Cucsa.365920.3 (mRNA) Cucumber (Gy14) v1

Overview
NameCucsa.365920.3
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRING finger protein
Locationscaffold03611 : 3797144 .. 3802926 (+)
Sequence length1008
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGTTGATTCTCTTTCTTCAATTCATTTTCTCTTTTGATGCTGCCTTTTTTTTTtCTTTTTAAATTTTTATAATTTAATCTCTCTTTGAATGATTCTGTTCCTCCATTTCATTTTCGTATTTCATTTCTTTGCAACTGTCGACTAGGTTTGTTTCTTGGAATTTGGAATCTGGTTGCTGTTTTTtCCTTTGTCCTGATTAGTCACATTAATCACGGCTTAGTTATCCGATATCGTGAATTGTAGTCTCTTCGAGCTATTTTTTACCGATGGACAAGTCTTGGATGAAATTTCTGTTTCTTGGTAACGTGTTCTCGAACCTCTGCATCTCAACAAATGGTCAAATGAAACTAAAATCTGAAACAGAGGCTGAGATTGAATTGCATCTCTTTGAGATTATTTGCTTCCAGCTGGAAATAACTGCCTAAATGATTGAGGGTGGTCACTGGAGTTAATCCTGTACAATTAAGAGAGAGTTCATCTAGTTTTTGGATCAGAGAAGGAACTTCGTGGTTTCATTTTCAACTTTAGGAACTTGTTGTATAAGAAATGCATTAAATCATGAGATGTGCATGAACATTTTTAATGTTGGAAGACAAAGTTCTGCTTGCTAGTTGTATTAATATCCCTTTTATGAGATTTGTTTGTAAAATATTTAAACAAAAGAAAAaGAAATGTTCATCTATGAAGCTCACTGCATTGTCTGCTTCCCTATATGTAGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGGTATTTCTCTTTTTTACATAATTTCTCTGATGAACTGCTAGTTAAAAGTGATTGTTGAATATTCTTTGGAACATGAAAAAGGATTTTCCATGAAGAATTGACCATAGAGAGTGAGCATTGATTTGCTAGGGCAGGAAGAAGGCAGGAAGCATTATTCCATGTCCAGTGAGAACAATTAGGACCAAGAAACTGAAGTTAATGGCCTAAATATGTCTCCTCGTATGAGAAGATAATGATAGTTTCATCAACAAACTGAACGTAGGAATTAGGAAATGGACATTGGACATAGCATGCCGATCATTCCCCAATTCAAAGCCTTTAGTCTAAGTTCTGTTTTCAGCAAGATTCAACGTTCTACTAAGGCAATTCAACACAAGAATAGTGAATAAAAAGGAAGGGGATAATGGGGCACCATGCCCAAGCTAACACTCTTCTCCACAAAGGCTACTACCTGAATTCCTCCTAACACACCATCATTCCCTGCCACATGTACTCTCAAATCATGTCCCACTTCTCTAACTAACCATCAGGTGTACCAGTTCCCTTTCTGCCCTTCCTACTATAAGTTTTTGTCACTTGGGGCTTCACATTTTTCCTTTGATGATAATGGATAAATTAGCTGAAGAGAGACAGCCTATAATTTACTAGAATATTGTTGACAATGTTCTAATCAGCTTTATTACAATCCTTCTTTTTTTTTGTGCTTCCACTCATCAATTAATTCATATGCAATAAGAGATGCATTGATTTGATGACCGATTGCAAAAATGGATTGATTttCTGTGATGGTGGATGGAAGAACTTGTTTAGTCTCTCTGATAAATCTCTAGGAATGATCTTATAGAGAAAAGTGGTGAGGCGAATGGCCTAAACCTACTGATTTGGCATCAGTCTTTTTGGGGATGAGGCAGAGGCAAGTTTTGTTGAGGCTAGCATTGGTAATATCATTCTCAGAAAAATCATTGAACACCCTCTTGATGCCATCCTTGAAAGTGTTCCAGGAGATTTTTTATTGAACAAATCGTAAAATGAATTTTCTAGTCTGAGAAAGGGAGTTCTAGCATCGTGCTTGTAATGAGGCAGCAATTAATGGAATGTGGCAGAAATCTGTTACCAACTTTTTGAGAACAAAGTTGGTAGTAAAAATCAACAAAAGACTTTTACAAACTCAGCTTCTATGTCACTGACAGCAAGGACACTAACCGTTCTGTGAGGGCATGTTTGGCTCAAGGAGTTTGAAAGTAGGAGTTGAGAAGTAGGGATTTTTGAACACCACTCCTTGTTTGGTCCCAGGAGTTTGTGAGTCTCACCACTAAAAGACATCAATTTTATACATTATCAACTCCTTACATAGTGCGCTCTAGGAGTTCACAACTCCGTAAACTTCATAACTCTTTACTTCTCAATATTCAACTCTTTACCTGAAACACCCCCTAGAGGATTTCAACGGTTGTGTTCTTTCTATATTTTGCAACAATAAGACAATGGAAGAATGAAATTTCATCACCATCAGCTTGCCAATTGGATTTACAGTGCTGTCTCTGCATAATCTCTTCATTTGCAGCAATGGGGAAATTGTCAGATCTAGTAGCTATGCGCCTGTGGATGGAATAATATCTAAAGGCCCATTTTCCTCATTTGGGTCAATGACTTATTATGCACTATCTGAAGCTGACTTTTGTAGTTAGAGTCAGTGGATGAATTCCAGTCCGTGAGAGATAATTTCAGGCATTTCAATCTCTGCATAAAACCACGACCCATCCAACCCACCATGCTGTTTTTGGTTCACCAATGAAACATCAGAACAGAATCATGATATGTTTCAGCCACGTATTAGCAAATTTGAATGAAGTAGGACCCCCTTTCTCTTCTCCAGCCTATGGGTAAATGGGAAAACTTTTTTAGGCAATTTGTTCCAGCCTTTAACCGATAGAAAGTCAAATTTAGATAAGATTCCATCCAAAATGAGAAATTTATCAATAAAGGTGTCGGAACCAAATTCTCTGCTACTGTACCATGTGAGAGGACTGTTTTGCAGTGGCAGTAAAGTGATTAATAGGATACTGATAGAACACCACTTCCTAACAAGAACCGAAATTTGAAATATATTGAGAATTAATGAAGAACTACAATATGATCCAAGTTTATGGTACTTGGGACCCCCTCTCTTGAGAATACTACTCAACCACCTCCCCcTTCTTCACTCACCCACTTCTTATTTGTAACCACTGCTATTAGTAACTGCCTAAATATCTAATTACCCTTATACCCCTAACCCATACTAATCTAGGTATCTAACAAATACATGGCTCTACAAATCCACTCCCCTTTACTATCAACATTAAAGTCTTCACTGAGGATCTAGTTATTGCCACAGGTACGATAAAACATAAAGCTCTTGCCAATAAGAAACATGGTTAGATGATGAAGATGGGCCATAAATACCCGATGACCAAAAGCTAAAATCATCAGCCAGATTGATGCGTAGGGAAAGGGTTTATGCACCTTCAATAGCATCCAAAACACCCAAAGATGGATCATTCCAAAGGATGAGAATACCACCAAAGAGCTTACAACATTTAGTGGAAGACCAACCACATCCTTAGAATTCCAAAGTGACTTAATGAATCTCTTATTGATAGAGGATTATTTAGTTTCCTGTAAAATCAAATCACAAAAACACAAATTCCCTTCTAGCCTGGATCTGATTTTTTAGAACCTTAAGGGGCCGTTTCTTTTGTGGGTAAAGAAGGTGGGAATAGGTATGGGCTTACAAAGGTTGATGGATATATTTTTTTtACCTTGGAAAAGATATTTCCCAGGGTTTATTATTCAACACAAGTGGAGGATTTCCAATGCCCTTGAGAAGGGAAGGTTTGCAATTCCTTCCCTCAAACTCAGGGTGATATCGGGGCAACTTTGCCCTAAGTTTCAAAATCTAAATCATTTTGTTTTTCAACTTGTGGCATCTCGGAGGAACTTTTGTCCAAAGTTTTAAAATCTAAATCCTTCTATTTTCATTATGGGGCATCTCGAGGCAACTTTGCCCTAGGTTTTAGAACATTTTCCTTTTGTTATTTCATTTCGGGACATTTCAGGGAAACTTTGCCCCGAGTTTTAAAATCTAAATCCTTCTGTTTTTCATCTCGAGGCATCTCATAGGAAATTTGGCTCGAGTTTGTCCCTTGACTATTTATTTTTTATTATTTATTTATTCCCATACATTCTTAATACCATTTCCATGCACAACCAAACACAAACATCTTTAATTCCCAGCAATCTAATTCTCAGACTTGTTATTCTCAGGCATCATTAATTCTCTGTAATGTTATTCCCATTTCAATTCCATCAATCCAAACAGCCCCTAATGGGGCTTTTGGTAATCTGTTGCGGTAGTTAGTATGTATGAATGGTTTGTTGAAACGATATTTACATAACAGAATCTTATTAGTTTAGATTATTAATTTATTTATTATCTAAAATCTAACTACAAGATGTTTACATTTTTTTTTTttATATTCGTGAGTGTTCCGACCAGTTTACGTGCACCTCGACTAATCTCACGGGAACAATATGTTTACAAGTTATAGCAAAAAGTTTACATTCCTTATAGTCCATATAGATATTGAGAGAGTCAATAATAGAAACTAATACAAGTCTATCATTGATAGACTAATGTCTATCAGCTATAGAAATTAATAGAGGCTGTATCATTTATACTATATAAGTGATAGAAAGTGATACAAGCCTATCATTACTAGAGGTTGATAGAAGTCTATCAGTGTCTATCAATGCTCTTTTTGCTACTTCTATAAATAGTTTGACATTTTTTCTATTTGTGAAAATTTATCATAAATTTAGTTACAATGGTTTTTATTTAATAAATCAATATTCAGAATTAATTAATGCAGCCTAAGATACTGAACTGCGTTTtTTtCTTCTGTACAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAGTTAAGTCAATGCCTCAACCCAACTTTCTCAACATCAATTACTACTTATTTAAGTTATTTTAAATTAAAGTTAACTCGTAAATATCCTCTGTTTTTATTGTTCTTTTATTTATCTGAATGAAAAAATTGCTTTCCCATAAGAAGTCTGAACAATCAAGAGAGACACATAACTGAATTCTGGTTGATTGAATGTCATTATATCTGCTTTAATTTGTAATTTGTAATTTGTTTACAGATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGGTAATATATATATATTTTTCACCCCAGATTACCTGTTTGTACTTTCTGTTGGTTTATTGGTTCCTTATGAATTTGTTTTTTtCTGTTTTGGCTTGACTGTTTATGTGCAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTtAATTTtACA

mRNA sequence

CAATAAATTACTTCATCGGTAAGATCAACAAATCAGCACCGTGAAGGCATTCCAAGAAACGCGCCTCAGGTTTGAACTTCGAAGTCACAATCATACTCTTTCTACATCAAATTTTGATTAACACTTTGGCAATTTAGAAGGTTTTGATTCATAATATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAGTTAAGTCAATGCCTCAACCCAACTTTCTCAACATCAATTACTACTTATTTAAGTTATTTTAAATTAAAGTTAACTCGTAAATATCCTCTGTTTTTATTGTTCTTTTATTTATCTGAATGAAAAAATTGCTTTCCCATAAGAAGTCTGAACAATCAAGAGAGACACATAACTGAATTCTGGTTGATTGAATGTCATTATATCTGCTTTAATTTGTAATTTGTAATTTGTTTACAGATGGTACTAAGTGTAATCTACACTGTGAGTCCCATCGATATCATACCAGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCCTTATACTGCTCATCTGCTTCCTTTACATTGCTGCTATGTACCGATCTGTACTCTATAATCGTCATGGAGGAACTTGAACTTCTTTCACAGCTTTTCCAAGACCTGTTAGAAATCAGAGTAGCCATTTTAATTTTACA

Coding sequence (CDS)

ATGGACGGCCCTCCTGTGGGCGATATCTGTTCAATCTGCCATGGAAGATTCAACATCCCTTGTCAAGCAAATTGTTCGCACTGGTTCTGCGGCAAGTGTATAATGCTTGTCTGGGATCATGGATCACCACTACACCCATGCAAATGCCCCTTATGTCGTCGTTCAATCACTTTATTAGTTCCTTCGGAGGTTTCACCAATTCAACAAAGTGACCCAGAGGTTGCACGGGTTCTTAACAATATTAGGACTTATAACCGTCATTTCGGTGGCAACTCAACTGATTTAAGTCAGCGACTGCAGGACCTTCCTTTTCTCCTGCGGAGGTTGCTTCGAGAACTCCACAATCCACAGAGATCTCTTCCTCTTGTCATTCGAACACGTGTTTACATTGCAGTTAAGTCAATGCCTCAACCCAACTTTCTCAACATCAATTACTACTTATTTAAGTTATTTTAA

