Cucsa.244520 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.244520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCystathionine beta-synthase (CBS) family protein
Locationscaffold02135 : 378077 .. 380404 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGGGATTTTTCTCTCCATTAAAACGCCTTTTTTtCTCTTGGAAAAGTGTTCTTGTTTCCTATCCTTACACGGATCGGAAGCTAATTACAACCTAATTCTCCGATTCCACCTTCACTCTGAAAATTTCCCGGTTGTATTTCTCTTCCGTTCGCTGGATCAGCCATTGATTCGTTTGAATTTCTCTGTTACTCCTCAATCATCTAGCAAAATGAGCTCCATCTCTCTCTCCAATTCACATCCTCTTGCGCGCCCTTATCCTCATCATCTTCCTCACTCTCACCGTCAACAATGGTGCTCCCGCCCTCTGCTTTCGACCAATTCTCTTTCTAAGCTACACCGGTTTGGGATCTCCGACCGATTCCCCGCTCGACCTCCCTTGCCTTTGGTTCTTGCTTCTTCTGGAGCTGGCGTCGTTGATTCCTTTCCGGTTTGTCATTTCCTTCTCATATTCTTTGTTCTATTCACAACTTAATCACGATTATGTTTTTGTTTTtAGTTTATTTACTGCAAGCCGCACTCTAATTGCTGACCTACCGTTATGTAGTGAATTAGGCGATATCTCTACTCTTCACTAAGATTTGTATGTCTGTGTTCTACCTACGTGAATAAGTATGGACATAACCGCCAAAATATGCTTTCATTTCGGCTGTTAAGTAATATAGAGATTATACTTTTCCTTCACGACGATTCATCCGTGGAAAAGAACCTGTACCGTCTACGATTATGCTGCATAATTTTAGAATGGAGCATAGAACTAAAGCAGACGCTCGAAAGTGCTTATAAACAATTATCGATTTGGTCCTATTGGTGCTACTATGTATAATATAAGCTATATGTTATGTTTATTATATGTTTTGTTTTAGAGAGGGAGAGTTTGGGGAATTGACTTGTTTATGGCTATTTTAGACCTGATGTTTTAAATTTCTGTTTGACGGCTTGGCTGTCGTGTTTTGCTCTTATTTCTATCATGATGATTTTCAGCTCAGAGGAACATATACGGTTGGTGATTTTATGACGAGAAAGGAGAATCTATATGTTGTTAAACCTACAACAACAGTTGATGAAGGTGCGGTTGATTGAGGGACTAAATTTCAATTGTTTTGGTTAGAGTTGCTAATGCTAATTGGTTCTTTCATCGGCTTTTGTGCTTACAGCATTAGAGGTCTTGGTGGAAAAGAGAATAACTGGCTTTCCTGTTGTCGATGATGATTGGAATCTGGTAGAGTCTTTCTTTTCACCTTTTTGTGCTCCTTGCGCGTTTTTTTTtATATTTCCTCTGTCAACTTACTATGGAAGTGAATTACCAAAGTCCGATGATATTCTTGTGGAAGGGACTGGGGAAGGGGTCTTCTCTTTGTCCTCAGTTTCGCTGAGGATTTTGCAAAAATTATCAACATTATTTTTtCTTTCGTTTTTTTGAGGATTTGGGGTGCACTTGTGCATCTATGGTCAAAGCCTTACCCTTAAGTCAGGCCAGGAATTTTGGTCCATTTATATTAAGGGTACGGCTAGCAAAGAATCCAAAGTGCTACTCTTCTTTCTTAATAATTTGGCTTGTGTTTTGCTGTTGCAGGTTGGAGTTGTCTCAGATTATGACTTATTAGCACTTGATTCCATTTCAGGTATTTTCACTTCCCATAGCCCGGGTTTCAACTGAAATCACCATTACACGAGGAATTGTTCTTTGCTTATTTTTCTGTTGAAATTGGATTTCTTTCCTTTTTCATTTGTTAAATTACTAGTCTTTTTTTTtATTCTTCTTATTTTAATTCCTAAATTTGAGATGCTTCTTCAATTTTGCTTTCTTATTTAGTTTCCAATTGGGAAACTTTATTGTAATCACCCATGGGTGCTTGGGGTCTTCTCTTATTTCATTTTATCAATGAAATATTTCTTCTCTAAAAATATTATTTTTtGTTATAATCCATTTAAATCATTGCTTCTCTTAATAATATTTCCCCCCTATTATTGGCAATTAGGTGGTACTCAGAGTGATACCAATCTGTTTCCTGATGTGGATAGTTCGTGGAAAGTATGTAAGCAGTGCCATTTATCTTCTGGTTATTTGCCCTCTTTTTTTTTTTtCACAAACATGAGGATTTTTAACAAAAACACCCTCAGAAAACGTGATCAATCCACTGTTTGGATTGGTTTTCAGCTGTGTGAACCCAAATCAGCAGAAAGTTTTGTTTTGTTTTTTGTTTTAAATAATTTTTTTACTCCAGAATATTGTTCTCAGACCCTTTTGGAAAGTACTCCAAAATATTGTTTGATTGATCTTTGGAGTACTCATTTTCAAAAAaTGAAATATTTATTGATACATTGA

