Cla008756 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008756
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 24615 .. 25179 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCAAAGGTTTGCATATTGACCAATGACTACTTAAATTTGAATCTATGTTTTCATTGTTCCTGATCTATACATGATTGTCAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGTAAGTCACTTTTCCTTGTATTGTTGCATCGTGGATGTTGTAGCTTGATTTTTCATCGTTCATAATGTCGTGATTTGATCTTAAACAGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

mRNA sequence

ATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

Coding sequence (CDS)

ATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAA

Protein sequence

MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKLKKRPKILELS

Homology

[Close]

BLAST of Cla008756 vs. TrEMBL
Match: A0A0A0L448_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-54
Identity = 112/130 (86.15%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           MD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAIIGN PVIPLTCSS
Sbjct: 73  MDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSS 132

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSNSRKTSCRSKSKGKGK 
Sbjct: 133 SESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS 192

Query: 121 KKRPKILELS 131
           KKRPKI  LS
Sbjct: 193 KKRPKIQVLS 202

[Close]

BLAST of Cla008756 vs. TrEMBL
Match: V4S6C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.0e-31
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK+NA+ YD+E L GNESEVIE+DLMLGIADLHTPEAV+AAESAI GNQP IPL  SS
Sbjct: 76  LDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAGNQPAIPLPASS 135

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE+++E+SSDDS        D++  DN+  D  N     LKRS + K    S+S G  K 
Sbjct: 136 SETETEDSSDDS--------DDDVEDNKTLDPMN-----LKRSETNKDDSLSESAGNKKS 192

Query: 121 KKRPKILELS 131
           KKRPKI+ELS
Sbjct: 196 KKRPKIVELS 192

[Close]

BLAST of Cla008756 vs. TrEMBL
Match: V4U9K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 78/130 (60.00%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK+NA+ YD+E L GNESEVIE+DLMLGIADLHTPEAV+AAESAI GNQP IPL  SS
Sbjct: 89  LDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAGNQPAIPLPASS 148

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE+++E SSDDS        D++  DN+  D  N     LKRS + K    S+S G  K 
Sbjct: 149 SETETENSSDDS--------DDDVEDNKTLDPMN-----LKRSETNKDDSLSESAGNKKS 205

Query: 121 KKRPKILELS 131
           KKRPKI+ELS
Sbjct: 209 KKRPKIVELS 205

[Close]

BLAST of Cla008756 vs. TrEMBL
Match: V4SAU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 78/130 (60.00%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK+NA+ YD+E L GNESEVIE+DLMLGIADLHTPEAV+AAESAI GNQP IPL  SS
Sbjct: 87  LDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAGNQPAIPLPASS 146

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE+++E SSDDS        D++  DN+  D  N     LKRS + K    S+S G  K 
Sbjct: 147 SETETENSSDDS--------DDDVEDNKTLDPMN-----LKRSETNKDDSLSESAGNKKS 203

Query: 121 KKRPKILELS 131
           KKRPKI+ELS
Sbjct: 207 KKRPKIVELS 203

[Close]

BLAST of Cla008756 vs. TrEMBL
Match: A0A061DX55_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006330 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 77/130 (59.23%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK N++ YDIE L+GNE EVIE+DLMLG+ADLHTPEAVAAAESAI GNQP I L  SS
Sbjct: 74  LDAKNNSQAYDIEVLNGNEPEVIEMDLMLGVADLHTPEAVAAAESAIAGNQPAITLAGSS 133

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE++S++SSDDS      NDDNE+S N   D  N++S KL++SN+ K    S++  K + 
Sbjct: 134 SETESDDSSDDS------NDDNEESKNDGND-DNETSRKLEKSNTGKDHTISEAARKHRS 193

Query: 121 KKRPKILELS 131
           KKR +I+ELS
Sbjct: 194 KKRSRIVELS 196

[Close]

BLAST of Cla008756 vs. NCBI nr
Match: gi|778675224|ref|XP_011650372.1| (PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-54
Identity = 112/130 (86.15%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           MD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAIIGN PVIPLTCSS
Sbjct: 77  MDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSS 136

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSNSRKTSCRSKSKGKGK 
Sbjct: 137 SESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS 196

Query: 121 KKRPKILELS 131
           KKRPKI  LS
Sbjct: 197 KKRPKIQVLS 206

[Close]

BLAST of Cla008756 vs. NCBI nr
Match: gi|778675227|ref|XP_004147238.2| (PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-54
Identity = 112/130 (86.15%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           MD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAIIGN PVIPLTCSS
Sbjct: 73  MDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSS 132

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSNSRKTSCRSKSKGKGK 
Sbjct: 133 SESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKS 192

Query: 121 KKRPKILELS 131
           KKRPKI  LS
Sbjct: 193 KKRPKIQVLS 202

[Close]

