ClCG08G002490 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G002490
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RING finger protein
Location	CG_Chr08 : 5282235 .. 5283629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAACGCGCCTGAGGTTTGAACTTCGAAGTGTGGGTTACATACTTTTTACCTATCAAATTTCGATAAACACTTTGACAAATTGGAAGATTTTGATCGACAATATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGTTGATTCTTTTGCTTCATTTCCTTTTCCCTTTTGATGCTTTGTTCTTAATTTCATCTCTCTTCAACGATTCTGTTCCTCTATTTCATATTCACATTTCATTTCTCTGCACAGTCCACTAGTTTTCTTCGTATTTGGAGTGTGGTTGCAGTTTTTCCCTTTGTCCTGGTAGTCACATTAACCGTGGCTTCTTCCTTAGTTATCCGAAATCGCGAATTCTATTCTCTTCGAGCTACTTAGTTTTTACCGATGGATAAGTCTGGGAGGAGAACTGCTGTTTATTGGTAACGTGTTTTAGAACTTCTGCACTTCCGCAAATGGCAAATGAAACCAAAATCTGAACAATGGAGTCAATCCCATAAAATTAAGAGAGAGTTCATCTAGTTTTCGGATTAGAAAGGAACTTCGTGGTCTCCATTTCGACTTTGGGAACTTGTTGTGTAAAAAGTGCATTAAATCATGAGATATGCATGAAAATTTTGAATGTTGGAAATAAAAAGTTTTGCTTCTATCCACCCCTATATTTTTGCATCATTAGGTGTCTTAATATCCCTTTTATGAGATTTGTTTGTAAAATACTTGAACAAAAGAAAAAGACATGTTCAACTCTACAAGTTTAGTTTCTTTTAGAAAATTGACCTGAAAAATGAATCTGAATTGAAGGTACTATGTCTTTTTGTTTGTCTTTTTGTCTTTTTTATTTTATTTATTAAATTTTCCTCCTGATGTCTTGATGTTGTAATTTTATGGTATATTGCCTAATTCTTCTTTAGAGAATTATCTTCCATTTACATCTACTGAGGGTAAGAGCCTATTTTTGAGGGTAAACTTAACTCTTCTGGGCTTTGTTTTCCTGGCATTCATCTTTTTGTACGGCCTTAGGCTGTGGTTTTCTTTTCTTGACTCAATATTATTGAACTGGATTGGTTAGTTAGTTGATTTTTTTCTCACTTCCTCGTCTTCTCTGAAGCTCACCGCATTTGCTGCTTTCCTGTATGCAGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAG

mRNA sequence

AAGAAACGCGCCTGAGGTTTGAACTTCGAAGTGTGGGTTACATACTTTTTACCTATCAAATTTCGATAAACACTTTGACAAATTGGAAGATTTTGATCGACAATATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAG

Coding sequence (CDS)

ATGGACGGCCCCCCTGCGGGCGATATCTGTTCCATCTGCCATGGAAGATTCAACACCCCTTGCCAAGCTAATTGCTCGCACTGGTTCTGCGGAAAGTGTATAATGCTTGTCTGGGATCATGGATCACCATTTCAGCCATGTAAATGCCCCTTATGCCGTCGACAAATCTCTTTATTAGTTCCTTCTGAGGTTTCACCAATTCAGCAAGGTGACCCAGAGGTTGCACGCGTTCTTAACAATATAAGGACTTATAACCGTCATTTTGGTGGCAACTCAACTGGTTTTAGTCAG

Protein sequence

MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ

Homology

[Close]

BLAST of ClCG08G002490 vs. Swiss-Prot
Match: RN170_BOVIN (E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-10
Identity = 30/81 (37.04%), Postives = 41/81 (50.62%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C IC  + + P + NC H FCG CI+  W +GS      CP+CR+ ++LL+P  V     
Sbjct: 88  CPICLHQASLPVETNCGHLFCGTCIVAYWRYGSWLGAISCPICRQTVTLLLP--VFGEND 147