mRNA sequence

ACGGGGATTTTTCTCTCCATTAAAACGCCTTTTTTTCTCTTGGAAAAGTGTTCTTGTTTCCTATCCTTACACGGATCGGAAGCTAATTACAACCTAATTCTCCGATTCCACCTTCACTCTGAAAATTTCCCGGTTGTATTTCTCTTCCGTTCGCTGGATCAGCCATTGATTCGTTTGAATTTCTCTGTTACTCCTCAATCATCTAGCAAAATGAGCTCCATCTCTCTCTCCAATTCACATCCTCTTGCGCGCCCTTATCCTCATCATCTTCCTCACTCTCACCGTCAACAATGGTGCTCCCGCCCTCTGCTTTCGACCAATTCTCTTTCTAAGCTACACCGGTTTGGGATCTCCGACCGATTCCCCGCTCGACCTCCCTTGCCTTTGGTTCTTGCTTCTTCTGGAGCTGGCGTCGTTGATTCCTTTCCGCTCAGAGGAACATATACGGTTGGTGATTTTATGACGAGAAAGGAGAATCTATATGTTGTTAAACCTACAACAACAGTTGATGAAGCATTAGAGGTCTTGGTGGAAAAGAGAATAACTGGCTTTCCTGTTGTCGATGATGATTGGAATCTGGTTGGAGTTGTCTCAGATTATGACTTATTAGCACTTGATTCCATTTCAGGTGGTACTCAGAGTGATACCAATCTGTTTCCTGATGTGGATAGTTCGTGGAAAGTATGTAAGCAGTGCCATTTATCTTCTGGTTATTTGCCCTCTTTTTTTTTTTTCACAAACATGAGGATTTTTAACAAAAACACCCTCAGAAAACGTGATCAATCCACTGTTTGGATTGGTTTTCAGCTGTGTGAACCCAAATCAGCAGAAAAATATTGTTCTCAGACCCTTTTGGAAAGTACTCCAAAATATTGTTTGATTGATCTTTGGAGTACTCATTTTCAAAAAATGAAATATTTATTGATACATTGA

Coding sequence (CDS)

