Cucsa.321360 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.321360
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DVA-1 polyprotein
Location	scaffold03080 : 1163181 .. 1165705 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGGTTCATCCCACTTTCTCCGCTCCTCAGTCTCTCAATTTACCTCTTATTCTTCTAAATTTGATGGTTGAAGGACTTCTTTTTCTTCACAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGGTCGAATTTTCTTCGTTTTTAACCTATATTGAATGTTAGGATTAGTACTTGTTTATTAGCTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTGTATCAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGGTACCTACTTCCCTTTTGATTTTGATTTTTTTTTCTAAAAAAATCTGCTTTTATTTTCTTTGCTGCTTATTATAGTTTGAAATCTGGACACGTGCTTAGAATTTTCACTGCATTCACATTTAGAAGTCTAATTGCAAACACGAGCACACCCGTTGAGTCATAATTTTGTGTTTAATGTTGCCTAGATTTTAAAGTTTAGGATTATGTTAGCTTAGTCAAGTAGTACAAATTATTTGACCAATGATTCTCTTCCCCAATTAGGTAATACTTTGTTGTATCCTCAGCTGTTGTGTATCTCATTCAATTTGTTCAATCATTGTTTACCTTGTGGTAAACGCTTCATACATAAGATCTGTGTTTGTTGCAAAATCTATGCATGGGCATGGATGCCTGATGGCTGGCTAGGAAATACTCACTGGCTGTTGTCCTTTTCTTGGTTTTCTCATTGTCTGGAAGTATATGGGTTTTTTTAGTTTCAGTTTTTATAGCTTTTGCAAGTTGTGTTCTGTTTTCGCTTATGCAAGTGATGATGGGAATTTCCAGTTGTTGGTTTAAAACTTTGAGTATTATGCAGTTTGAAGTGATATTTAGTGGTTGGAATAATACTGACTATATAACATGTAGTGTTGTTAAGTTACCAACTATTGCTAACTTCATAGCACTATTATGAGATGTAATGTAGAGGTTGTTTGTAGCAACTGTTTCCGACTATATAACATCTTGCACTTCAGCTGGAAACTTATCTCCCATGTTTATGTCGGTACTGCCTTTGGAACATAGAACATTCAGCATCAAATTTGAATATATTATAGTGCTTGCGGTGCTTGTTTCCTCTAAGGAGTTGCTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGTTTGTATATTGACCAACTACTACTTAAAAAAACATTCATTGTTCCTGATAGATACATTCTTGTTAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGTAAGTCACTTTTCCTTGTAAGTTGTGTCGTAGACGTGGTAGCTTGGTTTCTCATTATTTTTAATGTCATAATTCGATCTAAATAGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC

mRNA sequence

GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC

Coding sequence (CDS)

ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA

Protein sequence

MRHPSKDLLYLERKDLSSSSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS*

Homology

[Close]

BLAST of Cucsa.321360 vs. TrEMBL
Match: A0A0A0L448_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 4.6e-105
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 207
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360 vs. TrEMBL
Match: V4S6C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49
Identity = 118/205 (57.56%), Postives = 144/205 (70.24%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRV 64
           SKDLL+LE KD S+S++    ES+LLVC K  T+   K P   + P   P  +S VLG+V
Sbjct: 5   SKDLLHLEHKDSSASAI----ESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKV 64

Query: 65  KDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAES 124
           K FLGVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAES
Sbjct: 65  KGFLGVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAES 124

Query: 125 AIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNS 184
           AI GN P IPL  SSSE+E+E+SSDD   SD D +DN+  D           + LKRS +
Sbjct: 125 AIAGNQPAIPLPASSSETETEDSSDD---SDDDVEDNKTLD----------PMNLKRSET 184

Query: 185 RKTSCRSKSKGKGKSKKRPKIQVLS 207
            K    S+S G  KSKKRPKI  LS
Sbjct: 185 NKDDSLSESAGNKKSKKRPKIVELS 192

[Close]

