MELO3C011656 (gene) Melon (DHL92) v3.5.1

NameMELO3C011656
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L18
Locationchr3 : 11178857 .. 11179682 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTCAATGGGAGAAGATAATAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCAGTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGCCTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAGGGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGACTCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAAATTGTTTTCATAATTAGTGAAAGAAATAGAGAAGAGACCAATTTCCCCTTTGGAATTTTGGCCATTTTGTCCTTGGCAGTGTTGAACTGCCTACAGATTATACTTGGCTGAAAAAAAAGGTAGCTATTGTAATTAGACAATATTTTTTTAAATAACTCCTAACGTCGATGAATGTATCAAAACAAAACATTGAAGTTTAATTTGATTCAATTATTAATTTGGG

mRNA sequence

AAAGTTCAATGGGAGAAGATAATAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCAGTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGCCTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAGGGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGACTCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAAATTGTTTTCATAATTAGTGAAAGAAATAGAGAAGAGACCAATTTCCCCTTTGGAATTTTGGCCATTTTGTCCTTGGCAGTGTTGAACTGCCTACAGATTATACTTGGCTGAAAAAAAAGGTAGCTATTGTAATTAGACAATATTTTTTTAAATAACTCCTAACGTCGATGAATGTATCAAAACAAAACATTGAAGTTTAATTTGATTCAATTATTAATTTGGG

Coding sequence (CDS)

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAG

Protein sequence

MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKLGKGSI*
BLAST of MELO3C011656 vs. TrEMBL
Match: A0A0A0KE39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.6e-60
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGSI 127
           LG GSI
Sbjct: 121 LGTGSI 126

BLAST of MELO3C011656 vs. TrEMBL
Match: B9T5C2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.1e-44
Identity = 92/123 (74.80%), Postives = 109/123 (88.62%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP TS+IIAMASS+EQEF+A YR++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           +K+ASRVG KLG RLKEIGV+ + IDL EELSRPI+YRK VLPLFDSV+R G+ V GV+K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LGK 124
           LG+
Sbjct: 121 LGE 123

BLAST of MELO3C011656 vs. TrEMBL
Match: A0A0J8CPM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.9e-43
Identity = 87/118 (73.73%), Postives = 108/118 (91.53%), Query Frame = 1

Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL++SCRKITAQVTNPAT SIIAMASSSEQEFV +YR+ L+RFPRS+NFWD+++
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKL 122
           ASRVG KLG RLKEIGVSDV I+++EELSRP ++R++V+PLFDSV+R+GI+V G +KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

BLAST of MELO3C011656 vs. TrEMBL
Match: F6HYR6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 86/121 (71.07%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M    +HLLRLVLSCRK+TAQVT+P T SI+AMASSSE EF+A YR+KLHRFPRS+NFWD
Sbjct: 1   MEGQHHHLLRLVLSCRKLTAQVTSPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           +K+ASR+G KLG RL++IGVSDV ID+ EELSRPI++R+MV+PLF+SV+R GI+V G EK
Sbjct: 61  AKIASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEK 120

Query: 121 L 122
           L
Sbjct: 121 L 121

BLAST of MELO3C011656 vs. TrEMBL
Match: A0A103XYM3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022475 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 1

Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL LSCRKITAQVT P T SI+AMASS+EQEF+A+YRSKL  FPRS+ FWD+K+
Sbjct: 5   NQGHLLRLALSCRKITAQVTTPGTDSIVAMASSTEQEFMAHYRSKLTTFPRSHKFWDAKI 64

Query: 64  ASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKL 122
           ASR+G KLG RL +IG+S + IDL EELSRPI+YRKMV+P F+SV+R+GI+V G EKL
Sbjct: 65  ASRIGEKLGFRLNDIGISHLEIDLTEELSRPIHYRKMVVPFFNSVKRAGISVHGSEKL 122

BLAST of MELO3C011656 vs. TAIR10
Match: AT2G43310.1 (AT2G43310.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-41
Identity = 84/123 (68.29%), Postives = 101/123 (82.11%), Query Frame = 1

Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKLGK 123
           ASRVG KLG RL+E+GV  V ID  EE+SRPI++RK VLPLFDSV+R+GI VDG E+L  
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQLND 124

Query: 124 GSI 127
            S+
Sbjct: 125 ISV 127

BLAST of MELO3C011656 vs. NCBI nr
Match: gi|659089892|ref|XP_008445736.1| (PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 1.9e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGKGSI 127
           LGKGSI
Sbjct: 121 LGKGSI 126

