Carg03021 (gene) Silver-seed gourd

NameCarg03021
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHydroxyproline-rich glycoprotein family protein
LocationCucurbita_argyrosperma_scaffold_008 : 1401839 .. 1402617 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAATAAAATATTTTTGTGCATAAATTGAATTGTCATCAACAAATCTGCAGAATTTGATCGGAGGAAGATCGAGAGATACAAGAAATGGAGTACGATGACCGCGAAGCACAGGATTCCGCCTCTCTGAGTTTTCCAGTTGGTTTGGTTCTTTTGTTGACGTTTTTGTTCTGCATGTGTTGTTTCTTTTCTTGTTGTCTTCACTGGGAAAAGCTCCGATCAATTCTCGGCTGTCCCGATCACGCCGACCACCGTCATCCTTCTATTCCGCCGGAAACCCCCGCCTTTTCGCCGCCTGATAAATTCTCCCCAATCCATACGGTGCGTTTTGCTCCTTCTACTTCTTGTTTAGCTAGTCCATACGGTGCGTTTTGTTCCGCCGGAGAATTATTTATTTATTTTTTATTTTTTTAAACTGAGAATTTAAATATCGAATAAATATATATTTTTTTTTTTTGATGTTTCCTTTATATCTTTTTTTTTTTTTCTAAATAAAAGATATGGAAGGAGAATCGGCCGGAAAGTCTGACGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGGGGCGGCGCCGTTGGTAGAAATTGTAATACAGAAACCTTCTCAGAGTATTTCTGAAGCTCTCCCTTCAAATTAATGTCGTTTTTGTTCATATGAATTTGAATATTCCATTATTCCTTTGGAATTTGTAGCAATGTTCAAATATTTCTCTTAATTAATTCCTAATATGTACATGGAGAAATTCTGTTTTTGG

mRNA sequence

TAAAATAAAATATTTTTGTGCATAAATTGAATTGTCATCAACAAATCTGCAGAATTTGATCGGAGGAAGATCGAGAGATACAAGAAATGGAGTACGATGACCGCGAAGCACAGGATTCCGCCTCTCTGAGTTTTCCAGTTGGTTTGGTTCTTTTGTTGACGTTTTTGTTCTGCATGTGTTGTTTCTTTTCTTGTTGTCTTCACTGGGAAAAGCTCCGATCAATTCTCGGCTGTCCCGATCACGCCGACCACCGTCATCCTTCTATTCCGCCGGAAACCCCCGCCTTTTCGCCGCCTGATAAATTCTCCCCAATCCATACGATATGGAAGGAGAATCGGCCGGAAAGTCTGACGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGGGGCGGCGCCGTTGGTAGAAATTGTAATACAGAAACCTTCTCAGAGTATTTCTGAAGCTCTCCCTTCAAATTAATGTCGTTTTTGTTCATATGAATTTGAATATTCCATTATTCCTTTGGAATTTGTAGCAATGTTCAAATATTTCTCTTAATTAATTCCTAATATGTACATGGAGAAATTCTGTTTTTGG

Coding sequence (CDS)

ATGGAGTACGATGACCGCGAAGCACAGGATTCCGCCTCTCTGAGTTTTCCAGTTGGTTTGGTTCTTTTGTTGACGTTTTTGTTCTGCATGTGTTGTTTCTTTTCTTGTTGTCTTCACTGGGAAAAGCTCCGATCAATTCTCGGCTGTCCCGATCACGCCGACCACCGTCATCCTTCTATTCCGCCGGAAACCCCCGCCTTTTCGCCGCCTGATAAATTCTCCCCAATCCATACGATATGGAAGGAGAATCGGCCGGAAAGTCTGACGGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCATGTCCGCCGTGTGGGGCGGCGCCGTTGGTAGAAATTGTAATACAGAAACCTTCTCAGAGTATTTCTGAAGCTCTCCCTTCAAATTAA

Protein sequence

MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQKPSQSISEALPSN
BLAST of Carg03021 vs. NCBI nr
Match: XP_022936981.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 2.0e-71
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60
           MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120
           PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120

Query: 121 PSQSISEALPSN 133
           PSQSIS ALPSN
Sbjct: 121 PSQSISGALPSN 132

BLAST of Carg03021 vs. NCBI nr
Match: XP_022975977.1 (uncharacterized protein At5g65660-like [Cucurbita maxima])

