CmoCh17G005810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G005810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosomal L18p/L5e family protein
Location	Cmo_Chr17 : 6007931 .. 6008311 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCACCAATCCAGACACCTCCACTATCATCGCTATGGCATCTTCCTCCGAGCAGGAATTCGTCGCCTATAACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGTGTCTCCGATGTTCGGATTGATCTTGCCGAAGAACTTTCCCGCCCTGTGTCCTATCGAAATAGGGTTCTGCCGCTCTTCGATTCTGTTCGGCGCTCCGGCGTCGCCGTCAATGGTGCTGAGAAGCTCGGATCAGGTGCGATTTAG

mRNA sequence

ATGTCCATTAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCACCAATCCAGACACCTCCACTATCATCGCTATGGCATCTTCCTCCGAGCAGGAATTCGTCGCCTATAACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGTGTCTCCGATGTTCGGATTGATCTTGCCGAAGAACTTTCCCGCCCTGTGTCCTATCGAAATAGGGTTCTGCCGCTCTTCGATTCTGTTCGGCGCTCCGGCGTCGCCGTCAATGGTGCTGAGAAGCTCGGATCAGGTGCGATTTAG

Coding sequence (CDS)

ATGTCCATTAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCACCAATCCAGACACCTCCACTATCATCGCTATGGCATCTTCCTCCGAGCAGGAATTCGTCGCCTATAACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACCGTTTGAAGGAGATCGGTGTCTCCGATGTTCGGATTGATCTTGCCGAAGAACTTTCCCGCCCTGTGTCCTATCGAAATAGGGTTCTGCCGCTCTTCGATTCTGTTCGGCGCTCCGGCGTCGCCGTCAATGGTGCTGAGAAGCTCGGATCAGGTGCGATTTAG

Homology

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BLAST of CmoCh17G005810 vs. TrEMBL
Match: A0A0A0KE39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-55
Identity = 114/126 (90.48%), Postives = 121/126 (96.03%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGSGAI 127
           LG+G+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of CmoCh17G005810 vs. TrEMBL
Match: B9T5C2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-43
Identity = 92/122 (75.41%), Postives = 107/122 (87.70%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP+TSTIIAMASS+EQEF+A  R++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           +K+ASRVGEKLG RLKEIGV+ + IDL EELSRP+ YR RVLPLFDSV+R GV V G +K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of CmoCh17G005810 vs. TrEMBL
Match: A0A0J8CPM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-41
Identity = 86/118 (72.88%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKI 63
           NQ HLLRL++SCRKITAQVTNP T +IIAMASSSEQEFV + R+ L+RFPRS+NFWD++I
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEKL 122
           ASRVGEKLG RLKEIGVSDV I+++EELSRP  +R  V+PLFDSV+R+G++V+GA+KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

[Close]

BLAST of CmoCh17G005810 vs. TrEMBL
Match: A0A078GE51_BRANA (BnaC04g48850D protein OS=Brassica napus GN=BnaC04g48850D PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-41
Identity = 88/118 (74.58%), Postives = 103/118 (87.29%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKI 63
           +++HLL+LVLSCRKITAQVT P TSTIIAMASSSEQEF+A +R+ L+RFPRSNNFWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGTSTIIAMASSSEQEFLAQSRANLYRFPRSNNFWDSKT 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEKL 122
           ASRVGEKLG RL+E+GV  V ID  EE+SRPV +R RVLPLFDSVRRSG+ V+G E+L
Sbjct: 65  ASRVGEKLGLRLRELGVDAVSIDAEEEISRPVHHRKRVLPLFDSVRRSGIRVDGTEQL 122

[Close]

BLAST of CmoCh17G005810 vs. TrEMBL
Match: F6HYR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.3e-41
Identity = 86/123 (69.92%), Postives = 106/123 (86.18%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           M    +HLLRLVLSCRK+TAQVT+P T +I+AMASSSE EF+A  R+KLHRFPRS+NFWD
Sbjct: 1   MEGQHHHLLRLVLSCRKLTAQVTSPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           +KIASR+GEKLG RL++IGVSDV ID+ EELSRP+ +R  V+PLF+SVRR G++V+GAEK
Sbjct: 61  AKIASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEK 120

Query: 121 LGS 124
           L S
Sbjct: 121 LES 123

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BLAST of CmoCh17G005810 vs. TAIR10
Match: AT2G43310.1 (AT2G43310.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 166.8 bits (421), Expect = 8.7e-42
Identity = 83/118 (70.34%), Postives = 102/118 (86.44%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKI 63
           +++HLL+LVLSCRKITAQVT P +STIIAMASSSEQEF+A +R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEKL 122
           ASRVGEKLG RL+E+GV  V ID  EE+SRP+ +R RVLPLFDSVRR+G+ V+G E+L
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQL 122

[Close]

BLAST of CmoCh17G005810 vs. NCBI nr
Match: gi|449446251|ref|XP_004140885.1| (PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 114/126 (90.48%), Postives = 121/126 (96.03%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           SK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  VLPLFDSV+RSGVAV+GAEK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGSGAI 127
           LG+G+I
Sbjct: 121 LGTGSI 126

