Cucsa.321360.2 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.321360.2
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DVA-1 polyprotein
Location	scaffold03080 : 1163181 .. 1165705 (-)
Sequence length	1161

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGGTTCATCCCACTTTCTCCGCTCCTCAGTCTCTCAATTTACCTCTTATTCTTCTAAATTTGATGGTTGAAGGACTTCTTTTTCTTCACAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGGTGTTTTTAATGGTCGAATTTTCTTCGTTTTTAACCTATATTGAATGTTAGGATTAGTACTTGTTTATTAGCTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTGTATCAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGGTACCTACTTCCCTTTTGATTTTGATTTTTTTTTCTAAAAAAATCTGCTTTTATTTTCTTTGCTGCTTATTATAGTTTGAAATCTGGACACGTGCTTAGAATTTTCACTGCATTCACATTTAGAAGTCTAATTGCAAACACGAGCACACCCGTTGAGTCATAATTTTGTGTTTAATGTTGCCTAGATTTTAAAGTTTAGGATTATGTTAGCTTAGTCAAGTAGTACAAATTATTTGACCAATGATTCTCTTCCCCAATTAGGTAATACTTTGTTGTATCCTCAGCTGTTGTGTATCTCATTCAATTTGTTCAATCATTGTTTACCTTGTGGTAAACGCTTCATACATAAGATCTGTGTTTGTTGCAAAATCTATGCATGGGCATGGATGCCTGATGGCTGGCTAGGAAATACTCACTGGCTGTTGTCCTTTTCTTGGTTTTCTCATTGTCTGGAAGTATATGGGTTTTTTTAGTTTCAGTTTTTATAGCTTTTGCAAGTTGTGTTCTGTTTTCGCTTATGCAAGTGATGATGGGAATTTCCAGTTGTTGGTTTAAAACTTTGAGTATTATGCAGTTTGAAGTGATATTTAGTGGTTGGAATAATACTGACTATATAACATGTAGTGTTGTTAAGTTACCAACTATTGCTAACTTCATAGCACTATTATGAGATGTAATGTAGAGGTTGTTTGTAGCAACTGTTTCCGACTATATAACATCTTGCACTTCAGCTGGAAACTTATCTCCCATGTTTATGTCGGTACTGCCTTTGGAACATAGAACATTCAGCATCAAATTTGAATATATTATAGTGCTTGCGGTGCTTGTTTCCTCTAAGGAGTTGCTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGTTTGTATATTGACCAACTACTACTTAAAAAAACATTCATTGTTCCTGATAGATACATTCTTGTTAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGTAAGTCACTTTTCCTTGTAAGTTGTGTCGTAGACGTGGTAGCTTGGTTTCTCATTATTTTTAATGTCATAATTCGATCTAAATAGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC

mRNA sequence

GTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCACCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGGAAGTTTTATTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGTCGGTGTGAACTGATCTTTGCTCGGCCTTGGGATTTTTAGATATTTCTCTCGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCCATTTCTATTAGGAAATGTAATAGATTTTAAGTTGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTAGATGTTTTAAAAATGGCC

Coding sequence (CDS)

ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGATCCTACTCGGAATGAAAAACCCATTACAGAACCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTGGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGCTGCTGAATCTGCAATAATTGGCAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA

Protein sequence

MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS*

Homology

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BLAST of Cucsa.321360.2 vs. TrEMBL
Match: A0A0A0L448_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 8.2e-107
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60
           MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120
           LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180
           GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKSKKRPKIQVLS 203
           SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4S6C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-51
Identity = 118/201 (58.71%), Postives = 144/201 (71.64%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRVKDFL 64
           SKDLL+LE KD S+S++ES+LLVC K  T+   K P   + P   P  +S VLG+VK FL
Sbjct: 5   SKDLLHLEHKDSSASAIESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKVKGFL 64

Query: 65  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 124
           GVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAESAI G
Sbjct: 65  GVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAG 124

Query: 125 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTS 184
           N P IPL  SSSE+E+E+SSDD   SD D +DN+  D           + LKRS + K  
Sbjct: 125 NQPAIPLPASSSETETEDSSDD---SDDDVEDNKTLD----------PMNLKRSETNKDD 184

Query: 185 CRSKSKGKGKSKKRPKIQVLS 203
             S+S G  KSKKRPKI  LS
Sbjct: 185 SLSESAGNKKSKKRPKIVELS 192

[Close]

BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4U9K2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRVKDFL 64
           SKDLL+LE KD S+S++ES+LLVC K  T+   K P   + P   P  +S VLG+VK FL
Sbjct: 18  SKDLLHLEHKDSSASAIESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKVKGFL 77

Query: 65  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 124
           GVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAESAI G
Sbjct: 78  GVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAG 137

Query: 125 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTS 184
           N P IPL  SSSE+E+E SSDD   SD D +DN+  D           + LKRS + K  
Sbjct: 138 NQPAIPLPASSSETETENSSDD---SDDDVEDNKTLD----------PMNLKRSETNKDD 197