BLAST of Cucsa.321360 vs. TrEMBL
Match: V4SAU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 118/205 (57.56%), Postives = 143/205 (69.76%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRV 64
           SKDLL+LE KD S+S++    ES+LLVC K  T+   K P   + P   P  +S VLG+V
Sbjct: 16  SKDLLHLEHKDSSASAI----ESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKV 75

Query: 65  KDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAES 124
           K FLGVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAES
Sbjct: 76  KGFLGVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAES 135

Query: 125 AIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNS 184
           AI GN P IPL  SSSE+E+E SSDD   SD D +DN+  D           + LKRS +
Sbjct: 136 AIAGNQPAIPLPASSSETETENSSDD---SDDDVEDNKTLD----------PMNLKRSET 195

Query: 185 RKTSCRSKSKGKGKSKKRPKIQVLS 207
            K    S+S G  KSKKRPKI  LS
Sbjct: 196 NKDDSLSESAGNKKSKKRPKIVELS 203

[Close]

BLAST of Cucsa.321360 vs. TrEMBL
Match: V4U9K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 118/205 (57.56%), Postives = 143/205 (69.76%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRV 64
           SKDLL+LE KD S+S++    ES+LLVC K  T+   K P   + P   P  +S VLG+V
Sbjct: 18  SKDLLHLEHKDSSASAI----ESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKV 77

Query: 65  KDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAES 124
           K FLGVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAES
Sbjct: 78  KGFLGVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAES 137

Query: 125 AIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNS 184
           AI GN P IPL  SSSE+E+E SSDD   SD D +DN+  D           + LKRS +
Sbjct: 138 AIAGNQPAIPLPASSSETETENSSDD---SDDDVEDNKTLD----------PMNLKRSET 197

Query: 185 RKTSCRSKSKGKGKSKKRPKIQVLS 207
            K    S+S G  KSKKRPKI  LS
Sbjct: 198 NKDDSLSESAGNKKSKKRPKIVELS 205

[Close]

BLAST of Cucsa.321360 vs. TrEMBL
Match: W9QZQ7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003729 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.3e-47
Identity = 117/216 (54.17%), Postives = 142/216 (65.74%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTR-NEKPITEPASKSLVLG 60
           M + SKDLL+LE K+ S+SSL    ES+LLVCK +S  K  T+ +EKPIT P  +S VLG
Sbjct: 1   MGNTSKDLLHLEHKNPSASSL----ESALLVCKNDSQRKKETKPHEKPITAPIPQSQVLG 60

Query: 61  RVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAA 120
           +VKDFLGVISEANK L++D+K NAE YDIEAL G+ES+VI++DLMLGIADLHTPEAV AA
Sbjct: 61  KVKDFLGVISEANKSLELDAKVNAENYDIEALTGDESQVIEMDLMLGIADLHTPEAVAAA 120

Query: 121 ESAIIGNHPVIPLTCSSSESESE-------------ESSDDSITSDHDNDDNEKSDDQKT 180
           ESAI G  P IPL  SSSESES+             ES D S   +  N D+   D +  
Sbjct: 121 ESAISGYQPAIPLADSSSESESDSDPESDSNLDTDSESEDSSDKGETINGDDNDEDSENQ 180

Query: 181 DCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKI 203
           +C    S+K K S S K +   +     KS KRPKI
Sbjct: 181 NCKKLSSMKPKTSKSDKGNSSGEVTKNRKSSKRPKI 212

[Close]

BLAST of Cucsa.321360 vs. TAIR10
Match: AT1G71430.1 (AT1G71430.1 unknown protein)

HSP 1 Score: 120.9 bits (302), Expect = 9.0e-28
Identity = 77/171 (45.03%), Postives = 106/171 (61.99%), Query Frame = 1


Query: 6   KDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSK---DPTRNEKPITEPASKSLVLGRVK 65
           KDLL LE K+ SSSS     +S+LL+C   +  K   +     KP   P  KS +LG++K
Sbjct: 8   KDLLKLELKNPSSSSA---MDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLK 67

Query: 66  DFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESA 125
            FLGV++EANKK    S+ N E Y+IEAL GNESE+I++DLMLG+ADL+TPEAV+AAE+A
Sbjct: 68  GFLGVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAA 127

