Cucsa.364970 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.364970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosomal L18p/L5e family protein
Location	scaffold03611 : 2450813 .. 2451193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

mRNA sequence

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

Coding sequence (CDS)

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACTGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCTAAACTCCACCGTTTTCCTCGATCAAACAATTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAGCTATCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTTGATTCTGTTCAGCGCTCCGGCGTCGCCGTTGATGGGGCTGAGAAGCTTGGAACAGGTTCGATCTAG

Protein sequence

MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKLGTGSI*

Homology

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BLAST of Cucsa.364970 vs. TrEMBL
Match: A0A0A0KE39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.0e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGSI 127
           LGTGSI
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Cucsa.364970 vs. TrEMBL
Match: B9T5C2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-44
Identity = 93/122 (76.23%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP TS+IIAMASS+EQEF+A YR++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           +K+ASRVGEKLG RLKEIGV+ + IDL EELSRPI+YRK VLPLFDSV+R GV V G +K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of Cucsa.364970 vs. TrEMBL
Match: A0A0J8CPM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-44
Identity = 88/118 (74.58%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL++SCRKITAQVTNPAT SIIAMASSSEQEFV +YR+ L+RFPRS+NFWD+++
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKL 122
           ASRVGEKLG RLKEIGVSDV I+++EELSRP ++R++V+PLFDSV+R+G++V GA+KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

[Close]

BLAST of Cucsa.364970 vs. TrEMBL
Match: F6HYR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-43
Identity = 87/121 (71.90%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M    +HLLRLVLSCRK+TAQVT+P T SI+AMASSSE EF+A YR+KLHRFPRS+NFWD
Sbjct: 1   MEGQHHHLLRLVLSCRKLTAQVTSPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           +K+ASR+GEKLG RL++IGVSDV ID+ EELSRPI++R+MV+PLF+SV+R G++V GAEK
Sbjct: 61  AKIASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEK 120

Query: 121 L 122
           L
Sbjct: 121 L 121

[Close]

BLAST of Cucsa.364970 vs. TrEMBL
Match: A0A103XYM3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022475 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.8e-42
Identity = 84/118 (71.19%), Postives = 103/118 (87.29%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL LSCRKITAQVT P T SI+AMASS+EQEF+A+YRSKL  FPRS+ FWD+K+
Sbjct: 5   NQGHLLRLALSCRKITAQVTTPGTDSIVAMASSTEQEFMAHYRSKLTTFPRSHKFWDAKI 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKL 122
           ASR+GEKLG RL +IG+S + IDL EELSRPI+YRKMV+P F+SV+R+G++V G+EKL
Sbjct: 65  ASRIGEKLGFRLNDIGISHLEIDLTEELSRPIHYRKMVVPFFNSVKRAGISVHGSEKL 122

[Close]

BLAST of Cucsa.364970 vs. TAIR10
Match: AT2G43310.1 (AT2G43310.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 168.3 bits (425), Expect = 3.0e-42
Identity = 84/123 (68.29%), Postives = 104/123 (84.55%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKLGT 123
           ASRVGEKLG RL+E+GV  V ID  EE+SRPI++RK VLPLFDSV+R+G+ VDG E+L  
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQLND 124

Query: 124 GSI 127
            S+
Sbjct: 125 ISV 127

[Close]

BLAST of Cucsa.364970 vs. NCBI nr
Match: gi|449446251|ref|XP_004140885.1| (PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.5e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGTGSI 127
           LGTGSI
Sbjct: 121 LGTGSI 126

[Close]

BLAST of Cucsa.364970 vs. NCBI nr
Match: gi|659089892|ref|XP_008445736.1| (PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGTGSI 127
           LG GSI
Sbjct: 121 LGKGSI 126

[Close]

BLAST of Cucsa.364970 vs. NCBI nr
Match: gi|255585499|ref|XP_002533441.1| (PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis])