ACGGGGATTTTTCTCTCCATTAAAACGCCTTTTTTtCTCTTGGAAAAGTGTTCTTGTTTCCTATCCTTACACGGATCGGAAGCTAATTACAACCTAATTCTCCGATTCCACCTTCACTCTGAAAATTTCCCGGTTGTATTTCTCTTCCGTTCGCTGGATCAGCCATTGATTCGTTTGAATTTCTCTGTTACTCCTCAATCATCTAGCAAAATGAGCTCCATCTCTCTCTCCAATTCACATCCTCTTGCGCGCCCTTATCCTCATCATCTTCCTCACTCTCACCGTCAACAATGGTGCTCCCGCCCTCTGCTTTCGACCAATTCTCTTTCTAAGCTACACCGGTTTGGGATCTCCGACCGATTCCCCGCTCGACCTCCCTTGCCTTTGGTTCTTGCTTCTTCTGGAGCTGGCGTCGTTGATTCCTTTCCGCTCAGAGGAACATATACGGTTGGTGATTTTATGACGAGAAAGGAGAATCTATATGTTGTTAAACCTACAACAACAGTTGATGAAGCATTAGAGGTCTTGGTGGAAAAGAGAATAACTGGCTTTCCTGTTGTCGATGATGATTGGAATCTGGTTGGAGTTGTCTCAGATTATGACTTATTAGCACTTGATTCCATTTCAGGTGGTACTCAGAGTGATACCAATCTGTTTCCTGATGTGGATAGTTCGTGGAAAGTATGTAAGCAGTGCCATTTATCTTCTGGTTATTTGCCCTCTTTTTTTTTTTtCACAAACATGAGGATTTTTAACAAAAACACCCTCAGAAAACGTGATCAATCCACTGTTTGGATTGGTTTTCAGCTGTGTGAACCCAAATCAGCAGAAAAATATTGTTCTCAGACCCTTTTGGAAAGTACTCCAAAATATTGTTTGATTGATCTTTGGAGTACTCATTTTCAAAAAaTGAAATATTTATTGATACATTGA

Protein sequence

TGIFLSIKTPFFLLEKCSCFLSLHGSEANYNLILRFHLHSENFPVVFLFRSLDQPLIRLNFSVTPQSSSKMSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLVLASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWKVCKQCHLSSGYLPSFFFFTNMRIFNKNTLRKRDQSTVWIGFQLCEPKSAEKYCSQTLLESTPKYCLIDLWSTHFQKMKYLLIH*
Homology
[Close]
BLAST of Cucsa.244520 vs. Swiss-Prot
Match: CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 2.8e-35
Identity = 71/122 (58.20%), Postives = 97/122 (79.51%), Query Frame = 1 

Query: 108 SLSKLHRFGISDRFPARPPLPLVLASSGAGVV--DSFPLRGTYTVGDFMTRKENLYVVKP 167
           S+   H+F  S  FP++  +P   +++G+ ++   S P  G YTVG+FMT+KE+L+VVKP
Sbjct: 33  SVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKP 92

Query: 168 TTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSS 227
           TTTVDEALE+LVE RITGFPV+D+DW LVG+VSDYDLLALDSISG  +++ ++FP+VDS+
Sbjct: 93  TTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDST 152


HSP 2 Score: 37.4 bits (85), Expect = 3.5e-01
Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV+  T +++A ++L+E +    PVVD D  LVG+++
Sbjct: 171 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 217

[Close]
BLAST of Cucsa.244520 vs. Swiss-Prot
Match: CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.1e-34
Identity = 87/162 (53.70%), Postives = 110/162 (67.90%), Query Frame = 1 

Query: 71  MSSISLSNSHPLAR-PYPHHLPHSHRQQWCSRPLLSTNSLSKL---HRFGISDRFPARPP 130
           M SISLSNS P+ R P    L H       S   +S++S S L   +R   S   P+   
Sbjct: 1   MGSISLSNSMPITRLPLLTSLYHQ------SFLPISSSSFSLLPLSNRRRSSTFSPSITV 60

Query: 131 LPLVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFP 190
                A +     +S P + G YTVGDFMT ++NL+VVKP+T+VD+ALE+LVEK++TG P
Sbjct: 61  SAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLP 120