Query: 126 IIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS 174
           I G  P          +ES +SS D    D  + ++E  + +  +CS + S
Sbjct: 128 IAGIGPA---------AESGDSSSD----DESDSESEGEESKSAECSRKRS 158

[Close]

BLAST of Cucsa.321360 vs. NCBI nr
Match: gi|778675224|ref|XP_011650372.1| (PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus])

HSP 1 Score: 402.9 bits (1034), Expect = 3.4e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 207
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206

[Close]

BLAST of Cucsa.321360 vs. NCBI nr
Match: gi|778675227|ref|XP_004147238.2| (PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 6.6e-105
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 207
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360 vs. NCBI nr
Match: gi|659095798|ref|XP_008448773.1| (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 9.2e-99
Identity = 191/206 (92.72%), Postives = 197/206 (95.63%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRH SKDLL+LERKDLS+SSL    ESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGR
Sbjct: 1   MRHASKDLLHLERKDLSTSSL----ESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           V+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLMLGIADLHTPEAV AAE
Sbjct: 61  VQDFLGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 207
           SRK SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKASCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360 vs. NCBI nr
Match: gi|568867059|ref|XP_006486863.1| (PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 119/205 (58.05%), Postives = 144/205 (70.24%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRV 64
           SKDLL+LE KD S+S++    ES LLVC K  T+   K P   + P   P  +S VLG+V
Sbjct: 5   SKDLLHLEHKDSSASAI----ESVLLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKV 64

Query: 65  KDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAES 124
           K FLGVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAES
Sbjct: 65  KGFLGVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAES 124

Query: 125 AIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNS 184
           AI GN P IPL  SSSE+E+E+SSDDS  SD D +DN+  D           + LKRS +
Sbjct: 125 AIAGNQPAIPLPASSSETETEDSSDDSDDSDDDVEDNKTLD----------PMNLKRSET 184

Query: 185 RKTSCRSKSKGKGKSKKRPKIQVLS 207
            K    S+S G  KSKKRPKI  LS
Sbjct: 185 NKDDSLSESAGNKKSKKRPKIVELS 195

[Close]

BLAST of Cucsa.321360 vs. NCBI nr
Match: gi|567860092|ref|XP_006422700.1| (hypothetical protein CICLE_v10029331mg [Citrus clementina])

HSP 1 Score: 204.1 bits (518), Expect = 2.3e-49
Identity = 118/205 (57.56%), Postives = 144/205 (70.24%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRV 64
           SKDLL+LE KD S+S++    ES+LLVC K  T+   K P   + P   P  +S VLG+V
Sbjct: 5   SKDLLHLEHKDSSASAI----ESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKV 64

Query: 65  KDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAES 124
           K FLGVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAES
Sbjct: 65  KGFLGVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAES 124

Query: 125 AIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNS 184
           AI GN P IPL  SSSE+E+E+SSDD   SD D +DN+  D           + LKRS +
Sbjct: 125 AIAGNQPAIPLPASSSETETEDSSDD---SDDDVEDNKTLD----------PMNLKRSET 184

Query: 185 RKTSCRSKSKGKGKSKKRPKIQVLS 207
            K    S+S G  KSKKRPKI  LS
Sbjct: 185 NKDDSLSESAGNKKSKKRPKIVELS 192

The following BLAST results are available for this feature:

BLAST of Cucsa.321360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L448_CUCSA	4.6e-105	98.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1	[more]
V4S6C7_9ROSI	1.6e-49	57.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1	[more]
V4SAU0_9ROSI	2.7e-49	57.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
V4U9K2_9ROSI	2.7e-49	57.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
W9QZQ7_9ROSA	3.3e-47	54.17	Uncharacterized protein OS=Morus notabilis GN=L484_003729 PE=4 SV=1	[more]

BLAST of Cucsa.321360 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71430.1	9.0e-28	45.03	unknown protein	[more]