BLAST of Cla008756 vs. NCBI nr
Match: gi|659095798|ref|XP_008448773.1| (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.8e-53
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           MD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAIIGN PVIPLTCSS
Sbjct: 73  MDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAIIGNHPVIPLTCSS 132

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SES+SEESSDDSIT D++N+DNEKSD+Q TD SN+ S KLKRSNSRK SCRSKSKGKGK 
Sbjct: 133 SESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKASCRSKSKGKGKS 192

Query: 121 KKRPKILELS 131
           KKRPKI  LS
Sbjct: 193 KKRPKIQVLS 202

[Close]

BLAST of Cla008756 vs. NCBI nr
Match: gi|568867059|ref|XP_006486863.1| (PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis])

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 81/130 (62.31%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK+NA+ YD+E L GNESEVIE+DLMLGIADLHTPEAV+AAESAI GNQP IPL  SS
Sbjct: 76  LDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAGNQPAIPLPASS 135

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE+++E+SSDDS   D+++DD E  DN+  D  N     LKRS + K    S+S G  K 
Sbjct: 136 SETETEDSSDDS---DDSDDDVE--DNKTLDPMN-----LKRSETNKDDSLSESAGNKKS 195

Query: 121 KKRPKILELS 131
           KKRPKI+ELS
Sbjct: 196 KKRPKIVELS 195

[Close]

BLAST of Cla008756 vs. NCBI nr
Match: gi|567860092|ref|XP_006422700.1| (hypothetical protein CICLE_v10029331mg [Citrus clementina])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 78/130 (60.00%), Postives = 94/130 (72.31%), Query Frame = 1


Query: 1   MDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSS 60
           +DAK+NA+ YD+E L GNESEVIE+DLMLGIADLHTPEAV+AAESAI GNQP IPL  SS
Sbjct: 76  LDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAGNQPAIPLPASS 135

Query: 61  SESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKGKL 120
           SE+++E+SSDDS        D++  DN+  D  N     LKRS + K    S+S G  K 
Sbjct: 136 SETETEDSSDDS--------DDDVEDNKTLDPMN-----LKRSETNKDDSLSESAGNKKS 192

Query: 121 KKRPKILELS 131
           KKRPKI+ELS
Sbjct: 196 KKRPKIVELS 192

The following BLAST results are available for this feature:

BLAST of Cla008756 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L448_CUCSA	3.0e-54	86.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1	[more]
V4S6C7_9ROSI	8.0e-31	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1	[more]
V4U9K2_9ROSI	1.4e-30	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
V4SAU0_9ROSI	1.4e-30	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
A0A061DX55_THECC	1.4e-30	59.23	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006330 PE=4 SV=1	[more]

BLAST of Cla008756 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675224\|ref\|XP_011650372.1\|	4.3e-54	86.15	PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]	[more]
gi\|778675227\|ref\|XP_004147238.2\|	4.3e-54	86.15	PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
gi\|659095798\|ref\|XP_008448773.1\|	4.8e-53	84.62	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]	[more]
gi\|568867059\|ref\|XP_006486863.1\|	1.4e-31	62.31	PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis]	[more]
gi\|567860092\|ref\|XP_006422700.1\|	1.1e-30	60.00	hypothetical protein CICLE_v10029331mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027921	DUF4598

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008756	Cla008756.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	Protein of unknown function DUF4598	PFAM	PF15370	DUF4598	coord: 3..128 score: 5.
None	No IPR available	PANTHER	PTHR28674	FAMILY NOT NAMED	coord: 2..73 score: 7.1E-22coord: 105..130 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008756	Cla97C10G186810	Watermelon (97103) v2	wmwmbB056
Cla008756	Csa3G017130	Cucumber (Chinese Long) v2	cuwmB200
Cla008756	MELO3C013897	Melon (DHL92) v3.5.1	mewmB446
Cla008756	ClCG10G002170	Watermelon (Charleston Gray)	wcgwmB056
Cla008756	CSPI03G02230	Wild cucumber (PI 183967)	cpiwmB200
Cla008756	Cucsa.321360	Cucumber (Gy14) v1	cgywmB583
Cla008756	CmaCh06G008210	Cucurbita maxima (Rimu)	cmawmB784
Cla008756	CmoCh06G008430	Cucurbita moschata (Rifu)	cmowmB777
Cla008756	Lsi07G012510	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008756	Cp4.1LG08g06940	Cucurbita pepo (Zucchini)	cpewmB832
Cla008756	CsGy3G002130	Cucumber (Gy14) v2	cgybwmB188
Cla008756	MELO3C013897.2	Melon (DHL92) v3.6.1	medwmB438
Cla008756	Carg12053	Silver-seed gourd	carwmB0561
Cla008756	CsaV3_3G002260	Cucumber (Chinese Long) v3	cucwmB209
Cla008756	Bhi11G000072	Wax gourd	wgowmB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None