	[more]

BLAST of ClCG08G002480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22510.2	1.6e-16	65.38	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT1G72175.1	1.0e-15	68.63	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

BLAST of ClCG08G002480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126217\|ref\|XP_008463070.1\|	7.1e-19	92.59	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
gi\|449441207\|ref\|XP_004138374.1\|	9.3e-19	90.74	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]	[more]
gi\|1012179668\|ref\|XP_015967830.1\|	6.9e-14	71.15	PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis duranensis]	[more]
gi\|1021522408\|ref\|XP_016204594.1\|	6.9e-14	71.15	PREDICTED: E3 ubiquitin-protein ligase RNF170 [Arachis ipaensis]	[more]
gi\|566200595\|ref\|XP_006376216.1\|	9.0e-14	71.15	hypothetical protein POPTR_0013s11010g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010652	DUF1232

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002480.1	ClCG08G002480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010652	Protein of unknown function DUF1232	PFAM	PF06803	DUF1232	coord: 1..33 score: 1.
None	No IPR available	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 1..54 score: 5.6
None	No IPR available	PANTHER	PTHR22894:SF5	PROTEIN Y38F1A.2	coord: 1..54 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G002480	MELO3C025008	Melon (DHL92) v3.5.1	mewcgB297
ClCG08G002480	Cla001011	Watermelon (97103) v1	wcgwmB410
ClCG08G002480	Cla97C08G146470	Watermelon (97103) v2	wcgwmbB336
ClCG08G002480	Bhi04G001765	Wax gourd	wcgwgoB633
ClCG08G002480	CSPI06G02530	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002480	CmaCh01G009330	Cucurbita maxima (Rimu)	cmawcgB437
ClCG08G002480	CmoCh01G009520	Cucurbita moschata (Rifu)	cmowcgB429
ClCG08G002480	Lsi08G002360	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002480	Cp4.1LG02g09420	Cucurbita pepo (Zucchini)	cpewcgB532
ClCG08G002480	CsGy6G002590	Cucumber (Gy14) v2	cgybwcgB457
ClCG08G002480	CsaV3_6G002730	Cucumber (Chinese Long) v3	cucwcgB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002480	Cucurbita moschata (Rifu)	cmowcgB024
ClCG08G002480	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002480	Cucurbita pepo (Zucchini)	cpewcgB709
ClCG08G002480	Melon (DHL92) v3.6.1	medwcgB297
ClCG08G002480	Silver-seed gourd	carwcgB0653
ClCG08G002480	Cucumber (Gy14) v1	cgywcgB627
ClCG08G002480	Cucurbita maxima (Rimu)	cmawcgB031