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
              +V  +  +I  YNR F G
Sbjct: 148 QSQDVVSLHQDISDYNRRFSG 166

[Close]

BLAST of ClCG08G002490 vs. Swiss-Prot
Match: RN170_XENLA (E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-09
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C +C  +   P + NC H FCG CI+  W +G+      CP+CR+ ++LL P   +  Q+
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGTWLGAINCPICRQTVTLLFPLFGATDQE 146

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
              +   +L     YNR F G
Sbjct: 147 ---DAQNILQEATGYNRRFSG 164

[Close]

BLAST of ClCG08G002490 vs. Swiss-Prot
Match: RN170_XENTR (E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-09
Identity = 27/81 (33.33%), Postives = 40/81 (49.38%), Query Frame = 1


Query: 10  CSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQ 69
           C +C  +   P + NC H FCG CI+  W +GS      CP+CR+ ++L+ P   +  Q+
Sbjct: 87  CPVCLQQATFPVETNCGHLFCGSCIIAYWRYGSWLGAINCPICRQTVTLIFPLFQATEQE 146

Query: 70  GDPEVARVLNNIRTYNRHFGG 91
              +   +L     YNR F G
Sbjct: 147 ---DSQNILREAIGYNRRFSG 164

[Close]

BLAST of ClCG08G002490 vs. TrEMBL
Match: A0A067JVY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-37
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSE S  ++ +PEVA +L  + TYNR FGG +TG  Q
Sbjct: 61 PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. TrEMBL
Match: A0A0B0PUN2_GOSAR (RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-36
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSPFQ CKCPLCRRQI+LLV
Sbjct: 1  MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P E S  ++ +P VA VL  +  YNR+FGG S G  Q
Sbjct: 61 PGEASLRERHNPAVAEVLEKVEKYNRYFGGQSNGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. TrEMBL
Match: A0A0D2TVU3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-36
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSPFQ CKCPLCRRQI+LLV
Sbjct: 1  MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P E S  ++ +P VA +L  +  YNR+FGG S G  Q
Sbjct: 61 PGEASLRERHNPAVAEILEKVEKYNRYFGGQSNGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. TrEMBL
Match: A0A0D2S8R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.2e-36
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSPFQ CKCPLCRRQI+LLV
Sbjct: 1  MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P E S  ++ +P VA +L  +  YNR+FGG S G  Q
Sbjct: 61 PGEASLRERHNPAVAEILEKVEKYNRYFGGQSNGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. TrEMBL
Match: B9IQE5_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.8e-35
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP  D CSICHG FN  CQANCSHWFCG CIMLVW HGS  QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPVNDFCSICHGHFNIACQANCSHWFCGDCIMLVWHHGSVLQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P E S  ++ DP+VA VL  I  YN  FGGN++G  Q
Sbjct: 61 PGEASLRERSDPDVAEVLGKIERYNHLFGGNTSGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. TAIR10
Match: AT1G72175.1 (AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-35
Identity = 63/97 (64.95%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          M+ PP  D+CSICH  F  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRR ISLLV
Sbjct: 1  MNSPPENDLCSICHSHFTAPCQANCSHWFCGNCIMLVWRHGSTLQPCKCPLCRRHISLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSE +   + D  V  VL N+ TYNR FGG S+   Q
Sbjct: 61 PSEDTIRDRNDATVKEVLGNLETYNRLFGGRSSSLVQ 97

[Close]

BLAST of ClCG08G002490 vs. TAIR10
Match: AT4G33940.1 (AT4G33940.1 RING/U-box superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 8.3e-24
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 2   DGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLVP 61
           + PP  D+C IC G F  PC+ NC HW+CG CI+  W++ +  +PCKCP+C R I+ L P
Sbjct: 66  ESPPEDDVCPICFGSFTVPCRGNCGHWYCGNCILQYWNYAAISRPCKCPMCVRHITKLSP 125