HSP 1 Score: 273.9 bits (699), Expect = 2.9e-70
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60
           MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDH+DH HPSI
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120
           PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120

Query: 121 PSQSISEALPSN 133
           PSQSIS ALPSN
Sbjct: 121 PSQSISGALPSN 132

BLAST of Carg03021 vs. NCBI nr
Match: XP_023536259.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-69
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60
           MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120
           PPETPAFSPPDKFSPIHTIWKENRP SLTVLMPGDEVPRFIAMACPPC AAPLVEIVIQK
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPASLTVLMPGDEVPRFIAMACPPCVAAPLVEIVIQK 120

Query: 121 PSQSISEALPSN 133
           PSQSIS ALPSN
Sbjct: 121 PSQSISVALPSN 132

BLAST of Carg03021 vs. NCBI nr
Match: XP_008466113.1 (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 94/132 (71.21%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPD--HADHRHP 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCM       LHWEKLRS LGCPD  H      
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMXXXXXXXLHWEKLRSFLGCPDHLHXXXXXX 60

Query: 61  SIPPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPC--GAAPLVEI 120
                    SPPDKFSPIHTIWKENRP+S++VLMPGDEVPRFIA+ACPPC   AA LVEI
Sbjct: 61  XXXXXXXXLSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 121 VIQKPSQSISEA 129
           V+QKPSQSIS++
Sbjct: 121 VVQKPSQSISDS 132

BLAST of Carg03021 vs. NCBI nr
Match: XP_022981076.1 (uncharacterized protein At5g65660-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 88/128 (68.75%), Postives = 99/128 (77.34%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60
           MEYD  EAQD   LS PVGLVLL TFL CMCCFFSCCLHWEKLRS++G      HR+P +
Sbjct: 1   MEYDYGEAQDPVPLSLPVGLVLLFTFLLCMCCFFSCCLHWEKLRSLIG------HRYPPL 60

Query: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQK 120
            P   AFSPPDK SP+HTIWKE   +SL+VLMPGDEVPRFIAMACPPC AA LV +  QK
Sbjct: 61  LPVNTAFSPPDKISPVHTIWKETPAQSLSVLMPGDEVPRFIAMACPPCAAA-LVVVEEQK 120

Query: 121 PSQSISEA 129
           PS+SI ++
Sbjct: 121 PSRSIPDS 121

BLAST of Carg03021 vs. TAIR10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-11
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPETPAFSPPDK 72
           SL FP+G  LLL  +F +   FSCC HW+K RS+        +  PS   E+  + P   
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL---RRSLANGRPSADIESNPYKPKPP 77

Query: 73  FSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAP-LVEIVIQKPSQS 125
           F  +    K+ +  S+ VLMPGD  P+FIA+ CP     P  + + +Q P QS
Sbjct: 78  FPEM----KKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

BLAST of Carg03021 vs. Swiss-Prot
Match: sp|Q9LSK9|Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.8e-10
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 0

Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPETPAFSPPDK 72
           SL FP+G  LLL  +F +   FSCC HW+K RS+        +  PS   E+  + P   
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL---RRSLANGRPSADIESNPYKPKPP 77

Query: 73  FSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAP-LVEIVIQKPSQS 125
           F  +    K+ +  S+ VLMPGD  P+FIA+ CP     P  + + +Q P QS
Sbjct: 78  FPEM----KKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

BLAST of Carg03021 vs. TrEMBL
Match: tr|A0A1S3CQS4|A0A1S3CQS4_CUCME (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.7e-43
Identity = 94/132 (71.21%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPD--HADHRHP 60
           MEYD+REAQD ASLSFPVGLVLLLTFLFCM       LHWEKLRS LGCPD  H      
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMXXXXXXXLHWEKLRSFLGCPDHLHXXXXXX 60

Query: 61  SIPPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPC--GAAPLVEI 120
                    SPPDKFSPIHTIWKENRP+S++VLMPGDEVPRFIA+ACPPC   AA LVEI
Sbjct: 61  XXXXXXXXLSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 121 VIQKPSQSISEA 129
           V+QKPSQSIS++
Sbjct: 121 VVQKPSQSISDS 132

BLAST of Carg03021 vs. TrEMBL
Match: tr|A0A0A0LE40|A0A0A0LE40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 30  MCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPETPAFSP-PDKFSPIHTIWKENRPESL 89
           MCCFF CCLHWEKLRS LGCPDH    H          SP PDK SPIH+IWKENRP+S+
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHL---HXXXXXXXXXXSPAPDKVSPIHSIWKENRPQSV 60