Query: 191 VVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           V+DD+W LVGVVSDYDLLALDSISG +Q+DTNLFPDVDS+WK
Sbjct: 121 VIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK 156


HSP 2 Score: 36.2 bits (82), Expect = 7.8e-01
Identity = 18/49 (36.73%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV+ +T +++A  +L+E +    PVVD D  L+G+++
Sbjct: 173 VGDLMTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILT 219

[Close]
BLAST of Cucsa.244520 vs. TrEMBL
Match: A0A0A0L716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202220 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.7e-85
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 71  MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV 130
           MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV
Sbjct: 1   MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV 60

Query: 131 LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 190
           LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD
Sbjct: 61  LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 120

Query: 191 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Sbjct: 121 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 157

[Close]
BLAST of Cucsa.244520 vs. TrEMBL
Match: A0A0A0L716_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202220 PE=4 SV=1)

HSP 1 Score: 35.8 bits (81), Expect = 1.1e+02
Identity = 18/49 (36.73%), Postives = 29/49 (59.18%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT       V+ T+ +++A  +L+E +    PVVD D  LVG+++
Sbjct: 174 VGDLMTSSP--LAVRETSNLEDAARLLLETKYRRLPVVDADGKLVGIIT 220


HSP 2 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 92/127 (72.44%), Postives = 100/127 (78.74%), Query Frame = 1 

Query: 102 PLLSTNSLSKLHRFGISDRFPARPPLPLVLASSGAGVVDSFPLRG-TYTVGDFMTRKENL 161
           P   +  L +  RF  SDRF +R   P + ASSGA V +S P R  TYTVGDFMTRKENL
Sbjct: 29  PAHQSRKLLQRRRFDASDRF-SRSLRPPIAASSGAHVANSVPSRNKTYTVGDFMTRKENL 88

Query: 162 YVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFP 221
            VVKPTTTVDEALE LVEKRITGFPV+DDDW LVGVVSDYDLLALDSISGG Q DT+LFP
Sbjct: 89  LVVKPTTTVDEALETLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGGQCDTSLFP 148

Query: 222 DVDSSWK 228
           +VDSSWK
Sbjct: 149 NVDSSWK 154

[Close]
BLAST of Cucsa.244520 vs. TrEMBL
Match: W9S667_9ROSA (CBS domain-containing protein CBSX1 OS=Morus notabilis GN=L484_027493 PE=4 SV=1)

HSP 1 Score: 36.2 bits (82), Expect = 8.7e+01
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV  TT +++A  +L+E +    PVVD +  LVG+++
Sbjct: 171 VGDLMTSAP--LVVHETTNLEDAARLLLETKYRRLPVVDGEGKLVGIIT 217


HSP 2 Score: 166.4 bits (420), Expect = 5.6e-38
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = 1 

Query: 129 LVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVV 188
           + +A++GA V +S P R G+YTVGDFMTRKE+L+VVK TTTVDEALE+LVEKRITGFPV+
Sbjct: 59  VTVAAAGASVTNSVPPRNGSYTVGDFMTRKEDLHVVKATTTVDEALEMLVEKRITGFPVI 118

Query: 189 DDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWKVCKQ 232
           DD+WNLVGVVSDYDLLALDSISGG Q D N+FPDVDSSWKVC++
Sbjct: 119 DDEWNLVGVVSDYDLLALDSISGGAQGDANIFPDVDSSWKVCRR 162

[Close]
BLAST of Cucsa.244520 vs. TrEMBL
Match: A0A059AMD8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01128 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.3e-38
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 1 

Query: 129 LVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVV 188
           + +A++GA V +S P R G+YTVGDFMTRKE+L+VVK TTTVDEALE+LVEKRITGFPV+
Sbjct: 59  VTVAAAGASVTNSVPPRNGSYTVGDFMTRKEDLHVVKATTTVDEALEMLVEKRITGFPVI 118