[Close]

BLAST of CmoCh17G005810 vs. NCBI nr
Match: gi|659089892|ref|XP_008445736.1| (PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 7.2e-54
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           SK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+ YR  VLPLFDSV+RSG+AV+G EK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGSGAI 127
           LG G+I
Sbjct: 121 LGKGSI 126

[Close]

BLAST of CmoCh17G005810 vs. NCBI nr
Match: gi|255585499|ref|XP_002533441.1| (PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis])

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-43
Identity = 92/122 (75.41%), Postives = 107/122 (87.70%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP+TSTIIAMASS+EQEF+A  R++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           +K+ASRVGEKLG RLKEIGV+ + IDL EELSRP+ YR RVLPLFDSV+R GV V G +K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of CmoCh17G005810 vs. NCBI nr
Match: gi|802559377|ref|XP_012066153.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105629220 [Jatropha curcas])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 90/122 (73.77%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60
           MS N  H+LRLVLSCRKITAQVTNP+TSTIIAMASS+EQ F+A  R++L+RFPR    WD
Sbjct: 1   MSGNHQHMLRLVLSCRKITAQVTNPNTSTIIAMASSTEQGFLAEYRTRLNRFPRXTLHWD 60

Query: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120
           SK+ASRVGEKLG RLKEIG++++ IDL EELSRP+ YR RVLPLFDSV+R GVAV+GA+K
Sbjct: 61  SKMASRVGEKLGFRLKEIGITNINIDLDEELSRPIHYRKRVLPLFDSVKRVGVAVDGADK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of CmoCh17G005810 vs. NCBI nr
Match: gi|731322931|ref|XP_010672162.1| (PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 174.9 bits (442), Expect = 9.1e-41
Identity = 86/118 (72.88%), Postives = 106/118 (89.83%), Query Frame = 1


Query: 4   NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKI 63
           NQ HLLRL++SCRKITAQVTNP T +IIAMASSSEQEFV + R+ L+RFPRS+NFWD++I
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEKL 122
           ASRVGEKLG RLKEIGVSDV I+++EELSRP  +R  V+PLFDSV+R+G++V+GA+KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

The following BLAST results are available for this feature:

BLAST of CmoCh17G005810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G005810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE39_CUCSA	1.2e-55	90.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1	[more]
B9T5C2_RICCO	1.8e-43	75.41	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1	[more]
A0A0J8CPM9_BETVU	6.3e-41	72.88	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 S...	[more]
A0A078GE51_BRANA	6.3e-41	74.58	BnaC04g48850D protein OS=Brassica napus GN=BnaC04g48850D PE=4 SV=1	[more]
F6HYR6_VITVI	8.3e-41	69.92	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=...	[more]

BLAST of CmoCh17G005810 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43310.1	8.7e-42	70.34	Ribosomal L18p/L5e family protein	[more]

BLAST of CmoCh17G005810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446251\|ref\|XP_004140885.1\|	1.7e-55	90.48	PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
gi\|659089892\|ref\|XP_008445736.1\|	7.2e-54	88.10	PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo]	[more]
gi\|255585499\|ref\|XP_002533441.1\|	2.6e-43	75.41	PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis]	[more]
gi\|802559377\|ref\|XP_012066153.1\|	1.4e-41	73.77	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105629220 [Jatropha c...	[more]
gi\|731322931\|ref\|XP_010672162.1\|	9.1e-41	72.88	PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005810.1	CmoCh17G005810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 5..114 score: 2.8
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..121 score: 1.7
None	No IPR available	PANTHER	PTHR12899:SF6	F14B2.25/F14B2.25	coord: 1..121 score: 1.7
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 5..112 score: 2.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G005810	Cucsa.364970	Cucumber (Gy14) v1	cgycmoB1001
CmoCh17G005810	CmaCh17G006010	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G005810	Csa6G042360	Cucumber (Chinese Long) v2	cmocuB364
CmoCh17G005810	MELO3C011656	Melon (DHL92) v3.5.1	cmomeB324
CmoCh17G005810	CSPI06G03620	Wild cucumber (PI 183967)	cmocpiB366
CmoCh17G005810	Lsi08G003710	Bottle gourd (USVL1VR-Ls)	cmolsiB350
CmoCh17G005810	Cp4.1LG12g05020	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G005810	MELO3C011656.2	Melon (DHL92) v3.6.1	cmomedB371
CmoCh17G005810	CsaV3_6G003910	Cucumber (Chinese Long) v3	cmocucB0438
CmoCh17G005810	CsGy6G003580	Cucumber (Gy14) v2	cgybcmoB739

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G005810	Silver-seed gourd	carcmoB0118
CmoCh17G005810	Watermelon (97103) v2	cmowmbB368
CmoCh17G005810	Wax gourd	cmowgoB0484
CmoCh17G005810	Cucurbita moschata (Rifu)	cmocmoB327
CmoCh17G005810	Cucurbita maxima (Rimu)	cmacmoB903
CmoCh17G005810	Watermelon (Charleston Gray)	cmowcgB332
CmoCh17G005810	Cucurbita pepo (Zucchini)	cmocpeB356