Protein sequence

MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAVKSMPQPNFLNINYYLFKLF*
Homology
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BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match: RN170_DANRE (E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.2e-17
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = 1 

Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVP----SEVS 69
           C +C  +  +P + NC H FCG CI+  W +G+ L    CP+CR+ +TLL P    SE S
Sbjct: 88  CPVCLQQAVLPVETNCGHLFCGSCIIAYWRYGTWLGAISCPICRQMVTLLFPLFQDSEQS 147

Query: 70  PIQQSDP-EVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVI 129
            +    P E   +L +I  YNR F G    L  RL+D+P LLR   RE+ +    L  + 
Sbjct: 148 AVAADSPVEPTLILTDISDYNRRFSGQPRSLLDRLRDVPTLLRHAFREMFS-VGGLFWMF 207

Query: 130 RTRVYIAV 133
           R R+ + V
Sbjct: 208 RVRILLCV 214

[Close]
BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-17
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1 

Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + ++P + NC H FCG CI+  W +GS L    CP+CR+++TLL+P  V     
Sbjct: 88  CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLP--VFGEND 147

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLREL 114
              +V  +  +I  YNR F G    + +R+ DLP LLR   RE+
Sbjct: 148 QSQDVVSLHQDISDYNRRFSGQPRSIMERIMDLPTLLRHAFREM 189

[Close]
BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match: RN170_HUMAN (E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 8.4e-17
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+++TLL+       Q 
Sbjct: 87  CPICLHQASFPVETNCGHLFCGACIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 146

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLREL 114
            D  V R+  +I  YNR F G    + +R+ DLP LLR   RE+
Sbjct: 147 QD--VLRLHQDINDYNRRFSGQPRSIMERIMDLPTLLRHAFREM 188

[Close]
BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match: RN170_MOUSE (E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.4e-17
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1 

Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS L    CP+CR+++TLL+       Q 
Sbjct: 115 CPICLHQASFPVETNCGHLFCGSCIIAYWRYGSWLGAISCPICRQTVTLLLTVFGEDDQS 174

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLREL 114
            D  V R+  ++  YNR F G    + +R+ DLP LLR   RE+
Sbjct: 175 QD--VIRLRQDVNDYNRRFSGQPRSIMERIMDLPTLLRHAFREV 216

[Close]
BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-16
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 1 

Query: 10  CSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQ 69
           C +C  +   P + NC H FCG CI+  W +GS L    CP+CR+++TL+ P      +Q
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPL-FQATEQ 146

Query: 70  SDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLREL 114
            D +   +L     YNR F G    L  R+ DLP LLR   RE+
Sbjct: 147 EDSQ--NILREAIGYNRRFSGQPRSLMDRIMDLPTLLRHAFREM 187

[Close]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match: B9IQE5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.8e-53
Identity = 100/132 (75.76%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPV D CSICHG FNI CQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++SDP+VA VL  I  YN  FGGN++ L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIR RVYIAV
Sbjct: 121 PLVIRARVYIAV 132

[Close]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match: A0A067JVY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-53
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP  D CS+CHGRF +PCQANCSHWFCG CIMLVW HGS + PCKCPLCRR ITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE S  ++ +PEVA +L  + TYNR FGG +T L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           P VIR RVYIA+
Sbjct: 121 PFVIRARVYIAM 132

[Close]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match: A0A061FKC6_THECC (RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) isoform 1 OS=Theobroma cacao GN=TCM_036509 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.6e-52
Identity = 94/132 (71.21%), Postives = 107/132 (81.06%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPPV D CSICHG FN+PCQANCSHWFCG CIMLVW HGS LHPCKCPLCRR ITLLV
Sbjct: 1   MEGPPVNDCCSICHGSFNVPCQANCSHWFCGNCIMLVWHHGSSLHPCKCPLCRRHITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++ +  VA +L  +  YNR+FGG S  L QRLQDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERHNSAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREMTDPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           PLVI+ RVY+A+
Sbjct: 121 PLVIKARVYLAM 132