BLAST of Cucsa.321360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675224\|ref\|XP_011650372.1\|	3.4e-109	100.00	PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]	[more]
gi\|778675227\|ref\|XP_004147238.2\|	6.6e-105	98.06	PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
gi\|659095798\|ref\|XP_008448773.1\|	9.2e-99	92.72	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]	[more]
gi\|568867059\|ref\|XP_006486863.1\|	1.2e-50	58.05	PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis]	[more]
gi\|567860092\|ref\|XP_006422700.1\|	2.3e-49	57.56	hypothetical protein CICLE_v10029331mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027921	DUF4598
IPR027921	DUF4598
IPR027921	DUF4598

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.321360.3	Cucsa.321360.3	mRNA
Cucsa.321360.2	Cucsa.321360.2	mRNA
Cucsa.321360.1	Cucsa.321360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	Protein of unknown function DUF4598	PFAM	PF15370	DUF4598	coord: 23..168 score: 6.8
None	No IPR available	PANTHER	PTHR28674	FAMILY NOT NAMED	coord: 146..171 score: 1.6E-36coord: 20..114 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.321360	Cla008756	Watermelon (97103) v1	cgywmB583
Cucsa.321360	Csa3G017130	Cucumber (Chinese Long) v2	cgycuB458
Cucsa.321360	MELO3C013897	Melon (DHL92) v3.5.1	cgymeB532
Cucsa.321360	ClCG10G002170	Watermelon (Charleston Gray)	cgywcgB556
Cucsa.321360	CSPI03G02230	Wild cucumber (PI 183967)	cgycpiB484
Cucsa.321360	CmaCh06G008210	Cucurbita maxima (Rimu)	cgycmaB0897
Cucsa.321360	CmoCh06G008430	Cucurbita moschata (Rifu)	cgycmoB0893
Cucsa.321360	Lsi07G012510	Bottle gourd (USVL1VR-Ls)	cgylsiB530
Cucsa.321360	Cp4.1LG08g06940	Cucurbita pepo (Zucchini)	cgycpeB0855
Cucsa.321360	MELO3C013897.2	Melon (DHL92) v3.6.1	cgymedB533
Cucsa.321360	CsaV3_3G002260	Cucumber (Chinese Long) v3	cgycucB499
Cucsa.321360	Cla97C10G186810	Watermelon (97103) v2	cgywmbB562
Cucsa.321360	Bhi11G000072	Wax gourd	cgywgoB642
Cucsa.321360	Carg12053	Silver-seed gourd	carcgyB0642

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.321360	Silver-seed gourd	carcgyB0792
Cucsa.321360	Silver-seed gourd	carcgyB0891
Cucsa.321360	Cucumber (Chinese Long) v3	cgycucB500
Cucsa.321360	Watermelon (97103) v2	cgywmbB563
Cucsa.321360	Cucumber (Gy14) v1	cgycgyB146
Cucsa.321360	Cucurbita maxima (Rimu)	cgycmaB0889
Cucsa.321360	Cucurbita maxima (Rimu)	cgycmaB0892
Cucsa.321360	Cucurbita maxima (Rimu)	cgycmaB0893
Cucsa.321360	Cucurbita moschata (Rifu)	cgycmoB0887
Cucsa.321360	Cucurbita moschata (Rifu)	cgycmoB0889
Cucsa.321360	Wild cucumber (PI 183967)	cgycpiB485
Cucsa.321360	Cucumber (Chinese Long) v2	cgycuB459
Cucsa.321360	Melon (DHL92) v3.5.1	cgymeB531
Cucsa.321360	Watermelon (Charleston Gray)	cgywcgB555
Cucsa.321360	Watermelon (97103) v1	cgywmB582
Cucsa.321360	Cucurbita pepo (Zucchini)	cgycpeB0847
Cucsa.321360	Cucurbita pepo (Zucchini)	cgycpeB0853
Cucsa.321360	Cucurbita pepo (Zucchini)	cgycpeB0857
Cucsa.321360	Bottle gourd (USVL1VR-Ls)	cgylsiB529
Cucsa.321360	Melon (DHL92) v3.6.1	cgymedB532