Query: 62  SEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
            E S  ++ + EV  VL+ +R YNR F G  TGF Q
Sbjct: 126 -EPSLQERQEQEVKEVLDKVRRYNRLFVGGLTGFVQ 160

[Close]

BLAST of ClCG08G002490 vs. TAIR10
Match: AT1G22510.2 (AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232))

HSP 1 Score: 90.5 bits (223), Expect = 6.1e-19
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 31  GKCIMLVWDHGSPFQPCKCPLCRRQISLLVPSEVSPIQQGDPEVARVLNNIRTYNRHFGG 90
           G CIMLVW HGS  +PCKCPLCRR ISLLVPSE +   + D  V+ VL+++ TYNR FGG
Sbjct: 49  GNCIMLVWRHGSTLRPCKCPLCRRPISLLVPSEETVRSRNDATVSEVLHDVETYNRVFGG 108

Query: 91  NSTGFSQ 98
            S+G  Q
Sbjct: 109 QSSGLIQ 115

[Close]

BLAST of ClCG08G002490 vs. NCBI nr
Match: gi|659126217|ref|XP_008463070.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-50
Identity = 90/97 (92.78%), Postives = 91/97 (93.81%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPAGDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP QPCKCPLCRR I+LLV
Sbjct: 1  MDGPPAGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLQPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of ClCG08G002490 vs. NCBI nr
Match: gi|449441207|ref|XP_004138374.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP GDICSICHGRFN PCQANCSHWFCGKCIMLVWDHGSP  PCKCPLCRR I+LLV
Sbjct: 1  MDGPPVGDICSICHGRFNIPCQANCSHWFCGKCIMLVWDHGSPLHPCKCPLCRRSITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSEVSPIQQ DPEVARVLNNIRTYNRHFGGNST  SQ
Sbjct: 61 PSEVSPIQQSDPEVARVLNNIRTYNRHFGGNSTDLSQ 97

[Close]

BLAST of ClCG08G002490 vs. NCBI nr
Match: gi|470127714|ref|XP_004299808.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 166.0 bits (419), Expect = 3.3e-38
Identity = 70/97 (72.16%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPP  D CS+CH  FNTPCQANCSHWFCGKCIMLVWDHGS  QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPENDQCSVCHSGFNTPCQANCSHWFCGKCIMLVWDHGSALQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P+E S  Q+  PEVA +L  + TYNR+FGG S G  Q
Sbjct: 61 PTEASLSQRNTPEVAEILGKVETYNRYFGGQSRGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. NCBI nr
Match: gi|802716459|ref|XP_012085009.1| (PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas])

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-37
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          MDGPPA D CS+CHGRF  PCQANCSHWFCG CIMLVW HGS  QPCKCPLCRRQI+LLV
Sbjct: 1  MDGPPANDWCSVCHGRFKVPCQANCSHWFCGDCIMLVWHHGSAIQPCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          PSE S  ++ +PEVA +L  + TYNR FGG +TG  Q
Sbjct: 61 PSEASQRERHNPEVAEILQKVETYNRLFGGQTTGLIQ 97

[Close]

BLAST of ClCG08G002490 vs. NCBI nr
Match: gi|728847673|gb|KHG27116.1| (RING finger protein [Gossypium arboreum])

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-36
Identity = 67/97 (69.07%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MDGPPAGDICSICHGRFNTPCQANCSHWFCGKCIMLVWDHGSPFQPCKCPLCRRQISLLV 60
          M+GPP  D CSICHG FN PCQANCSHWFCG CIMLVW HGSPFQ CKCPLCRRQI+LLV
Sbjct: 1  MEGPPPNDCCSICHGYFNVPCQANCSHWFCGNCIMLVWQHGSPFQTCKCPLCRRQITLLV 60

Query: 61 PSEVSPIQQGDPEVARVLNNIRTYNRHFGGNSTGFSQ 98
          P E S  ++ +P VA VL  +  YNR+FGG S G  Q
Sbjct: 61 PGEASLRERHNPAVAEVLEKVEKYNRYFGGQSNGLIQ 97