Query: 185 CRSKSKGKGKSKKRPKIQVLS 203
             S+S G  KSKKRPKI  LS
Sbjct: 198 SLSESAGNKKSKKRPKIVELS 205

[Close]

BLAST of Cucsa.321360.2 vs. TrEMBL
Match: V4SAU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.9e-51
Identity = 118/201 (58.71%), Postives = 143/201 (71.14%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRVKDFL 64
           SKDLL+LE KD S+S++ES+LLVC K  T+   K P   + P   P  +S VLG+VK FL
Sbjct: 16  SKDLLHLEHKDSSASAIESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKVKGFL 75

Query: 65  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 124
           GVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAESAI G
Sbjct: 76  GVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAG 135

Query: 125 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTS 184
           N P IPL  SSSE+E+E SSDD   SD D +DN+  D           + LKRS + K  
Sbjct: 136 NQPAIPLPASSSETETENSSDD---SDDDVEDNKTLD----------PMNLKRSETNKDD 195

Query: 185 CRSKSKGKGKSKKRPKIQVLS 203
             S+S G  KSKKRPKI  LS
Sbjct: 196 SLSESAGNKKSKKRPKIVELS 203

[Close]

BLAST of Cucsa.321360.2 vs. TrEMBL
Match: W9QZQ7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003729 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.0e-49
Identity = 117/212 (55.19%), Postives = 142/212 (66.98%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTR-NEKPITEPASKSLVLGRVKD 60
           M + SKDLL+LE K+ S+SSLES+LLVCK +S  K  T+ +EKPIT P  +S VLG+VKD
Sbjct: 1   MGNTSKDLLHLEHKNPSASSLESALLVCKNDSQRKKETKPHEKPITAPIPQSQVLGKVKD 60

Query: 61  FLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAI 120
           FLGVISEANK L++D+K NAE YDIEAL G+ES+VI++DLMLGIADLHTPEAV AAESAI
Sbjct: 61  FLGVISEANKSLELDAKVNAENYDIEALTGDESQVIEMDLMLGIADLHTPEAVAAAESAI 120

Query: 121 IGNHPVIPLTCSSSESESE-------------ESSDDSITSDHDNDDNEKSDDQKTDCSN 180
            G  P IPL  SSSESES+             ES D S   +  N D+   D +  +C  
Sbjct: 121 SGYQPAIPLADSSSESESDSDPESDSNLDTDSESEDSSDKGETINGDDNDEDSENQNCKK 180

Query: 181 RLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKI 199
             S+K K S S K +   +     KS KRPKI
Sbjct: 181 LSSMKPKTSKSDKGNSSGEVTKNRKSSKRPKI 212

[Close]

BLAST of Cucsa.321360.2 vs. TAIR10
Match: AT1G71430.1 (AT1G71430.1 unknown protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 77/168 (45.83%), Postives = 107/168 (63.69%), Query Frame = 1


Query: 6   KDLLYLERKDLSSSS-LESSLLVCKKNSTSK---DPTRNEKPITEPASKSLVLGRVKDFL 65
           KDLL LE K+ SSSS ++S+LL+C   +  K   +     KP   P  KS +LG++K FL
Sbjct: 8   KDLLKLELKNPSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLKGFL 67

Query: 66  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 125
           GV++EANKK    S+ N E Y+IEAL GNESE+I++DLMLG+ADL+TPEAV+AAE+AI G
Sbjct: 68  GVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAAIAG 127

Query: 126 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS 170
             P          +ES +SS D    D  + ++E  + +  +CS + S
Sbjct: 128 IGPA---------AESGDSSSD----DESDSESEGEESKSAECSRKRS 158

[Close]

BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|778675227|ref|XP_004147238.2| (PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60
           MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120
           LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180
           GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 181 SCRSKSKGKGKSKKRPKIQVLS 203
           SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|778675224|ref|XP_011650372.1| (PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus])

HSP 1 Score: 388.7 bits (997), Expect = 6.5e-105
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60
           MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120
           VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180
           SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 203
           SRKTSCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SRKTSCRSKSKGKGKSKKRPKIQVLS 206

[Close]

BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|659095798|ref|XP_008448773.1| (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo])

HSP 1 Score: 374.0 bits (959), Expect = 1.6e-100
Identity = 191/202 (94.55%), Postives = 197/202 (97.52%), Query Frame = 1


Query: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60
           MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSK+P RNEKPITEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120
           LGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180
           GNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 181 SCRSKSKGKGKSKKRPKIQVLS 203
           SCRSKSKGKGKSKKRPKIQVLS
Sbjct: 181 SCRSKSKGKGKSKKRPKIQVLS 202

[Close]

BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|568867059|ref|XP_006486863.1| (PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-52
Identity = 119/201 (59.20%), Postives = 144/201 (71.64%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRVKDFL 64
           SKDLL+LE KD S+S++ES LLVC K  T+   K P   + P   P  +S VLG+VK FL
Sbjct: 5   SKDLLHLEHKDSSASAIESVLLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKVKGFL 64

Query: 65  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 124
           GVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAESAI G
Sbjct: 65  GVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAG 124

Query: 125 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTS 184
           N P IPL  SSSE+E+E+SSDDS  SD D +DN+  D           + LKRS + K  
Sbjct: 125 NQPAIPLPASSSETETEDSSDDSDDSDDDVEDNKTLD----------PMNLKRSETNKDD 184

Query: 185 CRSKSKGKGKSKKRPKIQVLS 203
             S+S G  KSKKRPKI  LS
Sbjct: 185 SLSESAGNKKSKKRPKIVELS 195

[Close]

BLAST of Cucsa.321360.2 vs. NCBI nr
Match: gi|567860092|ref|XP_006422700.1| (hypothetical protein CICLE_v10029331mg [Citrus clementina])

HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51
Identity = 118/201 (58.71%), Postives = 144/201 (71.64%), Query Frame = 1


Query: 5   SKDLLYLERKDLSSSSLESSLLVCKKNSTS---KDPTRNEKPITEPASKSLVLGRVKDFL 64
           SKDLL+LE KD S+S++ES+LLVC K  T+   K P   + P   P  +S VLG+VK FL
Sbjct: 5   SKDLLHLEHKDSSASAIESALLVCSKKDTNAELKKPNPGKMPSYGPVPRSQVLGKVKGFL 64

Query: 65  GVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAIIG 124
           GVISEANK+LQ+D+K+NA+ YD+EAL GNESEVI++DLMLGIADLHTPEAV+AAESAI G
Sbjct: 65  GVISEANKRLQLDAKDNAQDYDMEALTGNESEVIEMDLMLGIADLHTPEAVSAAESAIAG 124

Query: 125 NHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTS 184
           N P IPL  SSSE+E+E+SSDD   SD D +DN+  D           + LKRS + K  
Sbjct: 125 NQPAIPLPASSSETETEDSSDD---SDDDVEDNKTLD----------PMNLKRSETNKDD 184

Query: 185 CRSKSKGKGKSKKRPKIQVLS 203
             S+S G  KSKKRPKI  LS
Sbjct: 185 SLSESAGNKKSKKRPKIVELS 192

The following BLAST results are available for this feature:

BLAST of Cucsa.321360.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L448_CUCSA	8.2e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017130 PE=4 SV=1	[more]
V4S6C7_9ROSI	2.9e-51	58.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029331mg PE=4 SV=1	[more]
V4U9K2_9ROSI	4.9e-51	58.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
V4SAU0_9ROSI	4.9e-51	58.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029295mg PE=4 SV=1	[more]
W9QZQ7_9ROSA	6.0e-49	55.19	Uncharacterized protein OS=Morus notabilis GN=L484_003729 PE=4 SV=1	[more]

BLAST of Cucsa.321360.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71430.1	1.4e-28	45.83	unknown protein	[more]

BLAST of Cucsa.321360.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675227\|ref\|XP_004147238.2\|	1.2e-106	100.00	PREDICTED: uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]	[more]
gi\|778675224\|ref\|XP_011650372.1\|	6.5e-105	98.06	PREDICTED: uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]	[more]
gi\|659095798\|ref\|XP_008448773.1\|	1.6e-100	94.55	PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]	[more]
gi\|568867059\|ref\|XP_006486863.1\|	2.2e-52	59.20	PREDICTED: uncharacterized protein LOC102616713 [Citrus sinensis]	[more]
gi\|567860092\|ref\|XP_006422700.1\|	4.1e-51	58.71	hypothetical protein CICLE_v10029331mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027921	DUF4598

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.321360	Cucsa.321360	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.321360.2	Cucsa.321360.2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.321360.2.CDS.5	Cucsa.321360.2.CDS.5	CDS
Cucsa.321360.2.CDS.4	Cucsa.321360.2.CDS.4	CDS
Cucsa.321360.2.CDS.3	Cucsa.321360.2.CDS.3	CDS
Cucsa.321360.2.CDS.2	Cucsa.321360.2.CDS.2	CDS
Cucsa.321360.2.CDS.1	Cucsa.321360.2.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.321360.2.three_prime_UTR.1	Cucsa.321360.2.three_prime_UTR.1	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.321360.2.five_prime_UTR.2	Cucsa.321360.2.five_prime_UTR.2	five_prime_UTR
Cucsa.321360.2.five_prime_UTR.1	Cucsa.321360.2.five_prime_UTR.1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027921	Protein of unknown function DUF4598	PFAM	PF15370	DUF4598	coord: 54..199 score: 1.0
None	No IPR available	PANTHER	PTHR28674	FAMILY NOT NAMED	coord: 1..145 score: 9.7E-46coord: 177..202 score: 9.7