Csa3G893400 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G893400
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Hydroxyproline-rich glycoprotein
Location	Chr3 : 38318794 .. 38319241 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTTGTTTTCTTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAACAACCAGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTTAATTAATTAAATACTG

mRNA sequence

ATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Coding sequence (CDS)

ATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Protein sequence

MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP*

Homology

[Close]

BLAST of Csa3G893400 vs. Swiss-Prot
Match: Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-06
Identity = 35/95 (36.84%), Postives = 42/95 (44.21%), Query Frame = 1


Query: 5   FCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSV 64
           F CC HW+K RS       G P      +P  P+P  P P+   P        +  SV V
Sbjct: 39  FSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PFPEMKKP--------QNLSVPV 98

Query: 65  LMPGDEVPRFIAMACPAL------VEIVVQKPSQS 89
           LMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 99  LMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of Csa3G893400 vs. TrEMBL
Match: A0A0A0LE40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60
          MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 61 MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 94
          MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61 MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]

BLAST of Csa3G893400 vs. TrEMBL
Match: V7AVS6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-14
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 2   CCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVS 61
           CCFFCCCLHWEKLR F      +   H HH P     +P P K      + K+NR +S  
Sbjct: 29  CCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPPHKPGFPVLMVKQNRGESFP 88

Query: 62  VLMPGDEVPRFIAMACP 76
           VLMPGDEVP+FIA+ACP
Sbjct: 89  VLMPGDEVPKFIALACP 105

[Close]

BLAST of Csa3G893400 vs. TrEMBL
Match: A0A151RUP1_CAJCA (Uncharacterized protein At5g65660 family OS=Cajanus cajan GN=KK1_032191 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = 1


Query: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60
           MCCFFCCCLHWEKL+        ++ H P  P   +P   K      + K    +S+ VL
Sbjct: 28  MCCFFCCCLHWEKLQPMFPFSGVINTHDPHTPPHLTPPHHKPGFPVLMLKHKGGESLPVL 87

Query: 61  MPGDEVPRFIAMACPA------LVEIVVQKPSQS 89
           MPGDEVPRFIA+ACP        + I VQK S +
Sbjct: 88  MPGDEVPRFIALACPCQPPTNERITIHVQKASSN 121

[Close]

BLAST of Csa3G893400 vs. TrEMBL
Match: U5GPZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60
           M   F CCLHWEK+ S LG     +H H  I +     P K SP H   K N+ QS+ VL
Sbjct: 27  MSGLFSCCLHWEKVLSLLGVSSEDNHSH--IEEDVEHLPQKSSPPHVKLKRNQGQSLPVL 86

Query: 61  MPGDEVPRFIAMACPA------LVEIVVQKP 86
           MPGD+VP+FIAMACP        + + +QKP
Sbjct: 87  MPGDQVPKFIAMACPCEPPRTEKITVQIQKP 115

[Close]

BLAST of Csa3G893400 vs. TrEMBL
Match: A0A0B2PIN6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021857 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 2   CCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLM 61
           CCFFCCCLHWEKL+        +    P      +P P K      + + NR +S+ VLM
Sbjct: 29  CCFFCCCLHWEKLQPLFPFCMVIVDTQPQTQADFTPPPHKPGFPVLMMQHNRGESLPVLM 88

Query: 62  PGDEVPRFIAMACPA------LVEIVVQK 85
           PGDEVP+FIA+ACP       ++ I VQK
Sbjct: 89  PGDEVPKFIALACPCQPPTNEMITIHVQK 117

[Close]

BLAST of Csa3G893400 vs. TAIR10
Match: AT5G65660.1 (AT5G65660.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-07
Identity = 35/95 (36.84%), Postives = 42/95 (44.21%), Query Frame = 1


Query: 5   FCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSV 64
           F CC HW+K RS       G P      +P  P+P  P P+   P        +  SV V
Sbjct: 39  FSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PFPEMKKP--------QNLSVPV 98

Query: 65  LMPGDEVPRFIAMACPAL------VEIVVQKPSQS 89
           LMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 99  LMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of Csa3G893400 vs. NCBI nr
Match: gi|778687646|ref|XP_011652602.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94

Query: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 94
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 127

[Close]

BLAST of Csa3G893400 vs. NCBI nr
Match: gi|700205157|gb|KGN60290.1| (hypothetical protein Csa_3G893400 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60
          MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 61 MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 94
          MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61 MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]

BLAST of Csa3G893400 vs. NCBI nr
Match: gi|449436926|ref|XP_004136243.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-50
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 1


Query: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHS-IWKENRPQSVSV 60
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHS IWKENRPQSVSV
Sbjct: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSKIWKENRPQSVSV 94

Query: 61  LMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 94
           LMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 95  LMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128

[Close]

BLAST of Csa3G893400 vs. NCBI nr
Match: gi|659132273|ref|XP_008466113.1| (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 8.6e-44
Identity = 86/103 (83.50%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPA----PDKVSPIHSIWKENRPQS 60
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIP P SPA    PDK SPIH+IWKENRPQS
Sbjct: 30  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPPPHSPAALSPPDKFSPIHTIWKENRPQS 89

Query: 61  VSVLMPGDEVPRFIAMACP-------ALVEIVVQKPSQSISDN 93
           VSVLMPGDEVPRFIA+ACP       ALVEIVVQKPSQSISD+
Sbjct: 90  VSVLMPGDEVPRFIALACPPCATAAAALVEIVVQKPSQSISDS 132