The following BLAST results are available for this feature:

BLAST of ClCG08G002490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN170_BOVIN	3.7e-10	37.04	E3 ubiquitin-protein ligase RNF170 OS=Bos taurus GN=RNF170 PE=3 SV=2	[more]
RN170_XENLA	3.2e-09	33.33	E3 ubiquitin-protein ligase RNF170 OS=Xenopus laevis GN=rnf170 PE=2 SV=1	[more]
RN170_XENTR	5.4e-09	33.33	E3 ubiquitin-protein ligase RNF170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1	[more]

BLAST of ClCG08G002490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JVY1_JATCU	1.5e-37	71.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1	[more]
A0A0B0PUN2_GOSAR	4.7e-36	69.07	RING finger protein OS=Gossypium arboreum GN=F383_10727 PE=4 SV=1	[more]
A0A0D2TVU3_GOSRA	6.2e-36	68.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1	[more]
A0A0D2S8R7_GOSRA	6.2e-36	68.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G265000 PE=4 SV=1	[more]
B9IQE5_POPTR	1.8e-35	69.07	Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s10760g PE=4 SV=1	[more]

BLAST of ClCG08G002490 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72175.1	1.6e-35	64.95	RING/U-box protein with domain of unknown function (DUF 1232)	[more]
AT4G33940.1	8.3e-24	46.88	RING/U-box superfamily protein	[more]
AT1G22510.2	6.1e-19	61.19	RING/U-box protein with domain of unknown function (DUF 1232)	[more]

BLAST of ClCG08G002490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126217\|ref\|XP_008463070.1\|	2.8e-50	92.78	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]	[more]
gi\|449441207\|ref\|XP_004138374.1\|	3.1e-49	90.72	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis sativus]	[more]
gi\|470127714\|ref\|XP_004299808.1\|	3.3e-38	72.16	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Fragaria vesca subsp. vesca]	[more]
gi\|802716459\|ref\|XP_012085009.1\|	2.1e-37	71.13	PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]	[more]
gi\|728847673\|gb\|KHG27116.1\|	6.8e-36	69.07	RING finger protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G002490.1	ClCG08G002490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 10..52 score: 0.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 10..53 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 7..68 score: 1.3
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 25..34 scor
None	No IPR available	PANTHER	PTHR22894	UNCHARACTERIZED	coord: 1..97 score: 2.3
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 8..57 score: 1.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 2..57 score: 4.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G002490	Cucsa.365920	Cucumber (Gy14) v1	cgywcgB627
ClCG08G002490	MELO3C025008.2	Melon (DHL92) v3.6.1	medwcgB297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G002490	Silver-seed gourd	carwcgB0653
ClCG08G002490	Cucumber (Chinese Long) v3	cucwcgB518
ClCG08G002490	Watermelon (97103) v2	wcgwmbB336
ClCG08G002490	Wax gourd	wcgwgoB633
ClCG08G002490	Cucurbita maxima (Rimu)	cmawcgB031
ClCG08G002490	Cucurbita maxima (Rimu)	cmawcgB437
ClCG08G002490	Cucurbita moschata (Rifu)	cmowcgB024
ClCG08G002490	Cucurbita moschata (Rifu)	cmowcgB429
ClCG08G002490	Wild cucumber (PI 183967)	cpiwcgB526
ClCG08G002490	Cucumber (Chinese Long) v2	cuwcgB500
ClCG08G002490	Melon (DHL92) v3.5.1	mewcgB297
ClCG08G002490	Watermelon (97103) v1	wcgwmB410
ClCG08G002490	Cucurbita pepo (Zucchini)	cpewcgB532
ClCG08G002490	Cucurbita pepo (Zucchini)	cpewcgB709
ClCG08G002490	Bottle gourd (USVL1VR-Ls)	lsiwcgB440
ClCG08G002490	Cucumber (Gy14) v2	cgybwcgB457