Cucsa.312200 (gene) Cucumber (Gy14) v1

NameCucsa.312200
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionHydroxyproline-rich glycoprotein
Locationscaffold02995 : 1689830 .. 1690494 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTGGGAGTGGAAATGAAGAAAAGAAATTGAAATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTtGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCcGATAAaGTTTCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTTGTTTTCTTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAACAACCAGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTTAATTAATTAAATACTGCTTTTTTTTTtCTTCTTTTTAATTATAAGGTTTTTGTGCATATATATTATATTACAATATATAGATGTGCATTTGAATATTCCTTTGGAA

mRNA sequence

GGTTGGGAGTGGAAATGAAGAAAAGAAATTGAAATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTTAATTAATTAAATACTGCTTTTTTTTTTCTTCTTTTTAATTATAAGGTTTTTGTGCATATATATTATATTACAATATATAGATGTGCATTTGAATATTCCTTTGGAA

Coding sequence (CDS)

ATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTtGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCcGATAAaGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Protein sequence

MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP*
BLAST of Cucsa.312200 vs. Swiss-Prot
Match: Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1

Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

BLAST of Cucsa.312200 vs. TrEMBL
Match: A0A0A0LE40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

BLAST of Cucsa.312200 vs. TrEMBL
Match: V7AVS6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-19
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1

Query: 17  ASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAP 76
           AS++FP+GL LL+  L   CCFFCCCLHWEKLR F      +   H HH P     +P P
Sbjct: 10  ASIAFPLGLALLVALLLFFCCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPP 69

Query: 77  DKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            K      + K+NR +S  VLMPGDEVP+FIA+ACP
Sbjct: 70  HKPGFPVLMVKQNRGESFPVLMPGDEVPKFIALACP 105

BLAST of Cucsa.312200 vs. TrEMBL
Match: U5GPZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-19
Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 1

Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVS 77
           SL FPVGLVLLL  LF M   F CCLHWEK+ S LG     +H H  I +     P K S
Sbjct: 10  SLGFPVGLVLLLFMLFIMSGLFSCCLHWEKVLSLLGVSSEDNHSH--IEEDVEHLPQKSS 69

Query: 78  PIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA------LVEIVVQKP 120
           P H   K N+ QS+ VLMPGD+VP+FIAMACP        + + +QKP
Sbjct: 70  PPHVKLKRNQGQSLPVLMPGDQVPKFIAMACPCEPPRTEKITVQIQKP 115

BLAST of Cucsa.312200 vs. TrEMBL
Match: A0A0L9UFX4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g201800 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 1

Query: 12  EAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH---LHHHHPPIPQP 71
           +A   AS++FP+GL LL+  LF  C FFCCCLHWEKLR F            HHP    P
Sbjct: 5   DASSGASIAFPLGLALLIAVLFFFCTFFCCCLHWEKLRPFFPFSSRNITTLPHHP--LTP 64

Query: 72  QSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            +P P K      + K+N  +S  VLMPGDEVP+FIA+ACP
Sbjct: 65  ITPPPHKPGFPVLMMKQNSGESFPVLMPGDEVPKFIALACP 103

BLAST of Cucsa.312200 vs. TrEMBL
Match: A0A0S3RCH2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G108200 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 1

Query: 12  EAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH---LHHHHPPIPQP 71
           +A   AS++FP+GL LL+  LF  C FFCCCLHWEKLR F            HHP    P
Sbjct: 5   DASSGASIAFPLGLALLIAVLFFFCTFFCCCLHWEKLRPFFPFSSRNITTLPHHP--LTP 64

Query: 72  QSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            +P P K      + K+N  +S  VLMPGDEVP+FIA+ACP
Sbjct: 65  ITPPPHKPGFPVLMMKQNSGESFPVLMPGDEVPKFIALACP 103

BLAST of Cucsa.312200 vs. TAIR10
Match: AT5G65660.1 (AT5G65660.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-12
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1

Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

BLAST of Cucsa.312200 vs. NCBI nr
Match: gi|778687646|ref|XP_011652602.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 7.7e-72
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1

Query: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60
           MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH
Sbjct: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60

Query: 61  HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS 120
           HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS
Sbjct: 61  HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS 120

Query: 121 QSISDNP 128
           QSISDNP
Sbjct: 121 QSISDNP 127

BLAST of Cucsa.312200 vs. NCBI nr
Match: gi|449436926|ref|XP_004136243.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 1.9e-70
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1

Query: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60
           MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH
Sbjct: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60

Query: 61  HHPPIPQPQSPAPDKVSPIHS-IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP 120
           HHPPIPQPQSPAPDKVSPIHS IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP
Sbjct: 61  HHPPIPQPQSPAPDKVSPIHSKIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP 120

Query: 121 SQSISDNP 128
           SQSISDNP
Sbjct: 121 SQSISDNP 128

BLAST of Cucsa.312200 vs. NCBI nr
Match: gi|659132273|ref|XP_008466113.1| (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-61
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 1

Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA----PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 125
           P P SPA    PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 126 VVQKPSQSISDN 127
           VVQKPSQSISD+
Sbjct: 121 VVQKPSQSISDS 132

BLAST of Cucsa.312200 vs. NCBI nr
Match: gi|700205157|gb|KGN60290.1| (hypothetical protein Csa_3G893400 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

Query: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

BLAST of Cucsa.312200 vs. NCBI nr
Match: gi|593328486|ref|XP_007137670.1| (hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris])

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-19
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1

Query: 17  ASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAP 76
           AS++FP+GL LL+  L   CCFFCCCLHWEKLR F      +   H HH P     +P P
Sbjct: 10  ASIAFPLGLALLVALLLFFCCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPP 69

Query: 77  DKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            K      + K+NR +S  VLMPGDEVP+FIA+ACP
Sbjct: 70  HKPGFPVLMVKQNRGESFPVLMPGDEVPKFIALACP 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y5566_ARATH1.3e-1037.93Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LE40_CUCSA1.4e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1[more]
V7AVS6_PHAVU1.4e-1952.08Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1[more]
U5GPZ9_POPTR6.9e-1950.93Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1[more]
A0A0L9UFX4_PHAAN2.2e-1749.50Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g201800 PE=4 SV=1[more]
A0A0S3RCH2_PHAAN2.2e-1749.50Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G108200 PE=... [more]
Match NameE-valueIdentityDescription
AT5G65660.17.3e-1237.93 hydroxyproline-rich glycoprotein family protein[more]
Match NameE-valueIdentityDescription
gi|778687646|ref|XP_011652602.1|7.7e-72100.00PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus][more]
gi|449436926|ref|XP_004136243.1|1.9e-7099.22PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus][more]
gi|659132273|ref|XP_008466113.1|4.7e-6187.12PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo][more]
gi|700205157|gb|KGN60290.1|2.0e-51100.00hypothetical protein Csa_3G893400 [Cucumis sativus][more]
gi|593328486|ref|XP_007137670.1|2.0e-1952.08hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.312200.1Cucsa.312200.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34291FAMILY NOT NAMEDcoord: 18..127
score: 8.2

The following gene(s) are paralogous to this gene:

None