[Close]

BLAST of Csa3G893400 vs. NCBI nr
Match: gi|593328486|ref|XP_007137670.1| (hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris])

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-14
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 2   CCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVS 61
           CCFFCCCLHWEKLR F      +   H HH P     +P P K      + K+NR +S  
Sbjct: 29  CCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPPHKPGFPVLMVKQNRGESFP 88

Query: 62  VLMPGDEVPRFIAMACP 76
           VLMPGDEVP+FIA+ACP
Sbjct: 89  VLMPGDEVPKFIALACP 105

The following BLAST results are available for this feature:

BLAST of Csa3G893400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5566_ARATH	9.2e-06	36.84	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1	[more]

BLAST of Csa3G893400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE40_CUCSA	1.0e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1	[more]
V7AVS6_PHAVU	2.2e-14	53.25	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1	[more]
A0A151RUP1_CAJCA	1.6e-12	44.68	Uncharacterized protein At5g65660 family OS=Cajanus cajan GN=KK1_032191 PE=4 SV=...	[more]
U5GPZ9_POPTR	2.7e-12	46.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1	[more]
A0A0B2PIN6_GLYSO	3.9e-11	43.82	Uncharacterized protein OS=Glycine soja GN=glysoja_021857 PE=4 SV=1	[more]

BLAST of Csa3G893400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65660.1	5.2e-07	36.84	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Csa3G893400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778687646\|ref\|XP_011652602.1\|	1.5e-51	100.00	PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus]	[more]
gi\|700205157\|gb\|KGN60290.1\|	1.5e-51	100.00	hypothetical protein Csa_3G893400 [Cucumis sativus]	[more]
gi\|449436926\|ref\|XP_004136243.1\|	3.6e-50	98.94	PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus]	[more]
gi\|659132273\|ref\|XP_008466113.1\|	8.6e-44	83.50	PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo]	[more]
gi\|593328486\|ref\|XP_007137670.1\|	3.2e-14	53.25	hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU147663	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G893400.1	Csa3G893400.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU147663	CU147663	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34291	FAMILY NOT NAMED	coord: 1..93 score: 1.5
None	No IPR available	PANTHER	PTHR34291:SF1	SUBFAMILY NOT NAMED	coord: 1..93 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G893400	ClCG11G014840	Watermelon (Charleston Gray)	cuwcgB199
Csa3G893400	Lsi04G023010	Bottle gourd (USVL1VR-Ls)	culsiB191
Csa3G893400	Cla97C11G220840	Watermelon (97103) v2	cuwmbB191
Csa3G893400	Bhi09G002142	Wax gourd	cuwgoB340
Csa3G893400	CSPI03G45800	Wild cucumber (PI 183967)	cpicuB120
Csa3G893400	Cucsa.312200	Cucumber (Gy14) v1	cgycuB450
Csa3G893400	CmaCh01G014600	Cucurbita maxima (Rimu)	cmacuB454
Csa3G893400	CmaCh09G006070	Cucurbita maxima (Rimu)	cmacuB014
Csa3G893400	CmoCh01G015120	Cucurbita moschata (Rifu)	cmocuB441
Csa3G893400	CmoCh09G005950	Cucurbita moschata (Rifu)	cmocuB005
Csa3G893400	Cp4.1LG02g03810	Cucurbita pepo (Zucchini)	cpecuB546
Csa3G893400	Cp4.1LG06g03930	Cucurbita pepo (Zucchini)	cpecuB776
Csa3G893400	CsGy3G043280	Cucumber (Gy14) v2	cgybcuB110
Csa3G893400	Carg00744	Silver-seed gourd	carcuB0437
Csa3G893400	Carg03021	Silver-seed gourd	carcuB0655
Csa3G893400	Carg00410	Silver-seed gourd	carcuB0685

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G893400	Cucumber (Chinese Long) v2	cucuB122
Csa3G893400	Cucumber (Gy14) v1	cgycuB119
Csa3G893400	Cucurbita maxima (Rimu)	cmacuB180
Csa3G893400	Cucurbita maxima (Rimu)	cmacuB796
Csa3G893400	Cucurbita moschata (Rifu)	cmocuB164
Csa3G893400	Melon (DHL92) v3.5.1	cumeB206
Csa3G893400	Melon (DHL92) v3.5.1	cumeB222
Csa3G893400	Melon (DHL92) v3.5.1	cumeB263
Csa3G893400	Watermelon (Charleston Gray)	cuwcgB210
Csa3G893400	Watermelon (Charleston Gray)	cuwcgB262
Csa3G893400	Watermelon (97103) v1	cuwmB209
Csa3G893400	Watermelon (97103) v1	cuwmB264
Csa3G893400	Watermelon (97103) v1	cuwmB271
Csa3G893400	Cucurbita pepo (Zucchini)	cpecuB111
Csa3G893400	Cucurbita pepo (Zucchini)	cpecuB827
Csa3G893400	Bottle gourd (USVL1VR-Ls)	culsiB166
Csa3G893400	Bottle gourd (USVL1VR-Ls)	culsiB239
Csa3G893400	Cucumber (Gy14) v2	cgybcuB265
Csa3G893400	Melon (DHL92) v3.6.1	cumedB208
Csa3G893400	Melon (DHL92) v3.6.1	cumedB253
Csa3G893400	Silver-seed gourd	carcuB0061
Csa3G893400	Silver-seed gourd	carcuB0837
Csa3G893400	Watermelon (97103) v2	cuwmbB180