[Close]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match: A0A0B0PUN2_GOSAR (RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.2e-51
Identity = 92/132 (69.70%), Postives = 105/132 (79.55%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPP  D CSICHG FN+PCQANCSHWFCG CIMLVW HGSP   CKCPLCRR ITLLV
Sbjct: 1   MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++ +P VA VL  +  YNR+FGG S  L QRLQDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PGEASLRERHNPAVAEVLEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREITDPQRTL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIR R+Y+A+
Sbjct: 121 PLVIRARIYLAM 132

[Close]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match: A0A0D2S8R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.1e-51
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+GPP  D CSICHG FN+PCQANCSHWFCG CIMLVW HGSP   CKCPLCRR ITLLV
Sbjct: 1   MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++ +P VA +L  +  YNR+FGG S  L QRLQDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PGEASLRERHNPAVAEILEKVEKYNRYFGGQSNGLIQRLQDLPFLLRRLLREITDPQRTL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIR R+Y+A+
Sbjct: 121 PLVIRARIYLAM 132

[Close]
BLAST of Cucsa.365920.3 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 91/132 (68.94%), Postives = 104/132 (78.79%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS L PCKCPLCRR I+LLV
Sbjct: 1   MNSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE +   ++D  V  VL N+ TYNR FGG S+ L QR+QDLPFLLRRLLRE+ +PQR+L
Sbjct: 61  PSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQRMQDLPFLLRRLLREMMDPQRTL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIR RVYIA+
Sbjct: 121 PLVIRARVYIAM 132

[Close]
BLAST of Cucsa.365920.3 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 144.8 bits (364), Expect = 4.3e-35
Identity = 69/102 (67.65%), Postives = 83/102 (81.37%), Query Frame = 1 

Query: 31  GKCIMLVWDHGSPLHPCKCPLCRRSITLLVPSEVSPIQQSDPEVARVLNNIRTYNRHFGG 90
           G CIMLVW HGS L PCKCPLCRR I+LLVPSE +   ++D  V+ VL+++ TYNR FGG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG 108

Query: 91  NSTDLSQRLQDLPFLLRRLLRELHNPQRSLPLVIRTRVYIAV 133
            S+ L QR+QDLPFLLRRLLRE+ +PQR+LPLVIR RVYIA+
Sbjct: 109 QSSGLIQRMQDLPFLLRRLLREMMDPQRTLPLVIRARVYIAL 150

[Close]
BLAST of Cucsa.365920.3 vs. TAIR10
Match: AT4G33940.1 (AT4G33940.1 RING/U-box superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 4.3e-27
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 1 

Query: 2   DGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLVP 61
           + PP  D+C IC G F +PC+ NC HW+CG CI+  W++ +   PCKCP+C R IT L P
Sbjct: 66  ESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSP 125

Query: 62  SEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLL 111
            E S  ++ + EV  VL+ +R YNR F G  T   Q++ +LPFL++R++
Sbjct: 126 -EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQKVHELPFLVKRMV 173

[Close]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.5e-74
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV
Sbjct: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIRTRVYIA+
Sbjct: 121 PLVIRTRVYIAM 132

[Close]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-70
Identity = 127/132 (96.21%), Postives = 129/132 (97.73%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP GDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPL PCKCPLCRRSITLLV
Sbjct: 1   MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLL+EL NPQRSL
Sbjct: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLQELLNPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIRTRVYIA+
Sbjct: 121 PLVIRTRVYIAM 132

[Close]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match: gi|224146326|ref|XP_002325966.1| (zinc finger family protein [Populus trichocarpa])

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-53
Identity = 100/132 (75.76%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPPV D CSICHG FNI CQANCSHWFCG CIMLVW HGS L PCKCPLCRR ITLLV
Sbjct: 1   MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P E S  ++SDP+VA VL  I  YN  FGGN++ L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQRMQDLPFLLRRLLREIMDPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           PLVIR RVYIAV
Sbjct: 121 PLVIRARVYIAV 132

[Close]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match: gi|802716459|ref|XP_012085009.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas])

HSP 1 Score: 215.3 bits (547), Expect = 7.3e-53
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP  D CS+CHGRF +PCQANCSHWFCG CIMLVW HGS + PCKCPLCRR ITLLV
Sbjct: 1   MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           PSE S  ++ +PEVA +L  + TYNR FGG +T L QR+QDLPFLLRRLLRE+ +PQRSL
Sbjct: 61  PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQRMQDLPFLLRRLLREMMDPQRSL 120