Query: 189 DDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWKVCKQ 232
           DD+WNLVGVVSDYDLLALDSISGG Q D N+FPDVDSSWKVC Q
Sbjct: 119 DDEWNLVGVVSDYDLLALDSISGGAQGDANIFPDVDSSWKVCFQ 162

[Close]
BLAST of Cucsa.244520 vs. TrEMBL
Match: M5VMP1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010834mg PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.0e-37
Identity = 90/129 (69.77%), Postives = 101/129 (78.29%), Query Frame = 1 

Query: 106 TNSLSKLHRF---GISDRFPARPPLPLVLASSGAGVV-DSFPLRGTYTVGDFMTRKENLY 165
           ++SL  L RF    +S R  +    PLVLASS AGV  +S P  GT+TVGDFMT KE L+
Sbjct: 26  SSSLLPLRRFPLLALSKRRRSLQFRPLVLASSAAGVASNSLPRNGTFTVGDFMTTKEYLH 85

Query: 166 VVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISG---GTQSDTNL 225
           VVKP+TTVD+AL+ LVEKRITGFPV+DDDW LVGVVSDYDLLALDSISG   G QSDTNL
Sbjct: 86  VVKPSTTVDQALDALVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGNIKGGQSDTNL 145

Query: 226 FPDVDSSWK 228
           FPDVDSSWK
Sbjct: 146 FPDVDSSWK 154

[Close]
BLAST of Cucsa.244520 vs. TAIR10
Match: AT4G36910.1 (AT4G36910.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-36
Identity = 71/122 (58.20%), Postives = 97/122 (79.51%), Query Frame = 1 

Query: 108 SLSKLHRFGISDRFPARPPLPLVLASSGAGVV--DSFPLRGTYTVGDFMTRKENLYVVKP 167
           S+   H+F  S  FP++  +P   +++G+ ++   S P  G YTVG+FMT+KE+L+VVKP
Sbjct: 33  SVQPCHKFTFSRSFPSKSRIPSASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKP 92

Query: 168 TTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSS 227
           TTTVDEALE+LVE RITGFPV+D+DW LVG+VSDYDLLALDSISG  +++ ++FP+VDS+
Sbjct: 93  TTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDST 152


HSP 2 Score: 37.4 bits (85), Expect = 2.0e-02
Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV+  T +++A ++L+E +    PVVD D  LVG+++
Sbjct: 171 VGDLMTPAP--LVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIIT 217

[Close]
BLAST of Cucsa.244520 vs. TAIR10
Match: AT4G34120.1 (AT4G34120.1 Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-35
Identity = 87/162 (53.70%), Postives = 110/162 (67.90%), Query Frame = 1 

Query: 71  MSSISLSNSHPLAR-PYPHHLPHSHRQQWCSRPLLSTNSLSKL---HRFGISDRFPARPP 130
           M SISLSNS P+ R P    L H       S   +S++S S L   +R   S   P+   
Sbjct: 1   MGSISLSNSMPITRLPLLTSLYHQ------SFLPISSSSFSLLPLSNRRRSSTFSPSITV 60

Query: 131 LPLVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFP 190
                A +     +S P + G YTVGDFMT ++NL+VVKP+T+VD+ALE+LVEK++TG P
Sbjct: 61  SAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLP 120

Query: 191 VVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           V+DD+W LVGVVSDYDLLALDSISG +Q+DTNLFPDVDS+WK
Sbjct: 121 VIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK 156


HSP 2 Score: 36.2 bits (82), Expect = 4.4e-02
Identity = 18/49 (36.73%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV+ +T +++A  +L+E +    PVVD D  L+G+++
Sbjct: 173 VGDLMTPSP--LVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILT 219

[Close]
BLAST of Cucsa.244520 vs. NCBI nr
Match: gi|449445894|ref|XP_004140707.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 3.9e-85
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 

Query: 71  MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV 130
           MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV
Sbjct: 1   MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV 60