Query: 90  TVLMPGDEVPRFIAMACPPCGAAPLVEIVIQKPSQSISE 128
           +VLMPGDEVPRFIAMACP      LVEIV+QKPSQSIS+
Sbjct: 61  SVLMPGDEVPRFIAMACP-----ALVEIVVQKPSQSISD 91

BLAST of Carg03021 vs. TrEMBL
Match: tr|U5GPZ9|U5GPZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G108100v3 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-17
Identity = 57/110 (51.82%), Postives = 66/110 (60.00%), Query Frame = 0

Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPETPAFSPPDK 72
           SL FPVGLVLLL  LF M   FSCCLHWEK+ S+LG     +H H     E      P K
Sbjct: 10  SLGFPVGLVLLLFMLFIMSGLFSCCLHWEKVLSLLGVSSEDNHSH----IEEDVEHLPQK 69

Query: 73  FSPIHTIWKENRPESLTVLMPGDEVPRFIAMACP-PCGAAPLVEIVIQKP 122
            SP H   K N+ +SL VLMPGD+VP+FIAMACP        + + IQKP
Sbjct: 70  SSPPHVKLKRNQGQSLPVLMPGDQVPKFIAMACPCEPPRTEKITVQIQKP 115

BLAST of Carg03021 vs. TrEMBL
Match: tr|A0A2P2PJZ3|A0A2P2PJZ3_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 0

Query: 5   DREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSIPPET 64
           D E     S+ FP+GL LLL  LF M   F+CCLHW+KLRS+LG     D    +  PE 
Sbjct: 2   DDEESARPSIGFPLGLSLLLFMLFSMSMLFTCCLHWDKLRSLLGFSSDGD----AHVPEA 61

Query: 65  PAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQKPSQ 124
            A   P K S    I K+N  +SL VLMPGD+VP+FIAMACP       + + +QK  Q
Sbjct: 62  DAVHVPQK-SASPRISKQNPAQSLPVLMPGDQVPKFIAMACPSEPRRLNIIVELQKSPQ 115

BLAST of Carg03021 vs. TrEMBL
Match: tr|A0A2C9VXN7|A0A2C9VXN7_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G187200 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 53/119 (44.54%), Postives = 66/119 (55.46%), Query Frame = 0

Query: 5   DREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILG-CPDHADHRHPSIPPE 64
           + E     S+ FP+GL LLL  L  M  FF+CCL+W+KLRS+LG   +   H     PP+
Sbjct: 2   ENEESTRPSIGFPLGLALLLVMLLFMAGFFTCCLYWDKLRSLLGVSSEEISHAQKPTPPQ 61

Query: 65  TPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAP-LVEIVIQKP 122
             +              K NR ESL VLMPGD+VPRFIAMACP     P  + I +QKP
Sbjct: 62  EES--------------KRNRAESLPVLMPGDQVPRFIAMACPCKPPLPEKITIKVQKP 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022936981.12.0e-7199.24uncharacterized protein At5g65660-like [Cucurbita moschata][more]
XP_022975977.12.9e-7097.73uncharacterized protein At5g65660-like [Cucurbita maxima][more]
XP_023536259.11.1e-6997.73uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo][more]
XP_008466113.11.2e-4271.21PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo][more]
XP_022981076.11.7e-4168.75uncharacterized protein At5g65660-like isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G65660.14.9e-1137.17hydroxyproline-rich glycoprotein family protein[more]
Match NameE-valueIdentityDescription
sp|Q9LSK9|Y5566_ARATH8.8e-1037.17Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CQS4|A0A1S3CQS4_CUCME7.7e-4371.21uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P... [more]
tr|A0A0A0LE40|A0A0A0LE40_CUCSA3.7e-2969.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1[more]
tr|U5GPZ9|U5GPZ9_POPTR2.5e-1751.82Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G108100v3 PE=... [more]
tr|A0A2P2PJZ3|A0A2P2PJZ3_RHIMU3.0e-1546.22Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2C9VXN7|A0A2C9VXN7_MANES3.0e-1544.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G187200 PE=4 SV=... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037699At5g65660-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03021-RACarg03021-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037699Uncharacterized protein At5g65660-likePANTHERPTHR34291FAMILY NOT NAMEDcoord: 12..118

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg03021Carg00744Silver-seed gourdcarcarB424
Carg03021Carg00410Silver-seed gourdcarcarB554