BLAST of MELO3C011656 vs. NCBI nr
Match: gi|449446251|ref|XP_004140885.1| (PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGSI 127
           LG GSI
Sbjct: 121 LGTGSI 126

BLAST of MELO3C011656 vs. NCBI nr
Match: gi|255585499|ref|XP_002533441.1| (PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis])

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 92/123 (74.80%), Postives = 109/123 (88.62%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M+ N  HLLRLVLSCRKITAQVTNP TS+IIAMASS+EQEF+A YR++L+RFPRS+NFWD
Sbjct: 1   MAGNNQHLLRLVLSCRKITAQVTNPNTSTIIAMASSTEQEFLAQYRARLNRFPRSHNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           +K+ASRVG KLG RLKEIGV+ + IDL EELSRPI+YRK VLPLFDSV+R G+ V GV+K
Sbjct: 61  AKMASRVGEKLGFRLKEIGVTSINIDLDEELSRPIHYRKRVLPLFDSVKRVGVDVGGVDK 120

Query: 121 LGK 124
           LG+
Sbjct: 121 LGE 123

BLAST of MELO3C011656 vs. NCBI nr
Match: gi|731322931|ref|XP_010672162.1| (PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 87/118 (73.73%), Postives = 108/118 (91.53%), Query Frame = 1

Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           NQ HLLRL++SCRKITAQVTNPAT SIIAMASSSEQEFV +YR+ L+RFPRS+NFWD+++
Sbjct: 5   NQQHLLRLLVSCRKITAQVTNPATESIIAMASSSEQEFVPHYRTHLNRFPRSHNFWDARI 64

Query: 64  ASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKL 122
           ASRVG KLG RLKEIGVSDV I+++EELSRP ++R++V+PLFDSV+R+GI+V G +KL
Sbjct: 65  ASRVGEKLGFRLKEIGVSDVEINISEELSRPHHHRRLVIPLFDSVKRTGISVSGADKL 122

BLAST of MELO3C011656 vs. NCBI nr
Match: gi|225433866|ref|XP_002265052.1| (PREDICTED: uncharacterized protein LOC100264652 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 8.3e-42
Identity = 86/121 (71.07%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           M    +HLLRLVLSCRK+TAQVT+P T SI+AMASSSE EF+A YR+KLHRFPRS+NFWD
Sbjct: 1   MEGQHHHLLRLVLSCRKLTAQVTSPRTDSIVAMASSSENEFLAQYRAKLHRFPRSHNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           +K+ASR+G KLG RL++IGVSDV ID+ EELSRPI++R+MV+PLF+SV+R GI+V G EK
Sbjct: 61  AKIASRIGEKLGLRLRDIGVSDVEIDIHEELSRPIHHRRMVMPLFESVRRVGISVSGAEK 120

Query: 121 L 122
           L
Sbjct: 121 L 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KE39_CUCSA1.6e-6096.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G042360 PE=4 SV=1[more]
B9T5C2_RICCO8.1e-4474.80Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0655970 PE=4 SV=1[more]
A0A0J8CPM9_BETVU8.9e-4373.73Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057010 PE=4 S... [more]
F6HYR6_VITVI5.8e-4271.07Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00290 PE=4 SV=... [more]
A0A103XYM3_CYNCS1.4e-4071.19Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_022475 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT2G43310.12.0e-4168.29 Ribosomal L18p/L5e family protein[more]
Match NameE-valueIdentityDescription
gi|659089892|ref|XP_008445736.1|1.9e-62100.00PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo][more]
gi|449446251|ref|XP_004140885.1|2.3e-6096.83PREDICTED: uncharacterized protein LOC101204363 [Cucumis sativus][more]
gi|255585499|ref|XP_002533441.1|1.2e-4374.80PREDICTED: uncharacterized protein LOC8280415 [Ricinus communis][more]
gi|731322931|ref|XP_010672162.1|1.3e-4273.73PREDICTED: uncharacterized protein LOC104888786 [Beta vulgaris subsp. vulgaris][more]
gi|225433866|ref|XP_002265052.1|8.3e-4271.07PREDICTED: uncharacterized protein LOC100264652 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU47823melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011656T1MELO3C011656T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU47823MU47823transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 5..114
score: 2.0
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..121
score: 9.2
NoneNo IPR availablePANTHERPTHR12899:SF6F14B2.25/F14B2.25coord: 1..121
score: 9.2
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 5..89
score: 2.3