Query: 131 LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 190
           LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD
Sbjct: 61  LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 120

Query: 191 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Sbjct: 121 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 157

[Close]
BLAST of Cucsa.244520 vs. NCBI nr
Match: gi|449445894|ref|XP_004140707.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 35.8 bits (81), Expect = 1.6e+02
Identity = 18/49 (36.73%), Postives = 29/49 (59.18%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT       V+ T+ +++A  +L+E +    PVVD D  LVG+++
Sbjct: 174 VGDLMTSSP--LAVRETSNLEDAARLLLETKYRRLPVVDADGKLVGIIT 220


HSP 2 Score: 317.8 bits (813), Expect = 2.1e-83
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 1 

Query: 71  MSSISLSNSHPLARPYPHHLPHSHRQQWCSRPLLSTNSLSKLHRFGISDRFPARPPLPLV 130
           M+SISLSNSH LARPYPHHLPHSHRQQWCSRPLLS+NSLSKLHRFGISDRFPARPPLPLV
Sbjct: 1   MTSISLSNSHALARPYPHHLPHSHRQQWCSRPLLSSNSLSKLHRFGISDRFPARPPLPLV 60

Query: 131 LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 190
           LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD
Sbjct: 61  LASSGAGVVDSFPLRGTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDD 120

Query: 191 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK
Sbjct: 121 WNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 157

[Close]
BLAST of Cucsa.244520 vs. NCBI nr
Match: gi|659112269|ref|XP_008456144.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 35.8 bits (81), Expect = 1.6e+02
Identity = 18/49 (36.73%), Postives = 29/49 (59.18%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT       V+ T+ +++A  +L+E +    PVVD D  LVG+++
Sbjct: 174 VGDLMTSSP--LAVRETSNLEDAARLLLETKYRRLPVVDADGKLVGIIT 220


HSP 2 Score: 179.1 bits (453), Expect = 1.2e-41
Identity = 103/164 (62.80%), Postives = 117/164 (71.34%), Query Frame = 1 

Query: 67  SSSKMSSISLSNSHPLARPYPHHLP--HSHRQQWCSRPLLSTNSLSKLHRFGISDRFPAR 126
           S S  S I L  +H  + P     P  HSH      RPL    SLS  HR   S  F   
Sbjct: 18  SGSANSPILLLRNHHRSLPSSFLFPCLHSH-----PRPLPIPPSLSTRHRLTSSRGFSGN 77

Query: 127 PPLPLVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITG 186
            P   V+ASSG+ VV+S P R GTYTVGDFMT+K+NL+VVKP+TTVDEAL+ LVEKRITG
Sbjct: 78  RP-SAVVASSGSHVVNSLPPRNGTYTVGDFMTKKDNLHVVKPSTTVDEALQALVEKRITG 137

Query: 187 FPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWK 228
           FPV+DDDW LVGVVSDYDLLALDSISGG+Q+DTNLFP+VDSSWK
Sbjct: 138 FPVIDDDWKLVGVVSDYDLLALDSISGGSQNDTNLFPNVDSSWK 175

[Close]
BLAST of Cucsa.244520 vs. NCBI nr
Match: gi|1009150146|ref|XP_015892863.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 38.9 bits (89), Expect = 1.9e+01
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV+ TT +++A  +L+E +    PVVD D  LVG+++
Sbjct: 192 VGDLMTTAP--LVVRETTNLEDAARLLLETKYRRLPVVDGDGKLVGIIT 238


HSP 2 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 92/127 (72.44%), Postives = 100/127 (78.74%), Query Frame = 1 

Query: 102 PLLSTNSLSKLHRFGISDRFPARPPLPLVLASSGAGVVDSFPLRG-TYTVGDFMTRKENL 161
           P   +  L +  RF  SDRF +R   P + ASSGA V +S P R  TYTVGDFMTRKENL
Sbjct: 29  PAHQSRKLLQRRRFDASDRF-SRSLRPPIAASSGAHVANSVPSRNKTYTVGDFMTRKENL 88