Query: 121 PLVIRTRVYIAV 133
           P VIR RVYIA+
Sbjct: 121 PFVIRARVYIAM 132

[Close]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match: gi|470127714|ref|XP_004299808.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 212.2 bits (539), Expect = 6.2e-52
Identity = 96/131 (73.28%), Postives = 107/131 (81.68%), Query Frame = 1 

Query: 1   MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60
           MDGPP  D CS+CH  FN PCQANCSHWFCGKCIMLVWDHGS L PCKCPLCRR ITLLV
Sbjct: 1   MDGPPENDQCSVCHSGFNTPCQANCSHWFCGKCIMLVWDHGSALQPCKCPLCRRQITLLV 60

Query: 61  PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQRLQDLPFLLRRLLRELHNPQRSL 120
           P+E S  Q++ PEVA +L  + TYNR+FGG S  L QR+QDLPFLLRRLLRE+ +P+RSL
Sbjct: 61  PTEASLSQRNTPEVAEILGKVETYNRYFGGQSRGLIQRMQDLPFLLRRLLREVLDPRRSL 120

Query: 121 PLVIRTRVYIA 132
           PLVIR RV IA
Sbjct: 121 PLVIRARVIIA 131

The following BLAST results are available for this feature:
BLAST of Cucsa.365920.3 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN170_DANRE2.2e-1737.50E3 ubiquitin-protein ligase RNF170 OS=Danio rerio GN=rnf170 PE=2 SV=1[more]
RN170_BOVIN3.8e-1739.42E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2[more]
RN170_HUMAN8.4e-1740.38E3 ubiquitin-protein ligase RNF170 OS=Homo sapiens GN=RNF170 PE=1 SV=2[more]
RN170_MOUSE8.4e-1739.42E3 ubiquitin-protein ligase RNF170 OS=Mus musculus GN=Rnf170 PE=1 SV=1[more]
RN170_XENTR7.2e-1638.46E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1[more]
BLAST of Cucsa.365920.3 vs. TrEMBL
Match NameE-valueIdentityDescription
B9IQE5_POPTR1.8e-5375.76Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1[more]
A0A067JVY1_JATCU5.1e-5371.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1[more]
A0A061FKC6_THECC5.6e-5271.21RING/U-box protein with domain of Uncharacterized protein function (DUF 1232) is... [more]
A0A0B0PUN2_GOSAR6.2e-5169.70RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1[more]
A0A0D2S8R7_GOSRA8.1e-5168.94Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1[more]
BLAST of Cucsa.365920.3 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G72175.11.1e-5168.94 RING/U-box protein with domain of unknown function (DUF 1232)[more]
AT1G22510.24.3e-3567.65 RING/U-box protein with domain of unknown function (DUF 1232)[more]
AT4G33940.14.3e-2744.95 RING/U-box superfamily protein[more]
BLAST of Cucsa.365920.3 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441207|ref|XP_004138374.1|7.5e-7499.24PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus][more]
gi|659126217|ref|XP_008463070.1|1.0e-7096.21PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo][more]
gi|224146326|ref|XP_002325966.1|2.5e-5375.76zinc finger family protein [Populus trichocarpa][more]
gi|802716459|ref|XP_012085009.1|7.3e-5371.97PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas][more]
gi|470127714|ref|XP_004299808.1|6.2e-5273.28PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsa.365920Cucsa.365920gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsa.365920.3Cucsa.365920.3-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.365920.3.five_prime_UTR.1Cucsa.365920.3.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.365920.3.CDS.1Cucsa.365920.3.CDS.1CDS
Cucsa.365920.3.CDS.2Cucsa.365920.3.CDS.2CDS
Cucsa.365920.3.CDS.3Cucsa.365920.3.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsa.365920.3.three_prime_UTR.1Cucsa.365920.3.three_prime_UTR.1three_prime_UTR
Cucsa.365920.3.three_prime_UTR.2Cucsa.365920.3.three_prime_UTR.2three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 10..52
score: 0.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 10..53
score: 10
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 8..82
score: 2.4
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 25..34
scor
NoneNo IPR availablePANTHERPTHR22894UNCHARACTERIZEDcoord: 1..132
score: 3.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 8..59
score: 6.8