HSP 1 Score: 186.0 bits (471), Expect = 4.0e-44
Identity = 93/122 (76.23%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP TS+IIAMASS+EQEF+A YR++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           +K+ASRVGEKLG RLKEIGV+ + IDL EELSRPI+YRK VLPLFDSV+R GV V G +K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of Cucsa.364970 vs. NCBI nr
Match: gi|731322931|ref|XP_010672162.1| (PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.3 bits (469), Expect = 6.8e-44
Identity = 88/118 (74.58%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL++SCRKITAQVTNPAT SIIAMASSSEQEFV +YR+ L+RFPRS+NFWD+++
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEKL 122
           ASRVGEKLG RLKEIGVSDV I+++EELSRP ++R++V+PLFDSV+R+G++V GA+KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

[Close]

BLAST of Cucsa.364970 vs. NCBI nr
Match: gi|225433866|ref|XP_002265052.1| (PREDICTED: uncharacterized protein LOC100264652 [Vitis vinifera])

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-43
Identity = 87/121 (71.90%), Postives = 108/121 (89.26%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M    +HLLRLVLSCRK+TAQVT+P T SI+AMASSSE EF+A YR+KLHRFPRS+NFWD
Sbjct: 1   MEGQHHHLLRLVLSCRKLTAQVTSPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWD 60

Query: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120
           +K+ASR+GEKLG RL++IGVSDV ID+ EELSRPI++R+MV+PLF+SV+R G++V GAEK
Sbjct: 61  AKIASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEK 120

Query: 121 L 122
           L
Sbjct: 121 L 121

The following BLAST results are available for this feature:

BLAST of Cucsa.364970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE39_CUCSA	1.0e-62	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1	[more]
B9T5C2_RICCO	2.8e-44	76.23	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1	[more]
A0A0J8CPM9_BETVU	4.7e-44	74.58	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 S...	[more]
F6HYR6_VITVI	3.1e-43	71.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=...	[more]
A0A103XYM3_CYNCS	9.8e-42	71.19	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022475 PE=4 ...	[more]

BLAST of Cucsa.364970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43310.1	3.0e-42	68.29	Ribosomal L18p/L5e family protein	[more]

BLAST of Cucsa.364970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446251\|ref\|XP_004140885.1\|	1.5e-62	100.00	PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
gi\|659089892\|ref\|XP_008445736.1\|	2.3e-60	96.83	PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]	[more]
gi\|255585499\|ref\|XP_002533441.1\|	4.0e-44	76.23	PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis]	[more]
gi\|731322931\|ref\|XP_010672162.1\|	6.8e-44	74.58	PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris]	[more]
gi\|225433866\|ref\|XP_002265052.1\|	4.4e-43	71.90	PREDICTED: uncharacterized protein LOC100264652 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.364970.1	Cucsa.364970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 5..113 score: 3.0
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..121 score: 8.7
None	No IPR available	PANTHER	PTHR12899:SF6	F14B2.25/F14B2.25	coord: 1..121 score: 8.7
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 5..89 score: 8.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.364970	Csa6G042360	Cucumber (Chinese Long) v2	cgycuB511
Cucsa.364970	MELO3C011656	Melon (DHL92) v3.5.1	cgymeB589
Cucsa.364970	CSPI06G03620	Wild cucumber (PI 183967)	cgycpiB540
Cucsa.364970	CmaCh17G006010	Cucurbita maxima (Rimu)	cgycmaB1000
Cucsa.364970	CmoCh17G005810	Cucurbita moschata (Rifu)	cgycmoB1001
Cucsa.364970	Lsi08G003710	Bottle gourd (USVL1VR-Ls)	cgylsiB590
Cucsa.364970	Cp4.1LG12g05020	Cucurbita pepo (Zucchini)	cgycpeB0949
Cucsa.364970	MELO3C011656.2	Melon (DHL92) v3.6.1	cgymedB588
Cucsa.364970	CsaV3_6G003910	Cucumber (Chinese Long) v3	cgycucB556
Cucsa.364970	Cla97C08G147690	Watermelon (97103) v2	cgywmbB632

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.364970	Watermelon (97103) v2	cgywmbB628
Cucsa.364970	Wax gourd	cgywgoB732
Cucsa.364970	Cucurbita maxima (Rimu)	cgycmaB1011
Cucsa.364970	Cucurbita moschata (Rifu)	cgycmoB1011
Cucsa.364970	Watermelon (Charleston Gray)	cgywcgB626
Cucsa.364970	Cucurbita pepo (Zucchini)	cgycpeB0957
Cucsa.364970	Silver-seed gourd	carcgyB0102