Query: 162 YVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVSDYDLLALDSISGGTQSDTNLFP 221
            VVKPTTTVDEALE LVEKRITGFPV+DDDW LVGVVSDYDLLALDSISGG Q DT+LFP
Sbjct: 89  LVVKPTTTVDEALETLVEKRITGFPVIDDDWKLVGVVSDYDLLALDSISGGGQCDTSLFP 148

Query: 222 DVDSSWK 228
           +VDSSWK
Sbjct: 149 NVDSSWK 154

[Close]
BLAST of Cucsa.244520 vs. NCBI nr
Match: gi|703143017|ref|XP_010107905.1| (CBS domain-containing protein CBSX1 [Morus notabilis])

HSP 1 Score: 36.2 bits (82), Expect = 1.2e+02
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 1 

Query: 150 VGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVVDDDWNLVGVVS 199
           VGD MT      VV  TT +++A  +L+E +    PVVD +  LVG+++
Sbjct: 171 VGDLMTSAP--LVVHETTNLEDAARLLLETKYRRLPVVDGEGKLVGIIT 217


HSP 2 Score: 166.4 bits (420), Expect = 8.0e-38
Identity = 80/104 (76.92%), Postives = 94/104 (90.38%), Query Frame = 1 

Query: 129 LVLASSGAGVVDSFPLR-GTYTVGDFMTRKENLYVVKPTTTVDEALEVLVEKRITGFPVV 188
           + +A++GA V +S P R G+YTVGDFMTRKE+L+VVK TTTVDEALE+LVEKRITGFPV+
Sbjct: 59  VTVAAAGASVTNSVPPRNGSYTVGDFMTRKEDLHVVKATTTVDEALEMLVEKRITGFPVI 118

Query: 189 DDDWNLVGVVSDYDLLALDSISGGTQSDTNLFPDVDSSWKVCKQ 232
           DD+WNLVGVVSDYDLLALDSISGG Q D N+FPDVDSSWKVC++
Sbjct: 119 DDEWNLVGVVSDYDLLALDSISGGAQGDANIFPDVDSSWKVCRR 162

The following BLAST results are available for this feature:
BLAST of Cucsa.244520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CBSX1_ARATH2.8e-3558.20CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CB... [more]
CBSX2_ARATH9.1e-3453.70CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CB... [more]
BLAST of Cucsa.244520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L716_CUCSA2.7e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202220 PE=4 SV=1[more]
A0A0A0L716_CUCSA1.1e+0236.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G202220 PE=4 SV=1[more]
W9S667_9ROSA8.7e+0138.78CBS domain-containing protein CBSX1 OS=Morus notabilis GN=L484_027493 PE=4 SV=1[more]
A0A059AMD8_EUCGR7.3e-3877.88Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01128 PE=4 SV=1[more]
M5VMP1_PRUPE8.0e-3769.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010834mg PE=4 SV=1[more]
BLAST of Cucsa.244520 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36910.11.6e-3658.20 Cystathionine beta-synthase (CBS) family protein[more]
AT4G34120.15.1e-3553.70 Cystathionine beta-synthase (CBS) family protein[more]
BLAST of Cucsa.244520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445894|ref|XP_004140707.1|3.9e-85100.00PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sati... [more]
gi|449445894|ref|XP_004140707.1|1.6e+0236.73PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sati... [more]
gi|659112269|ref|XP_008456144.1|1.6e+0236.73PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo... [more]
gi|1009150146|ref|XP_015892863.1|1.9e+0140.82PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like isoform X1 [Z... [more]
gi|703143017|ref|XP_010107905.1|1.2e+0238.78CBS domain-containing protein CBSX1 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0008150 biological_process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.244520.1Cucsa.244520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainPFAMPF00571CBScoord: 150..204
score: 1.8
IPR000644CBS domainSMARTSM00116cbs_1coord: 159..207
score: 2.
IPR000644CBS domainPROFILEPS51371CBScoord: 154..214
score: 13
NoneNo IPR availableGENE3DG3DSA:3.10.580.10coord: 148..204
score: 1.4
NoneNo IPR availablePANTHERPTHR11911INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATEDcoord: 143..227
score: 2.3
NoneNo IPR availablePANTHERPTHR11911:SF109SUBFAMILY NOT NAMEDcoord: 143..227
score: 2.3
NoneNo IPR availableunknownSSF54631CBS-domain paircoord: 146..211
score: 4.59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.244520Cla016025Watermelon (97103) v1cgywmB463
Cucsa.244520Cla013086Watermelon (97103) v1cgywmB462
Cucsa.244520Csa3G202220Cucumber (Chinese Long) v2cgycuB350
Cucsa.244520Csa7G073520Cucumber (Chinese Long) v2cgycuB351
Cucsa.244520MELO3C018463Melon (DHL92) v3.5.1cgymeB416
Cucsa.244520MELO3C019527Melon (DHL92) v3.5.1cgymeB417
Cucsa.244520ClCG02G006090Watermelon (Charleston Gray)cgywcgB432
Cucsa.244520CSPI03G18300Wild cucumber (PI 183967)cgycpiB366
Cucsa.244520CSPI07G07500Wild cucumber (PI 183967)cgycpiB367
Cucsa.244520CmaCh11G017380Cucurbita maxima (Rimu)cgycmaB0684
Cucsa.244520CmaCh16G003500Cucurbita maxima (Rimu)cgycmaB0685
Cucsa.244520CmaCh04G004800Cucurbita maxima (Rimu)cgycmaB0687
Cucsa.244520CmoCh11G013770Cucurbita moschata (Rifu)cgycmoB0684
Cucsa.244520CmoCh16G003740Cucurbita moschata (Rifu)cgycmoB0685
Cucsa.244520CmoCh04G005150Cucurbita moschata (Rifu)cgycmoB0687
Cucsa.244520Lsi03G005060Bottle gourd (USVL1VR-Ls)cgylsiB403
Cucsa.244520Lsi05G002270Bottle gourd (USVL1VR-Ls)cgylsiB404
Cucsa.244520Cp4.1LG14g04200Cucurbita pepo (Zucchini)cgycpeB0652
Cucsa.244520Cp4.1LG01g02330Cucurbita pepo (Zucchini)cgycpeB0654
Cucsa.244520MELO3C019527.2Melon (DHL92) v3.6.1cgymedB412
Cucsa.244520MELO3C018463.2Melon (DHL92) v3.6.1cgymedB411
Cucsa.244520CsaV3_3G018360Cucumber (Chinese Long) v3cgycucB369
Cucsa.244520CsaV3_7G008450Cucumber (Chinese Long) v3cgycucB370
Cucsa.244520Cla97C02G033040Watermelon (97103) v2cgywmbB434
Cucsa.244520Cla97C05G092560Watermelon (97103) v2cgywmbB435
Cucsa.244520Bhi05G000939Wax gourdcgywgoB494
Cucsa.244520Bhi01G001269Wax gourdcgywgoB493
Cucsa.244520Carg19658Silver-seed gourdcarcgyB0345
Cucsa.244520Carg08149Silver-seed gourdcarcgyB0436
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.244520Cucsa.219730Cucumber (Gy14) v1cgycgyB117
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.244520Cucurbita pepo (Zucchini)cgycpeB0653
Cucsa.244520Silver-seed gourdcarcgyB0253
Cucsa.244520Cucurbita maxima (Rimu)cgycmaB0686
Cucsa.244520Cucurbita moschata (Rifu)cgycmoB0686
Cucsa.244520Watermelon (Charleston Gray)cgywcgB433